In vitro susceptibility of Brachyspira hyodysenteriae to organic acids and essential oil components

The antibacterial potential of organic acids and essential oil components against Brachyspira hyodysenteriae, the causative pathogen of swine dysentery, was evaluated. Minimum inhibitory concentrations (MIC) of 15 compounds were determined at pH 7.2 and pH 6.0, using a broth microdilution assay. In addition, possible synergism was determined. MIC values for the three tested strains were similar. For organic acids, MIC values at pH 6.0 were lower than at pH 7.2. B. hyodysenteriae was most sensitive to cinnamaldehyde and lauric acid, with MIC values <1.5 mM. Most antibacterial effects of binary combinations were additive, however, for thymol and carvacrol, synergism could be observed. In vitro results demonstrate the antibacterial action of certain essential oil components and organic acids against B. hyodysenteriae.     

Predicting the dispersion of sprat larvae (Sprattus sprattus (L.)) in the German Bight

Sprat (Sprattus sprattus (L.)) larval dispersal in the German Bight is predicted with a model system consisting of two three-dimensional circulation models and a three-dimensional transport model. Horizontal distribution data for specific length classes of larvae, obtained from field surveys carried out in the German Bight during summer 1991, are used as initial conditions for the starting points of the tracers in the transport model. Sprat larval distributions are predicted and are compared with distributions of the appropriate length class of larvae observed during a subsequent cruise about 3 weeks later. The predicted larval (tracer) distributions compare favourably to observed larvae distributions in the inner model areas but not in the areas close to the coast. Factors contributing to inaccurate predictions are uncertainties in horizontal and vertical larval distributions as well as the model grid resolution, which is too coarse in coastal areas.     

A spatially explicit, individual-based model to assess the role of estuarine nurseries in the early life history of North Sea herring, Clupea harengus

Herring (Clupea harengus) enter and remain within North Sea estuaries during well‐defined periods of their early life history. The costs and benefits of the migrations between offshore spawning grounds and upper, low‐salinity zones of estuarine nurseries are identified using a dynamic state‐variable model, in which the fitness of an individual is maximized by selecting the most profitable habitat. Spatio‐temporal gradients in temperature, turbidity, food availability and predation risk simulate the environment. We modeled predation as a function of temperature, the optical properties of the ambient water, the time allocation of feeding and the abundance of whiting (Merlangius merlangus). Growth and metabolic costs were assessed using a bioenergetic model. Model runs using real input data for the Scheldt estuary (Belgium, The Netherlands) and the southern North Sea show that estuarine residence results in fitter individuals through a considerable increase in survival probability of age‐0 fish. Young herring pay for their migration into safer estuarine water by foregoing growth opportunities at sea. We suggest that temperature and, in particular, the time lag between estuarine and seawater temperatures, acts as a basic cue for herring to navigate in the heterogeneous space between the offshore spawning grounds at sea and the oligohaline nursery zone in estuaries.     

Simulating the dispersion of vertically migrating sprat larvae (Sprattus sprattus (L.)) in the German Bight with a circulation and transport model system

A model system consisting of two three-dimensional circulation models and a three-dimensional transport model is used to simulate the dispersal of sprat larvae (Sprattus sprattus (L.)) in the German Bight. A Northwest European shelf sea model simulates the currents of the North Sea and provides sea surface elevation data for the open boundaries of the German Bight circulation model. The German Bight circulation model has a horizontal grid resolution of 2.75 km and a vertical resolution of 5 m except for the bottom layer. The driving forces of the circulation models are the M2-tide, six-hourly time-dependent wind stress and air pressure fields as well as monthly climatological density fields. The simulated currents serve as input to the transport model. The model area, grid size and the vertical resolution of the transport model are in accordance with the German Bight circulation model. The transport model simulates advection and diffusion using a Monte Carlo method. Furthermore it incorporates a simulation of active vertical movement of the larvae. The vertical migration pattern is dependent on the time of day and size of the larvae and is based on field data from the German Bight. Horizontal larvae distribution data, gained from two out of five field surveys carried out in the German Bight during spring and summer 1991, are used as initial values for the starting points of the tracers in the transport model. Simulated tracer distributions are compared with larval distributions observed during subsequent cruises about 3 weeks later. Discrepancies and similarities between tracer and larval distributions are discussed.     

Seasonal changes in vertical distribution patterns of cod (Gadus morhua) in the Bornholm Basin,central Baltic Sea

Hydroacoustic single fish detection and corresponding hydrographic measurements were used to study seasonal changes in vertical distribution of adult cod (Gadus morhua) in relation to ambient environmental conditions in the Bornholm Basin, central Baltic Sea. Sampling was conducted in April, June and August covering the years 2006–2009. Vertical distribution of individual fish was resolved from hydroacoustic single‐target detection in combination with a fish‐tracking algorithm and related to ambient hydrographic conditions. Based on a generalized linear effect model, both salinity and oxygen concentration were identified as key parameters affecting cod vertical distribution. Results also showed a clear seasonal effect with a more shallow distribution as the spawning season progressed and oxygen concentrations in the deep parts of the basin deteriorated. The upper limit of the distributional range was mostly constituted by the halocline and remained rather constant, whereas increasing oxygen depletion in the deep water layers lifted the lower boundary of the vertical distribution, leading to the observed upward shift in the overall distribution pattern. The results presented in this study highlight a significant shortcoming of the assessment survey design established for this species, as the observed shift in vertical distribution is not taken into account, thus introducing a potential bias into a data series used to tune the ICES standard stock assessment of this species.     

Measurement of the potentially available charge and the dissociation behaviour of humic acid from cobaltihexammine adsorption

The use of a new method for characterizing humic acids based on the measurement of the cobaltihexammine cation exchange capacity (CEC) vs. pH is examined. The method was first verified on a macroporous weak-acid cation exchange resin: charge vs. pH curves and pK values from cobaltihexammine adsorption identify with results from discontinuous acid-base titrations at high ionic strength (5 M). Similar agreement was obtained for humic acids from a Podzol soil: the cobaltihexammine-CEC identifies with the macromolecular charge (from continuous acid-base titrations) at ionic strength of 3 and 5 M, but slightly underestimates (5%) the humic acid charge at 1 M ionic strength. The cobaltihexammine method is suitable for determining the potentially available charge in the pH range 2 to 12 and the intrinsic pK values of humic acids.     

Identification and sensitive endophytic detection of the fire blight pathogen Erwinia amylovora with 23S ribosomal DNA sequences and the polymerase chain reaction

Two short sequences, situated in the bacterial 23S rDNA gene, were used as primers for the PCR detection of Erwinia amylovora bacteria. All 34 E. amylovora strains tested, coming from different geographical and host plant origins and of different virulence, produced a 565-bp PCR fragment. The E. amylovora bacteria could be discriminated from all other phytobacteria with which no PCR product was observed. Only Escherichia coli bacteria were cross-recognized by the production of a weaker PCR band of similar size to E. amylovora . In a fast PCR protocol, where two temperatures were cycled, E. amylovora in pure culture could be detected on gel at concentrations as low as 3 × 10² cfu mL^–1. This corresponds to a detection limit of 1.5 bacteria per PCR. However, reliable PCR detection in woody host plant tissue was only obtained with PVP/PVPP-treated sample extracts. Using E. amylovora -spiked plant extracts and extracts of fruit tree shoots artificially infected with E. amylovora , the PCR detection sensitivity was determined to be 6.6 × 10² cfu mL^–1 of extract. Starting from the plant samples, the PCR detection results were visualized on gels within 5 h.