A variance-covariance structure to take into account repeated measurements and heteroscedasticity in growth modeling

This study proposes a within-subject variance-covariance (VC) structure to take into account repeated measurements and heteroscedasticity in a context of growth modeling. The VC structure integrates a variance function and a continuous autoregressive covariance structure. It was tested on a nonlinear growth model parameterized with data from permanent sample plots. Using a stand-level approach, basal area growth was independently modeled for red spruce (Picea rubens Sarg.) and balsam fir [Abies balsamea (L.) Mill.] in mixed stands. For both species, the implementation of the VC structure significantly improved the maximum likelihood of the model. In both cases, it efficiently accounted for heteroscedasticity and autocorrelation, since the normalized residuals no longer exhibited departures from the assumptions of independent error terms with homogeneous variances. Moreover, compared with traditional nonlinear least squares (NLS) models, models parameterized with this VC structure may generate more accurate predictions when prior information is available. This case study demonstrates that the implementation of a VC structure may provide parameter estimates that are consistent with asymptotically unbiased variances in a context of nonlinear growth modeling using a stand-level approach. Since the variances are no longer biased, the hypothesis tests performed on the estimates are valid when the number of observations is large.     

西藏苦荞种质资源主要农艺性状分析

为了揭示西藏苦荞种质资源多样性和发掘苦荞资源中的有益基因,利用相关分析、主成分分析和聚类分析等方法对西藏80份苦荞资源的7个主要农艺性状进行了分析。结果表明:西藏苦荞资源存在丰富的遗传多样性,其中主茎粗的遗传变异系数达到36.7%。千粒重与单株粒重呈极显著正相关和极显著偏相关,生育期与千粒重呈极显著负相关和显著负偏相关。应用主成分分析将西藏苦荞7个主要农艺性状简化为4个主成分,其累积贡献率为86.04%,以主茎因子贡献率最高,为41.11%。采用系统聚类分析,将供试材料在遗传距离11.61水平上可聚为4个大类,可区分为株高较矮大粒型、株高中等小粒型、植株矮小大粒型和植株高大茎秆粗壮型。综合聚类分析和主成分分析,苦荞资源中植株较矮、大粒是较为理想的育种材料。     

Stand biometry and leaf area distribution in an old olive grove at Andria, southern Italy

The objectives of this paper were (1) to provide general biometry data for an 80-year-old olive (Olea europea L., cv. Coratina) grove in Andria, southern Italy, and (2) to compare different methods for estimating leaf area distributions. Stand biometry was represented by a stocking density of 132 trees ha^?1, mean spacing of 8.7 m and mean social area (proportional to spacing and tree size) of about 76 m² per tree. Trunk total circumference averaged 110 cm and after subtraction of missing or dead parts of stems averaged 81 cm, projected area of crowns averaged 17.7 m² and the mean tree height was 4.9 m. Leaf distribution was evaluated using calibrated ground-based side photographs through image analysis and through using a simple canopy-layer model (considering hollow volume within tree crowns) and double-Gaussian curves. The mean leaf size was about 5 cm² (distributed in a log-normal manner over the range of 2 to 12 cm²). Considering whole tree crowns, the mean leaf density was about 2.6 m²m^?3; the maximum leaf area occurred in canopy layers between 1.5 to 3 m, tailing with a steeper slope to the crown base and a less steep slope to the tree-top. The foliated volume of olive crowns (mean 33.2 m³) contained on average 145 thousand leaves of the total area of 72.6 m². The corresponding leaf area index on the stand level (LAI _grove = 0.96), was rather low due to low stocking density. However when taking into account only the projected crown areas (and avoiding free space between trees), the mean LAI reached about 3.5 (range from 1–7). The radial pattern of leaf distribution derived from image analysis indicated peak LAI _rad values at a distance from the stem of about 60 to 70% of crown radius in trees of different size. The applicability of different approaches to the estimation of the necessary allometric parameters is discussed.     

Environmental correlates of body size distribution in Cyprinidae (Actinopterygians) depend on phylogenetic scale

The pattern of increasing species body size with increasing latitude has been noticed in different groups of animals. Here, we used seven key environmental factors and independent contrasts to assess body size latitudinal clines in Cyprinidae at two phylogenetic levels (inter‐ and intragenera), which were defined using a genus‐level supertree. Model selection procedures revealed that environmental factors shaping body size variation in Cyprinidae differed according to the phylogenetic scale considered. At the higher phylogenetic level, we found that both temperature (negative effect) and habitat availability (positive effect of drainage basin surface area) constituted mechanistic explanations of large‐scale body size distribution. No temperature‐related body size cline was observed at the intragenus level. Instead, competitive interaction (negative effect of species richness), habitat availability (positive effect of drainage basin surface area), migration ability and available energy (positive effects of glacial coverage and actual evapotranspiration) constitute alternative explanations at this lower phylogenetic scale. We conclude that (i) at the intergenus level, cyprinids do show a tendency to be smaller at high temperatures and larger at low temperatures, (ii) this tendency no longer exists at the intragenus level, (iii) latitude per se is a weak predictor of body size clines whatever the taxonomic level analysed, (iv) generalising geographical body size patterns may be rendered difficult by the superimposition of a series of mechanisms across different taxonomic scales, and (v) habitat size, here acting positively at both taxonomic scales, may play a major role in shaping riverine species body size clines.     

Thigmomorphogenesis versus light in biomechanical growth strategies of saplings of two tropical rain forest tree species

? In the dense tropical rainforest understorey, saplings exhibit different growth strategies aiming at reaching light levels better fitting their ecology. Investing mainly in height growth, at the expense of their width, a lot are close to mechanical instability. Tachigali melinonii, a long living heliophilic tree species, is frequently observed to be extremely slender and supported by neighbours. Such observations suggest an active growth control through the perception of mechanical environment.

? Mechanical environment or light availability, which one is the most influent on growth and slenderness (H/D)? To test this question, we recorded growth of control and staked saplings of two species with contrasting habits and ecology: T. melinonii, and Dicorynia guianensis, along a natural light gradient.

? Dicorynia, the more stable, responded more clearly to the staking treatment, showing slenderness increase when light is available, whereas for Tachigali, only light availability governed growth.

? For Tachigali, growth allocation is mainly governed by light availability and ontogeny, whereas Dicorynia is probably similar to the average tree strategy, using the thigmomorphogenetic physiological process to control its stability.

     

西藏湿地保护现状及发展策略探讨

分析西藏湿地现状与主要问题,即湿地及草原植被退化、土地沙化与盐碱化、湿地生物多样性减少、湿地污染、草原火灾等,以及问题产生的原因;提出湿地保护策略为加强湿地自然保护区新建力度、加大对现有湿地自然保护区的能力建设、逐步修复重要湿地功能、适度合理利用湿地。     

Strip-till as a means of decreasing spatial variability of winter barley within a field scale

The tillage system, which joins soil tillage, fertilisation, and seed sowing in one pass of a machine, is rarely used in cereal cultivation. This research aimed to study whether strip-till and conventional tillage (post-harvest ripping and mixing of stubble, ploughing, pre-sowing fertilisation, and seedbed preparation) differ in plant density, yield components, and grain yield of winter barley cultivated on Cambisol in a region with low rainfall, the annual average is about 500?mm. To reach this aim, a two-year, large-plot experiment was conducted in a production field. The soil within the field was spatially variable in texture, moisture, and chemical and biological properties, CV 2.3% do 29.6%. Strip-till had lower within-field spatial variability of winter barley grain yield than conventional tillage. The standard deviation was 0.36?t?ha^?1, 0.67?t?ha^?1 in the first year and 0.12?t?ha^?1, 0.30?t?ha^?1 in the second year, respectively. During the period of limited rainfall, strip-till had greater uniformity of plants after emergence; after the winter with low air temperature and a low amount of snow, it had greater plant density. Thus, strip-till can reduce variability of plants and their yield within a field, especially in adverse environmental conditions.     

Characterization of odor-active volatiles in apples: influence of cultivars and maturity stage

The aroma and texture of three different apple cultivars, harvested at three maturity stages, were analyzed by sensory and instrumental analysis. The emphasis was on the identification of the most potent odorant volatiles, and the challenge was to separate the few most important flavor compounds, which may be trace chemicals, from the vast number of nonodorant compounds present in apple aroma extracts. Thirty-six odorant compounds were detected, 24 of which were common to all extracts. A significant correlation coefficient was found between the aroma intensity scores and overall quantity of the odorant volatiles, which shows that the development of sensory aroma is similar to that of odorant volatiles. This study also showed that the parameters measured by penetrometry and compression were highly correlated with sensory textural attributes. The determination of the optimal maturity stage for different apple cultivars by the usual parameters, such as color, diameter, total soluble solids, and titrable acidity, may not be sufficient to determine the optimal sensory quality for consumers. Moreover, the sensory quality of fruits changes during maturation in a different way from one cultivar to another, and this should be taken into account.     

Time-resolved spectral studies of blue-green fluorescence of artichoke (Cynara cardunculus L. Var. Scolymus) leaves: identification of chlorogenic acid as one of the major fluorophores and age-mediated changes

Synchrotron radiation and the time-correlated single-photon counting technique were used to investigate the spectral and time-resolved characteristics of blue-green fluorescence (BGF) of artichoke leaves. Leaves emitted BGF under ultraviolet (UV) excitation; the abaxial side was much more fluorescent than the adaxial side, and in both cases, the youngest leaves were much more fluorescent than the oldest ones. The BGF of artichoke leaves was dominated by the presence of hydroxycinnamic acids. A decrease in the percentage of BGF attributable to the very short kinetic component (from 42 to 20%), in the shape of the BGF excitation spectra, and chlorogenic acid concentrations indicate that there is a loss of hydroxycinnamic acid with leaf age. Studies on excitation, emission, and synchronized fluorescence spectra of leaves and trichomes and chlorogenic acid contents indicate that chlorogenic acid is one of the main blue-green fluorophores in artichoke leaves. Results of the present study indicate that 20-42% (i.e., the very short kinetic component) of the overall BGF is emitted by chlorogenic acid. Time-resolved BGF measurements could be a means to extract information on chlorogenic acid fluorescence from the overall leaf BGF.     

Evaluation of hemostatic analytes after use of hypertonic saline solution combined with colloids for resuscitation of dogs with hypovolemia.

The effects of hypertonic saline solution (HTSS) combined with colloids on hemostatic analytes were studied in 15 dogs. The analytes evaluated included platelet counts, one-stage prothrombin time, activated partial thromboplastin time, von Willebrand's factor antigen (vWf:Ag), and buccal mucosa bleeding times. The dogs were anesthetized, and jugular phlebotomy was used to induced hypovolemia (mean arterial blood pressure = 50 mm of Hg). Treatment dogs (n = 12) were resuscitated by infusion (6 ml/kg of body weight) of 1 of 3 solutions: HTSS combined with 6% dextran 70, 6% hetastarch, or 10% pentastarch. The control dogs (n = 3) were autotransfused. Hemostatic analytes were evaluated prior to induction of hypovolemia (baseline) and then after resuscitation (after 30 minutes of sustained hypovolemia) at 0.25, 0.5, 1, 6 and 24 hours. All treatment dogs responded rapidly and dramatically to resuscitation with hypertonic solutions. Clinically apparent hemostatic defects (epistaxis, petechiae, hematoma) were not observed in any dog. All coagulation variables evaluated, with the exception of vWf:Ag, remained within reference ranges over the 24-hour period. The vWf:Ag values were not statistically different than values from control dogs, and actual values were only slightly lower than reference ranges. Significant (P < or = 0.04) differences were detected for one-stage prothrombin time, but did not exceed reference ranges. The results of this study suggested that small volume HTSS/colloid solutions do not cause significant alterations in hemostatic analytes and should be considered for initial treatment of hypovolemic or hemorrhagic shock.