Assessment of microbial diversity in the river trout Salmo trutta fario L. intestinal tract identified by partial 16S rRNA gene sequence analysis

ABSTRACT:   The microbial diversity of the intestinal tract content of the river trout from two Lithuanian rivers has been investigated by molecular methods: polymerase chain reaction amplification and sequencing of partial 16S rRNA genes. Predominant bacterial populations detected in the river trout intestinal tract from the Skroblus River were Rahnella (21%), from the Žeimena River, Aeromonas (41.7%) and Plesiomonas (22.9%). Buttiauxella agrestis, Budvicia aquatica, Erwinia persicinus , Yersinia mollaretii , Y. kristensenii , Y. rohdei , Moellerella wisconsensis , Obesumbacterium proteus , Pantoea cedenensis , Rahnella aquatilis , and Rahnella sp. from the Enterobacteriaceae family have been detected in the intestinal tract of freshwater salmonid fish for the first time.     

Analysis of the genetic structure of the European eel Anguilla anguilla using the mtDNA D-loop region molecular marker

Sequence variation of the mtDNA D-loop region was analyzed in order to investigate the intraspecific evolution and the population genetic structure of the critically endangered European eel Anguilla anguilla. An additional attempt was made to collect information on the genetic characteristics of groups of eels representing naturally recruited eels to Lithuania and Latvia and introduced into Lithuanian lakes. A total of 148 eels were investigated, and 107 different haplotypes attributed to 39 haplogroups were determined during the study. A dataset comprising 229 sequences was created using the data from both this study and from earlier studies (n = 81). Analysis of this dataset revealed that haplotype diversity was 0.99567, the average number of nucleotide differences was 12.50544, there were 145 polymorphic sites and nucleotide diversity was 0.02426. No significant genetic differentiation was detected between different combinations of samples. However, the population genetic structure of this species could be characterized as a genetic mosaic formed due to the existence of reproductively isolated groups. The existence of a genetic mosaic in this species could be explained by the different evolutionary lineages found in the eel population.     

Phylogenetic analysis of intestinal bacteria of freshwater salmon Salmo salar and sea trout Salmo trutta trutta and diet

The microbial diversity of culturable intestinal microflora of wild freshwater salmonid fishes salmon Salmo salar and sea trout Salmo trutta trutta juveniles (0+ years old) from the same environmental conditions were investigated by means of molecular identification techniques and analysis of diet. Significant differences in the intestinal microbial diversity were observed in different fish species. The predominant group in the intestinal tract of the salmon comprised representatives of the Enterobacteriaceae family (23%), Plesiomonas (19.2%) and Carnobacterium (15.3%). Predominant microbiota in sea trout intestinal tract were Enterobacteriaceae (52%), Aeromonas (22%) and Pseudomonas (14%). The results show that Enterobacteriaceae were predominant in the intestinal tract of the salmon and the sea trout juveniles raised on diets of different compositions. However, molecular identification of the intestinal microbiota at the species or genus level revealed differences in these fish species. Bacteria in the hindgut of salmon included Pragia and Serratia. However, bacteria in the gut contents of sea trout from the Enterobacteriaceae family were Buttiauxella, Enterobacter, Moellerella, Pantoea, Rahnella and Tiedjeia arctica. A novel phylotype of T. arctica is harbored in the intestinal tract of wild salmon, and may correspond to a previously undescribed species.