Detection and genetic diversity of porcine rotavirus A,B and C in eastern Australian piggeries

Rotaviruses (RV) have a high prevalence in piggeries worldwide and are one of the major pathogens causing severe diarrhoea in young pigs. RV species A, B, and C have been linked to piglet diarrhoea in Australian pig herds, but their genetic diversity has not been studied in detail. Based on sequencing of the structural viral protein 7 (VP7) RVA G genotypes G3, G4 and G5, and RVC types G1, G3, G5, and G6 have been identified in Australian piggeries in previous studies. Although occurrence of RVB was reported in Australia in 1988, no further genetic analysis has been conducted. To improve health management decisions in Australian pig herds, more information on RV prevalence and genetic diversity is needed. Here, 243 enteric samples collected from 20 pig farms within Eastern Australia were analysed for the presence of RV in different age groups using a novel PCR-based multiplex assay (Pork MultiPath™ enteric panel). RVA, RVB, and RVC were detected in 10, 14, and 14 farms, respectively. Further sequencing of VP7 in selected RV-positive samples revealed G genotypes G2, G5, G9 (RVA), G6, G8, G14, G16, G20 (RVB), and G1, G3, G5, G6 (RVC) present. RVA was only detected in young (<10 weeks old) pigs whereas RVB and RVC were also detected in older animals (>11 weeks old). Interestingly, RVB and RVC G-type occurrence differed between age groups. In conclusion, this study provides new insights on the prevalence and diversity of different RV species in pig herds of Eastern Australia whilst demonstrating the ability of the Pork MultiPath™ technology to accurately differentiate between these RV species.     

Detection of Ureaplasma diversum in the upper airways of Australian feedlot cattle

Bovine respiratory disease (BRD) exerts a major impact on the beef cattle industry nationally and worldwide, with a range of aetiological factors impacting its pathogenesis. Previous research has focussed on an increasing number of bacteria and viruses that have been shown to play a role in eliciting disease. Recently, additional agents have been emerging as potential contributors to BRD, including the opportunistic pathogen Ureaplasma diversum. To determine if U. diversum was present in Australian feedlot cattle and if that presence was linked to BRD, nasal swabs were collected from a cohort of 34 hospital pen animals and compared to 216 apparently healthy animals sampled contemporaneously at feedlot induction and again after 14 days on feed at an Australian feedlot. All samples were subjected to a de novo polymerase chain reaction (PCR) assay targeting U. diversum in combination with other BRD agents. U. diversum was detected at a low prevalence in cattle at induction (Day 0: 6.9%, Day 14: 9.7%), but in a significantly greater proportion of cattle sampled from the hospital pen (58.8%). When considering the presence of other BRD-associated agents, co-detection of U. diversum and Mycoplasma bovis was most common in hospital pen animals receiving treatment for BRD. These findings suggest that U. diversum may be an opportunistic pathogen involved in the aetiology of BRD in Australian feedlot cattle, in combination with other agents, with further studies are warranted to identify if a causal relationship exists.     

Alpha-amylase/subtilisin Inhibitor Levels in Australian Barleys

An enzyme-linked immunosorbent assay (ELISA) was used to determine the bifunctional alpha-amylase/subtilisin inhibitor (BASI) content of barley grain from 11 cultivars grown in six diverse locations in Australia. The inhibitor ranged from 119 to 254 μg/g in 57 barley samples. Genotype had a significant (P<0·05) effect on BASI content but there was no effect due to environment. Total protein varied independently of BASI and was influenced by environment and genotype. BASI content was higher (P<0·05) in malting barley than in feed barley and was correlated positively (r=0·29;P<0·05) with alpha-amylase activity in corresponding malts. The ELISA used monoclonal and polyclonal antibodies raised against purified BASI. In immunoblot analysis the monoclonal antibody showed high specificity for the inhibitor in barley and also detected the inhibitor in wheat. Low levels of inhibitor (mean 3·2 μg/g) were found in 12 Australian wheat cultivars using the ELISA developed for barley. The assay had a linear working range of 5–50 ng/mL with a detection limit of 2 ng/mL. Reproducibility between assays was good (CV=4·9%) but mean recoveries were high, ranging from 116–129% when purified inhibitor was added to barley extracts. The ELISA may have useful applications in brewing research and barley breeding programmes.     

Development of a forest certification standard compatible with PEFC and FSC's management requirements. A case study from Greece

Greece currently has no national forest certification standard.This paper explains how a draft forest management standard forGreece was developed to be compatible with both the Forest StewardshipCouncil and the Programme for the Endorsement of Forest Certificationschemes requirements. The draft standard was tested in two contrastingforest areas to investigate its ease of operation, to indicatenecessary refinements to the standard and to reveal major areasof weakness in current forest management practices. Field testingshowed that the standard was operationally efficient and thatrelatively few changes to the standard were necessary. Majorweaknesses in current management practices were identified asbreaches of health and safety, poor training of forest workersand inadequate consultation with stakeholders.     

Water Use of Tree Lines: Importance of Leaf Area and Micrometeorology in Sub-Humid Kenya

In this research the relative importance of leaf area and microclimatic factors in determining water use of tree lines was examined in sub-humid Western Kenya. Measurements of tree water-use by a heat-balance technique, leaf area, bulk air saturation deficit, daily radiation, and soil water content were done in an experiment with tree lines within crop fields. The tree species were Eucalyptus grandis W. Hill ex Maiden, Grevillea robusta A. Cunn. and Cedrella serrata Royle, grown to produce poles on a phosphorus-fixing Oxisol/Ferralsol with (+P) or without (−P) phosphorus application. Doubling the leaf area of Cedrella and Grevillea doubled water use in a leaf area (LA) range of 1–11 m² per tree. The response of Eucalyptus water use (W) to increases in leaf area was slightly less marked, with W = LAⁿ, n<1. Transpiration rate per unit leaf area (Tr) was the other important determinant of water use, being affected by both tree species and phosphorus fertilization. A doubling of the saturation deficit (SD) halved the water use of all trees except for Cedrella +P, in which water use increased. A direct effect of soil water content on water use was only found in Grevillea -P, with a small increase (60%) as available water increased from 1.4 to 8.9% above wilting point (32%). This low direct response to soil water content is probably due to the extensive tree-root systems and the deep clayey soils supplying sufficient water to meet the evaporative demand. Indirect responses to soil water content via decreases in leaf area occurred in the dry season. The results showed that water use of tree lines was more determined by leaf area and transpiration rate per unit leaf area than by micro meteorological factors. The linear response of tree water use to leaf area, over a wide range leaf areas, is a specific characteristic of tree line configurations and distinguished them from forest stands. In tree lines light interception and canopy conductance increase with leaf area much more than a similar leaf area increase would have caused in a closed forest canopy.     

Farmer-led approaches to increasing tree diversity in fields and farmed landscapes in Ethiopia

Agroforestry Systems - Increasing tree cover and managing trees better on farms in Ethiopia supports livelihoods and the environment but most tree-planting schemes promote only a few species. This...     

Amazon floodplain hydrology and implications for aquatic conservation

1. The amplitude, duration, frequency, and predictability of runoff and inundation of aquatic habitats are key hydrological characteristics linked to aquatic ecosystem functioning and biodiversity, but they are seldom integrated into analyses of Amazon floodplain ecology. Remote sensing approaches, measurements and modelling of floodplain hydrology provide a basis for this integration.
2. Effective legislation to protect floodplains and other wetlands depends on operational definitions that require application of hydrological data.
3. Extent and changes of flooded areas are linked to fish diversity and to presence and growth of flooded forests and floating plants.
4. Dam construction reduces river system connectivity and modifies the flood pulse, with major negative implications for floodplain ecosystems adapted to and dependent on a natural flood regime.
5. Trends and variability in climate plus deforestation are altering the Amazon's hydrological cycle, causing changes in discharge and flooded area with concomitant ecological impacts.