A new primer for 16S rDNA analysis of microbial communities associated with <Emphasis Type="Italic">Porphyra yezoensis</Emphasis>

To construct high-quality 16S rDNA clone libraries for microbial communities associated with Porphyra yezoensis and to minimize the detection of rDNA from leafy gametophytes of P. yezoensis, we designed a new 16S rDNA universal primer (75F). Of the clones prepared using 75F, which was designed to distinguish between bacteria and P. yezoensis, 95% were classified into four groups, namely, β-proteobacteria, γ-proteobacteria, Lentisphaerae, and Flavobacteria. PCR-based analysis of the 16S rDNA primer constructed in this study can be used to implement 16S rDNA-based methodologies for the investigation of microbial community composition and diversity related to the Porphyra group.     

Electrokinetic-enhanced remediation of actual arsenic-contaminated soils with approaching cathode and Fe0 permeable reactive barrier

Purpose

The aim of this study was to investigate the remediation efficiency of actual arsenic-contaminated soils by electrokinetic (EK)-enhanced remediation with approaching cathode and Fe⁰ permeable reactive barrier (PRB).

Materials and methods

Experiments were conducted in a lab-made apparatus consisting of the anode reservoir, the soil specimen chamber, and the cathode reservoir.

Results and discussion

In this study, the enhanced combination methods (approaching cathode and Fe⁰-PRB) were assisted for EK remediation of actual arsenic-contaminated soils under a voltage gradient of 1 V/cm and a treatment period of 96 h. Experimental results showed that arsenic accumulated in the anode sections (I, II) of the soil by employing EK alone with an arsenic removal rate of less than 5%. In contrast, EK-enhanced remediation with either approaching cathode (EK/AC) or Fe⁰-PRB (EK/PRB) reduced the arsenic concentrations in both central and anode sections of the soil and afforded the removal rates of 20% in both cases. However, EK-enhanced remediation with the combination of approaching cathode and Fe⁰-PRB (EK/PRB/AC) reached the removal efficiency of 45% without arsenic accumulation in any soil sections. This phenomenon is mainly caused by the approaching cathode that creates an alkaline environment to promote the migration of arsenic, as well as PRB filled with Fe⁰ that achieves the adsorption and immobilization of arsenic.

Conclusions

The highest remediation efficiency was achieved in the EK/PRB/AC test, which was attributed to the fact that the combination of this two methods solved the problem of arsenic accumulation in treated soil and ensured a more thorough arsenic removal. Furthermore, enhanced remediation efficiency does not elevate the costs.

     

Effects of acid extracts of tomato (Lycopersicon esculentum Mill.) and carrot (Daucus carota L.)wastes from the food industry on the growth of some crops and weeds

The effects of acid extracts of tomato ( Lycopersicon esculentum Mill.) and carrot ( Daucus carota L.) juice wastes from the food industry on the growth of five species of crops and four weeds were examined. The acid extract of the tomato juice waste promoted the shoot and root growth of tomato, Chinese cabbage, corn, and radish, but not the growth of oat seedlings. The extract did not promote the shoot growth of weeds tested, and it inhibited the root growth of the weeds that included barnyardgrass ( Echinochloa oryzicola Ohwi), southern crabgrass ( Digitaria ciliaris Koel.) and Japanese barnyard millet ( Echinochloa utilis Ohwi). The carrot juice waste was also examined as another waste from the food industry. The effect of the acid extract of carrot juice waste showed significant promoting effects on the root growth of Chinese cabbage; however, the effects on other plants were lower than that of tomato juice waste. It also did not inhibit the growth of weeds. These results suggested that the acid extract from tomato juice waste is useful as plant-growth substances because they have a promoting effect on the shoot and root growth of crops, and an inhibitory effect on the root growth of some weeds.     

Lipopolysaccharide induces expression of collagen VI in the rat lung

The involvement of the lung during the septic systemic inflammatory response elicited by administration of lipopolysaccharide (LPS) was investigated. Eight-week-old male Sprague–Dawley rats were injected i.p. with 15 mg/kg LPS. After 24 h, the lungs were excised to evaluate the cellular responses to LPS. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF) analysis revealed that type VI collagen (ColVI) was extremely upregulated during sepsis in the rat lung within the first 24 h of LPS administration. Upregulation of ColVI protein and its mRNA was demonstrated by Western blot analysis, real time PCR, and immunohistochemistry. To the best of our knowledge, this is the first report demonstrating the activation of ColVI in the rat lung at the early stage of systemic inflammation. Activation of ColVI might be involved in sepsis-mediated lung fibrosis at an early stage.     

Establishment of a Conditional Transgenic System Using the 2A Peptide in the Female Mouse Germline

Transgenic mice are essential research tools in developmental biology studies. The 2A peptide allows multiple genes to be expressed simultaneously at comparable levels in somatic cells, but there are no reports of it being used successfully in germ cells. We constructed a Cre/loxP-based conditional vector containing the 2A peptide to significantly enhance the expression of a reporter and target gene from a constitutive promoter in oocytes. Mice with a transgene insertion containing the chicken β-actin promoter, floxed EGFP-polyA cassette, mCherry reporter, 2A peptide and target gene DNA methyltransferase 3A2 (Dnmt3a2) were crossed with TNAP- or Vasa-Cre mice to produce offspring, in which mCherry and DNMT3A2 proteins were highly expressed in oocytes upon Cre-mediated removal of EGFP-polyA. This novel transgenic mouse line based on the 2A expression system can serve as a useful tool for examining gene function during oogenesis.     

Very low vitamin C activity of orally administered L-dehydroascorbic acid.

The biological activity of L-dehydroascorbic acid (DHA), which is easily formed from L-ascorbic acid (ASC) during storage and cooking processes, has been considered to be equivalent to that of ASC on the basis of studies made several decades ago, when a specific method to determine ASC was not available. The nutritional activity of orally ingested DHA has now been evaluated by comparing ASC concentrations in 12 tissues of rats administered four different doses of ASC. Determinations were made by using the specific and sensitive method, which had been developed by us. Here it is shown that the efficiency of DHA was almost 10% of that of ASC on a molar basis, based on animal experiments using the inherently scorbutic ODS rat, which is a convenient human model animal to investigate the metabolism of vitamin C. On the basis of these findings, it is proposed that it is necessary to reevaluate the nutritional requirement of vitamin C based on both ASC and DHA contents of foods.     

Control mechanism of the circadian clock for timing of cell division in vivo

Cell division in many mammalian tissues is associated with specific times of day, but just how the circadian clock controls this timing has not been clear. Here, we show in the regenerating liver (of mice) that the circadian clock controls the expression of cell cycle-related genes that in turn modulate the expression of active Cyclin B1-Cdc2 kinase, a key regulator of mitosis. Among these genes, expression of wee1 was directly regulated by the molecular components of the circadian clockwork. In contrast, the circadian clockwork oscillated independently of the cell cycle in single cells. Thus, the intracellular circadian clockwork can control the cell-division cycle directly and unidirectionally in proliferating cells.     

Virtopsy in a red kangaroo with oral osteomyelitis

This report describes the use of computed tomography (CT) in a nondomestic species. Postmortem CT was performed on a red kangaroo (Macropus rufus) and a diagnosis of oral osteomyelitis was made. CT examination revealed bony remodeling of the right mandible, an intraosseous lesion of the right temporal bone, muscle necrosis around the right mandible, and the absence of the right, first, upper molar tooth. Cardiac and intrahepatic gas and a distended intestine due to postmortem gas accumulation were also seen. All the lesions identified with CT were also identified by conventional necropsy, except the cardiac and intrahepatic gases. Virtopsy may be a useful procedure for the noninvasive identification of cause of death and as a guide for necropsy in animals.     

Synthesis of morphiceptin (Tyr-Pro-Phe-Pro-NH(2)) by dipeptidyl aminopeptidase IV derived from Aspergillus oryzae

Morphiceptin (Tyr-Pro-Phe-Pro-NH(2)), tetrapeptide, was synthesized using dipeptidyl aminopeptidase IV (DP IV, EC 3.4.14.5) derived from Aspergillus oryzae RIB 915 as a catalyst. Tyr-Pro-OEt was incubated with Phe-Pro-NH(2) in the presence of DP IV under various conditions of temperature, concentrations of ethylene glycol, pH, reaction time, and others. Morphiceptin was obtained at 40% yield under the optimal reaction conditions: substrate, 4 mM Tyr-Pro-OEt.HCl and 20 mM Phe-Pro-NH(2).HCl; enzyme, DP IV, 0.275 nkat; solvent, 60% ethylene glycol containing 20 mM phosphate buffer at pH 7.0; amine, 4.2 mM diisopropylamine at 4 degrees C for 24 h. Amino group protection was unnecessary for synthesis of morphiceptin by DP IV.     

Erythrocyte sedimentation rate in the dog and cat: Comparison of two methods and influence of packed cell volume, temperature and storage of blood

Erythrocyte sedimentation rates of canine and feline blood were measured by the Wintrobe method and by a capillary method utilizing 75 times 1 mm microhaematocrit tubes. Results obtained with each method were generally similar for both species.
The erythrocyte sedimentation rate (ESR) with the Wintrobe method as well as with the capillary method was inversely related to the packed cell volume (PCV), i. e., the lower the PCV, the higher the ESR. However, there was no consistent relationship between the ESR values obtained by the two methods at all levels of PCV. Wintrobe ESR values were slightly higher than capillary tube values for canine blood having a PCV of 36-60% and for 'reconstituted' canine and feline bloods having a high PCV. In contrast, capillary tube ESR values were slightly higher than Wintrobe values for 'reconstituted' canine blood having a PCV of 8-38 % and for feline blood with a PCV below 30%. It was, therefore, concluded that ESR values obtained by the two methods cannot be considered equivalent.
Only a slight decrease occurred in the ESR of blood held at 4°C for 2-6 hours, whereas the ESR of blood held at room temperature dropped markedly and blood stored for 24 hours at either temperature consistently gave lower values. Therefore, it is recommended that if the ESR cannot be determined soon after sampling, the blood should be stored at 4°C and the test conducted within 6 hours.