The potential of hyperspectral images and partial least square regression for predicting total carbon,total nitrogen and their isotope composition in forest litterfall samples

Purpose

The main objective of this study was to examine the potential of using hyperspectral image analysis for prediction of total carbon (TC), total nitrogen (TN) and their isotope composition (δ¹³C and δ¹⁵N) in forest leaf litterfall samples.

Materials and methods

Hyperspectral images were captured from ground litterfall samples of a natural forest in the spectral range of 400–1700 nm. A partial least-square regression model (PLSR) was used to correlate the relative reflectance spectra with TC, TN, δ¹³C and δ¹⁵N in the litterfall samples. The most important wavelengths were selected using β coefficient, and the final models were developed using the most important wavelengths. The models were, then, tested using an external validation set.

Results and discussion

The results showed that the data of TC and δ¹³C could not be fitted to the PLSR model, possibly due to small variations observed in the TC and δ¹³C data. The model, however, was fitted well to TN and δ¹⁵N. The cross-validation R² _cv of the models for TN and δ¹⁵N were 0.74 and 0.67 with the RMSE_cv of 0.53% and 1.07‰, respectively. The external validation R² _ex of the prediction was 0.64 and 0.67, and the RMSE_ex was 0.53% and 1.19 ‰, for TN and δ¹⁵N, respectively. The ratio of performance to deviation (RPD) of the predictions was 1.48 and 1.53, respectively, for TN and δ¹⁵N, showing that the models were reliable for the prediction of TN and δ¹⁵N in new forest leaf litterfall samples.

Conclusions

The PLSR model was not successful in predicting TC and δ¹³C in forest leaf litterfall samples using hyperspectral data. The predictions of TN and δ¹⁵N values in the external litterfall samples were reliable, and PLSR can be used for future prediction.

     

Mapping QTL controlling soybean seed sucrose and oligosaccharides in a single family of soybean nested association mapping (SoyNAM) population

The meal value of Soybean for monogastric animals is determined partly by sucrose, raffinose and stachyose. Of these, sucrose is desirable, while raffinose and stachyose are indigestible, causing flatulence and abdominal discomfort. The objective of this study was to identify quantitative trait loci (QTL) controlling seed sucrose, raffinose, and stachyose in a set of 140 SoyNAM (Nested Association Mapping) recombinant inbred lines (RILs), developed from the cross between lines IA3023 and LD02‐4485. A total of 3,038 SNP markers from the Illumina SoyNAM BeadChip SNP were used to map the QTLs for sucrose and the RFOs, raffinose, and stachyose. Significant genotypic differences (p < .001) among RILs were observed for sucrose, raffinose and stachyose contents across years. A 3038 Illumina SoyNAM BeadChip SNPs identified three QTLs for sucrose, one on chromosome 1, explaining 10% variance and two on chromosome 3 each explaining 22%. Raffinose QTL was detected on chromosome 6, explaining 6% variance. The mapped QTLs were novel and spanned regions harbouring candidate genes with roles in plant growth including seed development.     

Crystallographic structure of the octameric histone core of the nucleosome at a resolution of 3.3 A

The structure of the (H2A-H2B-H3-H4)2 histone octamer has been determined by means of x-ray crystallographic techniques at a resolution of 3.3 angstroms. The octamer is a prolate ellipsoid 110 angstroms long and 65 to 70 angstroms in diameter, and its general shape is that of a rugby ball. The size and shape are radically different from those determined in earlier studies. The most striking feature of the histone octamer is its tripartite organization, that is, a central (H3-H4)2 tetramer flanked by two H2A-H2B dimers. The DNA helix, placed around the octamer in a path suggested by the features on the surface of the protein, appears like a spring holding the H2A-H2B dimers at either end of the (H3-H4)2 tetramer.     

基于SRTM_DEM的泾河流域特征信息提取研究

流域特征信息的提取对于水文地理信息分析、模拟技术和水文模型建立具有重要意义。基于STRM_DEM数据,在ArcGIS9．3环境下,提取泾河流域坡度、坡向等地形特征,以及河网、流域边界和面积等水文要素,并划分子流域。分析表明,当闽值取5000（40．5km^2）时,生成的流域河网能够较好地反映该地区水系。根据河网分级、低级集水区域生成结果和流域地形特征,可划分为32个子流域,为流域分布式水文模型的构建提供了基础地理信息。SRTM_DEM提取泾河和部分支流流域面积误差均较小,说明提取结果与实际非常接近。结果表明,SRTM_DEM数据和ArcGIS9．3提取流域特征信息方便快捷,具有较高的精度和准确性,应用前景广阔。     

Towards sustainable farming systems: Effectiveness and deficiency of the French procedure of sustainable agriculture

There is a widespread consensus about the importance of sustainable agriculture. In France, the Farming Orientation Law of July 1999 has set down a precise procedure for the implementation of sustainable agriculture: the contrat territorial d’exploitation – or territorial farm contract (TFC). This paper aims to analyse the TFC effectiveness. An analysis has been made of the TFCs signed in the Midi-Pyrenees Region in south-western France, using statistical analysis and qualitative surveys of a sample of farms. The results show that the most valuable effects have been mainly economic. Effects regarding social and environmental aspects were very limited. But from the point of view of an integrated approach, indirect effects of TFCs can be observed on social and environmental aspects. These results are explained, on the one hand, by farmers’ motivations guided by economic objectives, and on the other hand, by the dominance of professional farming organisations in the implementation of TFC’s procedure. Given these results, two ways of improving the elaboration procedure for TFCs are proposed. Firstly, technical improvements can be made to the diagnostic assessment of farms, and to the choice of actions addressed by the contract. Secondly, organisational improvements can be applied to TFCs elaboration and implementation process, in order to adopt a participatory approach which would involve all rural stakeholders.     

Potato (Solanum spp.) production using apical cuttings and tuberlets under three contrasting environments of Vietnam

Potato production from rooted apical cuttings or from small tubers (l–20g) produced in high density beds has great potential in Asia. This is particularly important in non-traditional warmer environments. This research was conducted to assess the feasibility of producing many small tubers in high density beds. A second objective compared tubers from beds with transplanted rooted cuttings and traditional seed tubers for growth and yield in the field. Tuberlet production in beds exceeded 2000/m² with a density of 1000 plants/m² under optimal growing conditions while under high temperatures only about 1.25 tuberlets/plant were produced. In field experiments, transplanted cuttings yielded 20 t/ha in the mid and high elevation areas, only slightly less than tuberlets of 5–10g while at the hot site, yields were generally only 8 to 10 t/ha for both materials. Larger healthy seed tubers produced significantly higher yields at the low and high elevation sites. Tuberlets of 1–5g were also able to give yields of 20 t/ha in the mid-elevation site. These results indicate that cuttings and small tuberlets are two ways of growing potatoes which need to be further evaluated for socioeconomic assessment by farmers.     

中国彭州市和越南东安地区蔬菜生产的肥料使用和评价

本文详细阐述了中国和越南4个村蔬菜生产中的肥料施用情况,概述了施用肥料的种类、施用时间和施用数量。评价了影响肥料施用的因素,比较了施肥量和蔬菜从土壤中带出的养分量。在研究区域,农户施用了50多种肥料,施氮量间于0～700kg／hm^2。肥料施用时间因蔬菜种类和地区不同而不同。氮的施用量主要受作物种类影响。大部分中国蔬菜的氮、磷施用量过大,而钾肥施用量不足;相对而言,越南蔬菜的局部养分平衡比中国的情况好一些。因此,局部的养分平衡显示了不同蔬菜种类、不同季节和不周村社的养分投入量和养分输出量有很大区别。     

Evaluation of Alternative Protein Sources to Replace Fish Meal in Practical Diets for Juvenile Tilapia,Oreochromis spp

Two feeding experiments were conducted to evaluate if methionine is limiting in practical grow‐out diets for tilapia, Oreochromis spp. Four diets containing 32% protein and 5% lipid were designed to compare the use of diets high in dehulled solvent‐extracted soybean meal (DSESM) and expeller pressed soybean meal (EPSM) compared with a diet containing 6% fish meal (FM). Tilapia (4.78 ± 0.07 g, mean ± SD) were randomly stocked into twelve 600‐L flow‐through tanks at 20 fish per tank. After 6 wk, there were no notable trends or statistically significant differences (P > 0.05) in final mean weight, survival rate, and feed conversion ratio (FCR) among the treatments. Because results of this study indicated that DSESM could totally replace FM in practical diets for juvenile tilapia, a second batch of diets were formulated using other protein sources. Typical levels of cottonseed meal (CSM), DSESM, and meat and bone meal (MBM) were used to evaluate whether methionine could be limiting. Two basal diet formulations were tested either without or with methionine supplement (0.06/100 g diet). The first diet contained 15% CSM, 27% DSESM, and 10% MBM and the second diet contained 15% CSM and 37% DSESM. These diets contained 28% protein and 5% lipid. Tilapia (3.90 ± 0.05 g) were randomly stocked into twelve 60‐L glass aquaria of a recirculation system at 18 fish per aquarium for 5 wk and then moved to the 600‐L flow‐through tanks for five more weeks. After 10 wk, there were no statistically significant differences (P > 0.05) in final mean weight, survival rate, and FCR among the four treatments. Results of the present study indicated that DSESM and EPSM could totally replace FM’s inclusion rate in commercial diets for juvenile tilapia. Furthermore, methionine did not appear to be limiting in practical diets using typical levels of CSM, DSESM, and MBM as primary protein sources.     

Short-term effects of organo-mineral enriched biochar fertiliser on ginger yield and nutrient cycling

Purpose

Biochar has agronomic potential but currently is too expensive for widespread adoption. New methodologies are emerging to reduce the cost such as enriching biochar with nutrients that match crops and soil requirements. However, the effects of biochar-based fertilisers on plant yield and soil nutrient availability have not been widely examined. This study investigated the effects of a novel organo-mineral biochar fertiliser in comparison to organic and commercial biochar fertiliser on ginger (Zingiber officinale Canton).

Materials and methods

There were four treatments: (1) commercial organic fertiliser (5 t ha^?1), as the control; (2) commercial biochar-based fertiliser (5 t ha^?1); (3) organo-mineral biochar fertiliser at low rate (3 t ha^?1); and (4) organo-mineral biochar fertiliser at high rate (7.5 t ha^?1). A replicated pot trial was established with black dermosol soil and ten replicate pots for each treatment. Ginger was planted and grown for 30 weeks. Plant growth, biomass, foliar nutrients and water extractable soil nutrients including phosphorus (P), potassium (K) and calcium (Ca) were examined.

Results and discussion

High rate organo-mineral biochar fertiliser increased soil P and K availability at week 30 (harvest) after planting, compared to all other treatments and low rate organo-mineral biochar fertiliser performed similarly to the organic control for P and K. High rate organo-mineral biochar fertiliser increased total foliar nutrient content at week 30 in P, K and Ca compared to commercial biochar fertiliser. High rate organo-mineral biochar fertiliser improved the commercial value of ginger (+?36%) due to a shift in the proportion of higher grade rhizomes. Low rate organo-mineral biochar fertiliser plants displayed similar yield, total dry and aboveground biomass to commercial organic fertiliser. Commercial biochar fertiliser had significantly lower biomass measures compared with other treatments as the rate applied had lower nutrient concentrations.

Conclusions

Our results show organo-mineral biochar fertilisers could be substituted for commercial organic fertilisers at low rates to maintain similar yield or applied at high rates to increase commercial value where economically feasible.

     

Antibacterial and antifungal activity of Indonesian ethnomedical plants

Methylene chloride and methanol extracts of 20 Indonesian plants with ethnomedical uses have been assessed for in vitro antibacterial and antifungal properties by disk diffusion method. Extracts of the six plants: Terminalia catappa, Swietenia mahagoni Jacq., Phyllanthus acuminatus, Ipomoea spp., Tylophora asthmatica and Hyptis brevipes demonstrated high activity in this bioassay system. These findings should stimulate the search for novel, natural product such as new antibacterial and antifungal agents.