Effects of tree species diversity on leaf litter decomposition process in semi-arid Mediterranean oak forests

European Journal of Forest Research - Many studies have been conducted on the effects of changes in plant diversity and species composition on ecosystem functioning and plant productivity due to...     

Autophagy and the nutritional signaling pathway

During their growth and development, animals adapt to tremendous changes in order to survive. These include responses to both environmental and physiological changes and autophagy is one of most important adaptive and regulatory mechanisms. Autophagy is defined as an autolytic process to clear damaged cellular organelles and recycle the nutrients via lysosomic degradation. The process of autophagy responds to special conditions such as nutrient withdrawal. Once autophagy is induced, phagophores form and then elongate and curve to form autophagosomes. Autophagosomes then engulf cargo, fuse with endosomes, and finally fuse with lysosomes for maturation. During the initiation process, the ATG1/ULK1 (unc-51-like kinase 1) and VPS34 (which encodes a class III phosphatidylinositol (PtdIns) 3-kinase) complexes are critical in recruitment and assembly of other complexes required for autophagy. The process of autophagy is regulated by autophagy related genes (ATGs). Amino acid and energy starvation mediate autophagy by activating mTORC1 (mammalian target of rapamycin) and AMP-activated protein kinase (AMPK). AMPK is the energy status sensor, the core nutrient signaling component and the metabolic kinase of cells. This review mainly focuses on the mechanism of autophagy regulated by nutrient signaling especially for the two important complexes, ULK1 and VPS34.     

Therapeutic effects of biguanide vs. statin in polycystic ovary syndrome: a randomized clinical trial

Various classes of medication are currently being used in Polycystic Ovary Syndrome (PCOS) patients including the biguanides and the statins. However, their efficacies are rarely compared. This study aimed to compare efficacy ofa biguanide and a statin in treating PCOS. In a randomized double-blind clinical trial, 400 women with PCOS were recruited within 15 months in Taleghani Hospital. They randomly received either a biguanide (metformin 500 mg three times daily) or a statin (simvastatin 20 mg daily) for three consecutive months. Changes of clinical and laboratory variables were compared. In the biguanide group the serum glucose status (abnormal fasting and non-fasting sugar and insulin levels and percentage of hyperinsulinemic cases) and menstrual abnormalities improved significantly after treatment (p < 0.05). In the statin group the lipid profile status (abnormal total cholesterol, high and low density lipoproteins), C-Reactive Protein (CRP), serum dehydroepiandrosterone sulfate, hyperinsulinemia, severity of acne and menstrual abnormalities improved significantly after treatment (p < 0.05). Comparing the two groups, the improvements in fasting blood sugar and serum insulin levels were significantly better in the biguanide group (p = 0.04 for both parameters); whereas the improvements in serum total cholesterol (p < 0.001), low density lipoprotein (p < 0.001), CRP (p < 0.001) and acne status (p = 0.04) were significantly superior in the statin receivers. Based on these results, each medication is only effective on some aspects of the disease. Overall, the simvastatin was superior to metformin with regard to the number of beneficial effects.     

cDNA-AFLP technique discloses differential gene expression in response to salinity in wheat (Triticum aestivum L.)

Genetic Resources and Crop Evolution - Salinity is one of the well-known abiotic stresses resulting in loss of wheat yield. The identification of differentially induced genes and then becoming...     

Evaluation of apoptosis in long-term culture of vitrified mouse whole ovaries

The purpose of the present study was to investigate the development of follicles and incidence of apoptosis in vitrified neonatal mouse ovaries cultured in vitro in the presence of leukemia inhibitory factor (LIF). The vitrified and non-vitrified ovaries of 1-week-old mouse were cultured in the presence or absence of LIF for 7 days. At the beginning and at the end of culture period in each ovary of all groups of study the mean area and the development of ovarian follicles were analyzed; moreover, the incidence of apoptosis was assessed by transmission electron microscopy, terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate nick end-labeling (TUNEL) method, DNA laddering and caspase-3/7 activity technique. The hormonal assay was done on the conditioned media collected during culture period. The proportion of preantral follicles and the levels of hormones increased in all cultured groups and it was significantly higher in LIF treated groups than in their control (P < 0.001). The ultrastructural characteristics of cell death, DNA fragmentation and TUNEL positive signals were prominent in vitrified cultured ovaries. The level of caspase-3/7 activity was higher in vitrified cultured ovaries.     

Evaluation of photosynthesis,physiological, and biochemical responses of chickpea (Cicer arietinum L. cv. Pirouz) under water deficit stress and use of vermicompost fertilizer

One goal in the face of drought stress conditions is to increase growth and yield through the reduction of negative effects of stress. Vermicompost can play an effective role in plant growth and development and in reducing harmful effects of various environmental stresses on plants due to its porous structure, high water storage capacity, having hormone-like substances, plant growth regulators, and high levels of macro and micro nutrients. This study considered the physiological, biochemical, and photosynthetic responses of the chickpea to different combinations of vermicompost and water stress in a greenhouse environment. Two factors were involved, addition of vermicompost to soil at four ratios: control (100 wt% (weight percentage) soil); 10 wt% vermicompost+90% soil; 20 wt% vermicompost+80 wt% soil; 30 wt% vermicompost+70 wt% soil weight percentage, and treatment of water stress at three levels including 75, 50, and 25% of field capacity. The results showed that vermicompost had a significant effect on all traits under stress and non-stress conditions. Application of vermicompost in soil, especially at the levels of 20 and 30 wt% significantly increased all studied traits under non-stress conditions. Under moderate stress conditions, vermicompost at 30 wt% treatment resulted in a significant increase in the photosynthetic pigments, CO₂ assimilation rate, internal leaf CO₂ concentration, transpiration, the maximal quantum yield of photosystem II (PSII) photochemistry (F_v/F_m), concentrations of Ca and K in root and leaf tissues, proline and soluble protein contents in root tissues. Peroxidase (POX) and catalase (CAT) enzyme activities decreased significantly with increasing proportions of vermicompost, but the activity of superoxide dismutase was not significantly different. In conclusion, the above results showed that vermicompost fertilizer had a positive effect on physiological, biochemical, and photosynthetic responses of chickpea under non-stress and moderate stress conditions, but no positive effect was determined under severe water stress.     

Comparative analysis of genetic diversity using molecular and morphometric markers in Andrographis paniculata (Burm. f.) Nees

Andrographis paniculata is a medicinal plant of immense therapeutic value. The present study was aimed to elucidate its genetic diversity based on morphochemical and RAPD markers from 53 accessions belonging to 5 eco-geographic regions. Analysis of variance and D ² statistics revealed significant differences in all the metric traits and sufficient inter-cluster distances indicating considerable diversity among the accessions. The complementary approach of RAPD was used to evaluate the genetic dissimilarities among all the accessions using 6 highly polymorphic primers. The average proportion of polymorphic loci across primers was 96.28%. The molecular genetic diversity based on Shannon index per primer averaged 5.585 with values ranging from 3.08 to 8.70 indicating towards wide genetic base. RAPD based UPGMA and D ² cluster analysis also revealed that various accessions available in different eco-geographic regions might have originated from native places of wild abundance. Similarity matrices were generated for molecular markers and morphometric data to determine the degree of congruence between the two. A highly significant but low correlation (r = 0.547, P < 0.001) was obtained thus implying the correspondence between the two. The species is hermaphroditic and a habitual inbreeder. The present study yielded a typical triangular congruence between its breeding system, morphometric traits and RAPD markers thus elucidating the usefulness of complementary approaches to make diversity analysis more explanatory and purposeful for optimum genetic amelioration and effective conservation of its genotypic variability.     

The effect of preceding crop on wheat grain zinc concentration and its relationship to total amino acids and dissolved organic carbon in rhizosphere soil solution

The role of cropping systems practices in agronomic biofortification programs with the aim of increasing micronutrient density in food plants has to be clarified. In these field experiments, the effect of four preceding crops, i.e., sunflower (Heliantus annus L. cv. Allstar), Sudan grass (Sorghum bicolor L. cv. Speed Feed), clover (Trifolium pratense L.), and safflower (Carthamus tinctorius L. cv. Koseh-e-Isfahan), on the total amino acids (AA) and dissolved organic carbon (DOC) concentration in rhizosphere soil solution and grain Zn content of successive wheat (Triticum aestivum cvs. Back Cross and Kavir) was investigated during 2009–2010 and 2010–2011 growing seasons. A fallow treatment was also considered as the control. In both growing seasons, preceding crops increased the concentrations of AA and DOC in the soil solution in comparison with the fallow control treatment; although the magnitude of this increase varied upon the preceding crop type and wheat cultivar. In general, clover and sunflower had greater effect on increasing soil solution DOC probably due to higher decomposability of their litter residues in soil. Preceding crops increased the total AA concentration, on average, by 45.9 % for the first year and 10.8 % for the second year. The preceding sorghum and clover had the highest and lowest influence on the concentration of AA in wheat rhizosphere soil solution, respectively. The preceding crops increased grain wheat Zn concentration and content over the fallow control treatment, although this effect was dependent on the crop type. For “Back Cross”, a positive and significant correlation was found between grain Zn concentration and soil solution DOC concentration (r?=?0.60, P?<?0.05) and particularly AA (r?=?0.76, P?<?0.001), while no such correlation was found for “Kavir”. At the second growing season, the concentration of AA in the rhizosphere of Back Cross was greater than that of Kavir, probably due to higher release of these compounds from the roots. According to the results, the preceding crop significantly affect grain Zn density of the successive wheat, that is, at least in part, by releasing soluble organic ligands into soil solution.     

The Effects of Sodium Alginate on Quality of Rainbow Trout (Oncorhynchus mykiss) Fillets Stored at 4 ± 2°C

Edible coating is a novel food packaging technology for controlling the growth of spoilage bacteria and chemical changes in ready-to-eat food products. Fresh fish are highly perishable foodstuffs and are very susceptible to spoilage. A sodium alginate coating was used to maintain the quality of rainbow trout fillets in chilled storage over a period of 20 days. Fillet samples were coated with an aqueous solution of 3% sodium alginate and then stored at chilled temperature (4 ± 2°C). The control and coated samples were analyzed periodically (every 5 days) for microbial (aerobic plate count and psychrotrophic count), chemical (total volatile basic nitrogen, thiobarbituric acid, peroxide value), and sensory characteristics. The results indicated that the sodium alginate coating helped protect the quality characteristics of treated fresh fish fillets and prolonged the shelf life during chilled storage of rainbow trout fillets.