The extent of genetic diversity among Vanilla species: Comparative results for RAPD and ISSR

Vanilla is a large genus of about 110 species in the orchid family (Orchidaceae), including the species Vanilla planifolia from which commercial vanilla flavoring is derived. Since most species of vanilla are considered rare and endangered there is an urgent need to conserve them through genetic analysis and propagation/conservation studies on this crop.The present study investigated the genetic diversity among nine leafy- and leaf-less Vanilla species employing 30 decamer RAPD primers and 10 ISSR primers. The species under study were diverse and displayed a range of variability (0–66% and 0–81% for RAPD and ISSR, respectively). A total of 154 RAPD polymorphic markers (83.24%, h = 0.378) and 93 ISSR polymorphic markers (86.11%, h = 0.363) were used to generate a genetic similarity matrix followed by the cluster analysis. Specific groupings were revealed by each cluster analysis with slight variation between two different markers. Among the nine species studied, V. planifolia, Vanilla aphylla and Vanilla tahitensis revealed very low level of variation within their collections, thus indicating a narrow genetic base. The large genetic distance of Vanilla andamanica from other species suggests its different origin. A close genetic affinity was observed between the pairs V. planifolia, V. tahitensis and Vanilla albida, V. aphylla. These are the first comparative results for RAPD and ISSR reporting inter-relationship among nine cultivated, wild and hybrid Vanilla species.     

Performance of broiler chicks fed on alkali‐treated neem (Azadirachta indica) kernel cake as a protein supplement

1. An experiment was conducted to evaluate growth and nutrient efficiency of broiler chicks from 3 to 42 d fed on diets containing alkali‐treated neem (Azadirachta indica A. juss) kernel cake (NKC) as a protein supplement in place of peanut meal (PNM).

2. NKC was treated with sodium hydroxide at 10 (ANKC 1) or 20 g (ANKC 2)/kg and incorporated into the test diets at 135 or 300 g/kg to replace 50 (low—L) or 100 (High—H) % of the PNM protein of the reference diet.

3. Despite comparable retentions of dry matter and total carbohydrate on L‐ANKC 1 and 2, fibre on L‐and H‐ANKC 2 and nitrogen, calcium and acid detergent fibre on all experimental diets compared to the retentions of chicks on the reference diet, only the chicks fed L‐ANKG 2 were found to grow and utilise food as well as those on the reference diet.

4. The activities of serum alkaline phosphatase on H‐ANKC 1 and alanine amino transferase on all test diets were depressed (P < 0.05), but the activity of serum aspartate amino transferase, total erythrocyte count and concentration of blood haemoglobin and urea were similar in all chicks.

5. No significant differences were noticed in the qualitative and quantitative characteristics of the meat of chicks fed on the reference diet and on diets incorporating ANKC at the lower concentrations. Feeding ANKC protein did not impart any untoward taste as evaluated in pressure cooked meat by a semitrained panel on a 7 point Hedonic scale.

6. Except for duodenal and jejunal inflammation in chicks on both reference and test diets, all the vital organs were normal, ruling out any adverse affects caused by residual neem bitters.

7. Comparable performance and cost of chicks fed on the reference and L‐ANKC 2 diets, warrants the utilisation of hitherto wasted protein‐rich NKC after alkali treatment in broiler chick diets to spare peanut meal for human consumption in developing countries.     

Biology and life table of Diaeretiella rapae against Brevicoryne brassicae on different cultivars of cauliflower

Phytoparasitica - Diaeretiella rapae (McIntosh) (Hymenoptera: Braconidae) is one of the most promising, effective and a common endoparasitoid of different aphid species including cabbage aphid,...     

Composts Vary in Their Effect on Soil P Pools and P Uptake by Wheat

With diminishing world reserves of phosphorus (P) deposits and rising fertilizer prices, it is important to find alternate sources of P for crops. The aim of this research was to evaluate the effect of four different composts C1 (animal manure and straw), C2 (garden waste), C3 (wood chips and bark), and C4 (kitchen waste) on soil P pools and P uptake by wheat on 14, 28, and 72 days after compost application. The composts were applied as a 2.5 cm thick layer on the soil surface. During sampling, only the soil underlying compost was sampled. Soil pH and total organic carbon were not affected by the amendments. Soil respiration was significantly higher in compost-amended soils compared with the unamended soil except with C4 on day 72. Addition of composts increased plant growth, and P uptake being highest on day 72 with C1 and C4. With little effect on available P concentration on day 14, there was a conversion of organic P into inorganic P in the compost treatments suggesting net mineralization of organic P on day 28. On day 72, the concentrations of the less labile P forms were higher in the compost treatments compared with the unamended suggesting precipitation and fixation as well as synthesis of organic P. This study showed that mulching with composts having high available and total P concentrations can provide plants with P and also increase soil P concentrations which could reduce the fertilizer requirement for the following crop.     

Efficiency and energy use in puddling of lowland rice grown on Vertisols in Central India

Transplanting of rice seedling in puddled soil is one of the most widely used cultivation practices. The present research is aimed at determining what specific implements are needed to obtain optimal puddle bed for transplantating. Puddling experiments were carried out by the use of pair of bullocks with traditional country plough (T₁), pair of bullocks with lug wheel puddler (T₂), power tiller with rotary puddler (T₃), tractor with cage wheel and 9-tine cultivator (T₄) and tractor with cage wheel and rotavator (T₅). One summer ploughing was done at friable moisture condition (18.6% db) and then tilled soil was flooded to saturation (24 h) for preparation of puddled bed. Weeding efficiency, puddling depth, percentage increase in bulk density, puddling index, percolation rate and grain yield of paddy were studied for the above treatments. Puddling performance by different implements in comparison to the traditional animal drawn country plough (T₁) shows that there is a definite reduction in time requirement for field preparation. Increase in weeding efficiency, bulk density, grain yield and puddling index were also observed. The highest values of weeding efficiency and puddling index were found 98.6% and 79.3, respectively, for rotavator (T₅). The total time requirement for preparation of puddle field for treatment T₄ (tractor with cultivator) was found to be the lowest (9.4 h ha⁻¹) with 67% weeding efficiency and 62.7 puddling index as compared to all other alternatives tested. Energy requirement for preparation of puddle field was found highest (2390 MJ ha⁻¹) for rotavator (T₅) followed by T₃, T₄, T₁, and T₂ treatments.     

Papaya yellow leaf curl virus: A newly identified begomovirus infecting Carica papaya L. from the Indian Subcontinent

India is one of the world’s largest producers of papaya. Viruses, mainly begomoviruses and potyviruses, cause a significant loss in papaya production. The study described here has identified a new species of begomovirus and a new species of betasatellite infecting Carica papaya in India. The sequences of the begomovirus and betasatellite show 90.03% nucleotide sequence identity to an isolate of Radish leaf curl virus and 92.25% identity to an isolate of Tomato leaf curl betasatellite, respectively. Maximum likelihood phylogenetic tree of begomovirus sequence of isolate DP2 (KX353622) showed distant relationships with previously characterised begomoviruses. Recombination analysis proposed six recombination breakpoints in begomovirus genome with other geographical begomovirus isolates.     

Segmentation of 3D images of plant tissues at multiple scales using the level set method

Background

Developmental biology has made great strides in recent years towards the quantification of cellular properties during development. This requires tissues to be imaged and segmented to generate computerised versions that can be easily analysed. In this context, one of the principal technical challenges remains the faithful detection of cellular contours, principally due to variations in image intensity throughout the tissue. Watershed segmentation methods are especially vulnerable to these variations, generating multiple errors due notably to the incorrect detection of the outer surface of the tissue.

Results

We use the level set method (LSM) to improve the accuracy of the watershed segmentation in different ways. First, we detect the outer surface of the tissue, reducing the impact of low and variable contrast at the surface during imaging. Second, we demonstrate a new edge function for a level set, based on second order derivatives of the image, to segment individual cells. Finally, we also show that the LSM can be used to segment nuclei within the tissue.

Conclusion

The watershed segmentation of the outer cell layer is demonstrably improved when coupled with the LSM-based surface detection step. The tool can also be used to improve watershed segmentation at cell-scale, as well as to segment nuclei within a tissue. The improved segmentation increases the quality of analysis, and the surface detected by our algorithm may be used to calculate local curvature or adapted for other uses, such as mathematical simulations.

     

Frequency and fertility restoration efficiency of Rf3 and Rf4 genes in Indian rice

Identification of new parental lines is crucial for developing ecology‐specific hybrids with ideal agronomic performance. We screened a total of 570 different ecology‐specific Indian rice varieties for the presence of fertility restorer genes, Rf3 and Rf4 using tightly linked markers DRRM Rf3‐10 and RM6100, respectively. Among these varieties, 13% carried Rf3Rf3/Rf4Rf4, 31% carried rf3rf3/rf4rf4, 6% carried Rf3Rf3/rf4rf4 and remaining 50% carried Rf4Rf4/rf3rf3 allelic combinations. A mini set of 40 varieties with variable allelic combinations of fertility restorer genes were testcrossed with WA and Kalinga‐based CMS lines. All the 80 F₁s were evaluated for spikelet fertility and fertility restoration ability. Rf3Rf3/rf4rf4 genotypes mostly behaved as partial maintainers or partial restorers. In contrast, rf3rf3/Rf4Rf4 genotypes were partial or effective restorers. However, double dominant genotypes showed better fertility restoration than the genotypes containing Rf3 or Rf4 individually. Some of the genotypes showed unexpected restoration pattern implying occurrence of other fertility restorer(s) apart from Rf3 and Rf4. The perfect restorers and maintainers identified in this study can be directly used in hybrid rice breeding.