Genomewide association study reveals novel quantitative trait loci associated with resistance towards Septoria tritici blotch in North European winter wheat

Fungal diseases are a major constraint for wheat production. Effective disease resistance is essential for ensuring a high production quality and yield. One of the most severe fungal diseases of wheat is Septoria tritici blotch (STB), which influences wheat production across the world. In this study, genomewide association mapping was used to identify new chromosomal regions on the wheat genome conferring effective resistance towards STB. A winter wheat population of 164 North European varieties and breeding lines was genotyped with 15K single nucleotide polymorphism (SNP) wheat array. The varieties were evaluated for STB in field trials at three locations in Denmark and across 3 years. The association analysis revealed four quantitative trait loci, on chromosomes 1B, 2A, 5D and 7A, highly associated with STB resistance. By comparing varieties containing several quantitative trait loci (QTL) with varieties containing none of the found QTL, a significant difference was found in the mean disease score. This indicates that an effective resistance can be obtained by pyramiding several QTL.     

Development and application of functional markers in maize

Summary Functional markers (FMs) are derived from polymorphic sites within genes causally involved in phenotypic trait variation (Andersen, J.R. & T. Lübberstedt, 2003. Trends Plant Sci 8: 554–560). FM development requires allele sequences of functionally characterized genes from which polymorphic, functional motifs affecting plant phenotype can be identified. In maize and other species with low levels of linkage disequilibrium, association studies have the potential to identify sequence motifs, such as a few nucleotides or insertions/deletions, affecting trait expression. In one of the pioneering studies, nine sequence motifs in the dwarf8 gene of maize were shown to be associated with variation for flowering time (Thornsberry, J.M., M.M. Goodman, J. Doebley, S. Kresovich, D. Nielsen & E.S. Buckler, 2001. Nat Genet 28: 286–289). Proof of sequence motif function can be obtained by comparing isogenic genotypes differing in single sequence motifs. At current, the most appropriate approach for this purpose in crops is targeting induced local lesions in genomes (TILLING) (McCallum, C.M., L. Comai, E.A. Greene & S. Henikoff, 2000. Nat Biotechnol 18: 455–457). In central Europe, maize is mainly grown as forage crop, with forage quality as major trait, which can be determined as proportion of digestible neutral detergent fiber (DNDF). Brown midrib gene knock out mutations have been shown to be beneficial for forage quality but disadvantageous for overall agronomic performance. Two brown midrib genes (bm1 and bm3) have been shown to be involved in monolignol biosynthesis. These two and additional lignin biosynthesis genes have been isolated based on sequence homology. Additional candidate genes putatively affecting forage quality have been identified by expression profiling using, e.g., isogenic bm lines. Furthermore, we identified an association between a polymorphism at the COMT locus and DNDF in a collection of European elite inbred lines.     

Remote sensing and in situ-based estimates of evapotranspiration for subirrigated meadow,dry valley,and upland dune ecosystems in the semi-arid sand hills of Nebraska,USA

Water consumed through evapotranspiration (ET) impacts local and regional hydrologic regimes on various spatial and temporal scales. Estimating ET in the Great Plains is a prerequisite for effective regional water resource management of the Ogallala (High Plains) Aquifer, which supplies vital water resources in the form of irrigation for extensive agricultural production. The Sand Hills region of Nebraska is one of the largest grass-stabilized eolian (windblown) sand dune formations in the world, with an area of roughly 50,000–60,000 km² that supports a system of five major land cover types: (1) lakes, (2) wetlands (with lakes, ~5%), (3) subirrigated meadows (water table is within ~1 m of surface; ~10%), (4) dry valleys (water table is 1–10 m below surface; ~20%), and (5) upland dunes (water table is more than 10 m below surface; ~65%). Fully understanding the hydrologic regime of these different ecosystems is a fundamental challenge in regional water resource assessment. The surface energy and water balances were analyzed using Bowen Ratio Energy Balance Systems (BREBS) at three locations: (1) a meadow, (2) a valley, and (3) an upland dune. Measurement of the energy budget by BREBS, in concert with Landsat remote sensing image processing for 2004 reveals strong spatial gradients between sites in latent heat flux that are associated with undulating topographic relief. We find that daily estimates of ET from BREBS measurements and remote sensing agree well, with an uncertainty within 1 mm, which is encouraging when applying remote sensing results across such a broad spatial scale and undulating topography.     

Squaring the circle: reconciling fishing and conservation of aquatic ecosystems

Size‐at‐entry regulations in fisheries cause major disruption to aquatic ecosystems, including truncation of age‐ and size‐structures, destabilization of fish stocks, directional selection on phenotypic traits and a by‐catch of unwanted species and sizes. Here, we use simple dynamic models of size‐spectra to examine an alternative, so‐called balanced harvesting. Balanced harvesting helps in retaining the approximate power‐law size‐structure of natural ecosystems, whereas size‐at‐entry regulations do not. Balanced harvesting is less likely to destabilize steady states than size‐at‐entry regulations set close to the size at maturation. Surprisingly, our numerical results suggest that steady‐state biomass yield can be substantially increased by switching from size‐at‐entry to balanced harvesting. On the basis of these results, we argue that the goals of conservation and of greater yields seem less difficult to reconcile than have previously been thought. However, to work towards these goals require a change in our approach to fishing.     

Response of Winter Manure Application on Surface Runoff Water Quantity and Quality from Small Watersheds in South Dakota

Manure application on frozen soil, which is a common practice in the upper Midwest of USA, results in degraded soil and water quality. During snowmelt or precipitation events, water runoff carries nutrients into nearby streams and impairs the water quality. There is a need, therefore, to identify improved management of manure application in the soils. This study was conducted to assess water quality impacts associated following manure application during winter months when soil is completely covered with snow. The study site included three watersheds, named south (SW), east (CW), and north (NW) managed with a corn (Zea mays L.)-soybean (Glycine max L.) rotation located in South Dakota. The SW and NW were used as treatment, and CW as the control watershed. The treatments included manure application on the upper half of the SW and lower half of the NW, and CW received no manure application. This study showed that manure improved soil properties including infiltration rate and organic matter. Nitrogen and phosphorus losses in the surface runoff were higher from NW compared to that of SW. The CW had similar nutrient losses compared to the NW with slight differences. It can be concluded that maintaining a setback distance can help in improving the environmental quality as well as managing the agricultural wastes during the winter months.     

Balanced exploitation and coexistence of interacting,size‐structured,fish species

This paper examines some effects of exploitation on a simple ecosystem containing two interacting fish species, with life histories similar to mackerel (Scomber scombrus) and cod (Gadus morhua), using a dynamic, size‐spectrum model. Such models internalize body growth and mortality from predation, allowing bookkeeping of biomass at a detailed level of individual predation and growth and enabling scaling up to the mass balance of the ecosystem. Exploitation set independently for each species with knife‐edge, size‐at‐entry fishing can lead to collapse of cod. Exploitation to achieve a fixed ratio of yield to productivity across species can also lead to collapse of cod. However, harvesting balanced to the overall productivity of species in the exploited ecosystem exerts a strong force countering such collapse. If balancing across species is applied to a fishery with knife‐edge selection, size distributions are truncated, changing the structure of the system and reducing its resilience to perturbations. If balancing is applied on the basis of productivity at each body size as well as across species, there is less disruption to size‐structure, resilience is increased, and substantially greater biomass yields are possible. We note an identity between the body size at which productivity is maximized and the age at which cohort biomass is maximized. In our numerical results based on detailed bookkeeping of biomass, cohort biomass reaches its maximum at body masses <1 g, unlike standard yield‐per‐recruit models, where body growth and mortality are independent externalities, and cohort biomass is maximized at larger body sizes.     

Peracetic acid degradation and effects on nitrification in recirculating aquaculture systems

Peracetic acid (PAA) is a powerful disinfectant with a wide spectrum of antimicrobial activity. PAA and hydrogen peroxide (HP) degrade easily to oxygen and water and have potential to replace formalin in aquaculture applications to control fish pathogens, for example the ectoparasite, Ichthyophthirius multifiliis.We studied water phase PAA and HP decay in three aquaculture situations, i) batch experiments with two types of system waters, ii) PAA decay at different fish densities, and iii) degradation of PAA in submerged biofilters of recirculating aquaculture systems (RAS). Furthermore, effect of PAA on the nitrification activity and the composition of the nitrifying population were investigated.PAA and HP decay showed first order kinetics. High dosage PAA/HP in water with low COD inhibited HP removal, which was not observed in water having a higher COD content. PAA decay was significantly related to fish stocking density, with half life constants for PAA of 4.6 and 1.7 h at 12 and 63 kg m^− 3, respectively.PAA application to RAS biofilter showed rapid exponentially decay with half life constants of less than 1 h, three to five times faster than the water phase decay rates.Biofilter surface specific PAA removal rates ranged from 4.6 to 13.9 mg PAA m^− 2 h^− 1 and was positively correlated to the nominal dosage. Low PAA additions (1.0 mg L^− 1) caused only minor impaired nitrification, in contrast to PAA application of 2.0 and 3.0 mg L^− 1, where nitrite levels were significantly increased over a prolonged period, albeit without fish mortality. The dominant ammonium oxidizer was Nitrosomonas oligotropha and the dominant nitrite oxidizer was Nitrospira. Based on the present findings and other recent results from field and in vitro studies, application perspectives of PAA are discussed.     

Angler behaviour and implications for management ‐ catch‐and‐release among marine angling tourists in Norway

The role of recreational fisheries in the competition for marine resources is increasingly recognised. Their contribution in stock dynamics needs to be accounted for in assessments and management. Management regulations should be based on scientific advice on human and biological dimensions to be effective in reaching their goals. A survey among marine angling tourists staying in fishing camps in two study areas in Norway was conducted to study catch‐and‐release (C&R) behaviour. Although C&R has been assumed to be low in many marine recreational fisheries, this survey showed that for some species, more than 60% of the catch was released. As C&R may be associated with post‐release mortalities, the current management system could be inefficient towards its aim of reducing fishing mortality. It was concluded that it is necessary to quantify release mortalities, to consider C&R behaviour in future management decisions, and to minimise the potential negative impacts of C&R through handling guidelines.     

Balanced harvesting can emerge from fishing decisions by individual fishers in a small‐scale fishery

Catching fish in proportion to their productivity, termed balanced harvesting, has been suggested as a basis for the ecosystem approach to fishing. Balanced harvesting has been criticized as uneconomical and unachievable because of the level of micromanagement it would require. Here, we investigate the consequences of allowing a fixed number of fishers in a small‐scale fishery to choose what size fish to attempt to catch. We examine this from a game‐theoretic perspective and test our predictions using an agent‐based model for fishers’ decisions coupled with a size‐spectrum model for the dynamics of a single fish species. We show that small‐scale gillnet fishers, operating without size‐based regulations, would end up catching small and large fish in proportion to their productivity, in other words balanced harvesting. This is significant because it shows that, far from being unachievable, balanced harvesting can emerge without external intervention under some circumstances. Controls are needed to prevent overfishing, but minimum size regulations alone are not sufficient to achieve this, and actually reduce the sustainable yield by confining fishing to a relatively unproductive part of the size‐spectrum. Our findings are particularly relevant for small‐scale fisheries in areas where there is poverty and malnutrition because here provision of biomass for food is more important than the market value of the catch.