Molecular and genealogical analysis of grain dormancy in Japanese wheat varieties,with specific focus on MOTHER OF FT AND TFL1 on chromosome 3A

In the wheat (Triticum aestivum L.) cultivar ‘Zenkoujikomugi’, a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression, resulting in strong grain dormancy. We used a DNA marker to detect the ‘Zenkoujikomugi’-type (Zen-type) SNP and examined the genotype of MFT-3A in Japanese wheat varieties, and we found that 169 of 324 varieties carry the Zen-type SNP. In Japanese commercial varieties, the frequency of the Zen-type SNP was remarkably high in the southern part of Japan, but low in the northern part. To examine the relationship between MFT-3A genotype and grain dormancy, we performed a germination assay in three wheat-growing seasons. On average, the varieties carrying the Zen-type SNP showed stronger grain dormancy than the varieties carrying the non-Zen-type SNP. Among commercial cultivars, ‘Iwainodaichi’ (Kyushu), ‘Junreikomugi’ (Kinki-Chugoku-Shikoku), ‘Kinuhime’ (Kanto-Tokai), ‘Nebarigoshi’ (Tohoku-Hokuriku), and ‘Kitamoe’ (Hokkaido) showed the strongest grain dormancy in each geographical group, and all these varieties, except for ‘Kitamoe’, were found to carry the Zen-type SNP. In recent years, the number of varieties carrying the Zen-type SNP has increased in the Tohoku-Hokuriku region, but not in the Hokkaido region.     

Distribution of photoperiod-insensitive allele Ppd-A1a and its effect on heading time in Japanese wheat cultivars

The Ppd-A1 genotype of 240 Japanese wheat cultivars and 40 foreign cultivars was determined using a PCR-based method. Among Japanese cultivars, only 12 cultivars, all of which were Hokkaido winter wheat, carried the Ppd-A1a allele, while this allele was not found in Hokkaido spring wheat cultivars or Tohoku-Kyushu cultivars. Cultivars with a photoperiod-insensitive allele headed 6.9–9.8 days earlier in Kanto and 2.5 days earlier in Hokkaido than photoperiod-sensitive cultivars. The lower effect of photoperiod-insensitive alleles observed in Hokkaido could be due to the longer day-length at the spike formation stage compared with that in Kanto. Pedigree analysis showed that ‘Purple Straw’ and ‘Tohoku 118’ were donors of Ppd-A1a and Ppd-D1a in Hokkaido wheat cultivars, respectively. Wheat cultivars recently developed in Hokkaido carry photoperiod-insensitive alleles at a high frequency. For efficient utilization of Ppd-1 alleles in the Hokkaido wheat-breeding program, the effect of Ppd-1 on growth pattern and grain yield should be investigated. Ppd-A1a may be useful as a unique gene source for fine tuning the heading time in the Tohoku-Kyushu region since the effect of Ppd-A1a on photoperiod insensitivity appears to differ from the effect of Ppd-B1a and Ppd-D1a.     

Soybean meal can partially replace enzyme-treated fish meal in the diet of juvenile Pacific bluefin tuna <Emphasis Type="Italic">Thunnus orientalis</Emphasis>

This study was carried out to investigate whether expensive enzyme-treated fish meal (EFM) can be partially replaced by soybean meal (SM) or enzyme-treated SM (ESM) without compromising the growth of captive-raised Pacific bluefin tuna (PBT) juveniles. Five fish diets were tested: EFM (control) and EFM in which 10 or 20% of the EFM was replaced with either ESM or SM (ESM₁₀, ESM₂₀, SM₁₀ and SM₂₀, respectively). The respective diets were provided to 28-day-old PBT juveniles (mean body weight approx. 0.38 g) stocked randomly in 15-m³ tanks (276 juveniles per tank; two tanks per treatment) for 12 days. The final mean body weight of PBT juveniles on diets EFM, SM₁₀, and SM₂₀ was significantly higher than that of juveniles on diet ESM₂₀. Although daily feeding rate was significantly higher in the ESM and SM groups, feed efficiency (FE) was significantly higher in the EFM group; there was no significant difference between juveniles fed diets EFM and SM₁₀. Protein and phosphorus retention efficiency were significantly lower in the ESM₂₀, and ESM₂₀ and EFM groups, respectively. Phosphorus discharge was significantly lower in the SM groups. The results demonstrate that 10% SM (11% EFM replacement) can be included in EFM without compromising the growth performance of PBT juveniles.     

Fuzzy optimization model for integrated management of total nitrogen loads from distributed point and nonpoint sources in watershed

A fuzzy optimization model is developed to allocate allowable total nitrogen (T-N) loads to distributed nonpoint sources (NPSs) and point sources (PSs) in a watershed for river water quality management using the linear programing technique. The watershed is divided into uniform grid cells on which T-N loads issuing from NPSs such as paddy fields, upland crop fields and cities are controlled. A geographic information system integrated with the digital elevation model facilitates computation of route lengths of surface and subsurface flows from cells to a river running through the watershed. The T-N loads discharged from their sources are assumed to decay, subject to distance-related first-order kinetics. As management goals, maximizations of total allowable NPS loads, total allowable PS loads and total yield of rice are considered from environmental and economic viewpoints. A prime constraint is an effluent limitation standard for the aggregate amount of loads that arrive at the downstream end of the river. The fuzzy sets theory helps appropriately describe vague attitudes of decision-makers (i.e., stakeholders and management authorities) in terms of constraints and conflicting goals. An application of the fuzzy optimization model, developed as an improvement over our last nonfuzzy model, to a real watershed in Shiga prefecture, Japan, demonstrates that the fuzzy model embodies our last model, and is capable of creating management alternatives for T-N load allocation in a more practical and flexible manner.     

A hydro-environmental watershed model improved in canal-aquifer water exchange process

Long-term simulation using the distributed hydro-environmental watershed model is efficacious for assessing irrigation impacts on hydrological cycle in detail and for implementing watershed management successfully. In this article, the previously developed hydro-environmental watershed model (HEWM-1) is improved in the water exchange process caused by surface water-groundwater interaction via drainage canals and/or underdrains. The time-varying stream flow in canals is described by the complete one-dimensional shallow water equations in a newly introduced submodel, the open channel flow submodel. This submodel coordinates with the other submodels: the tank, soil moisture and groundwater flow submodels which are interlinked in a cascade manner. The improved model (HEWM-2) is applied to an agricultural watershed covering an area from an alluvial fan onto a nearly level alluvial plain, to be validated. The simulation by HEWM-2 is informative for identifying whether any drainage canal is gaining or losing water in relation to groundwater level. It could thus provide useful information for conserving a complex network of drainage canals which also functions as a passage for aquatic animals like fishes.     

Distribution of photoperiod-insensitive alleles Ppd-B1a and Ppd-D1a and their effect on heading time in Japanese wheat cultivars

The genotypes of photoperiod response genes Ppd-B1 and Ppd-D1 in Japanese wheat cultivars were determined by a PCR-based method, and heading times were compared among genotypes. Most of the Japanese wheat cultivars, except those from the Hokkaido region, carried the photoperiod-insensitive allele Ppd-D1a, and heading was accelerated 10.3 days compared with the Ppd-D1b genotype. Early cultivars with Ppd-D1a may have been selected to avoid damage from preharvest rain. In the Hokkaido region, Ppd-D1a frequency was lower and heading date was late regardless of Ppd-D1 genotype, suggesting another genetic mechanism for late heading in Hokkaido cultivars. In this study, only 11 cultivars proved to carry Ppd-B1a, and all of them carried another photoperiod-insensitive allele, Ppd-D1a. The Ppd-B1a/Ppd-D1a genotype headed 6.7 days earlier than the Ppd-B1b/Ppd-D1a genotype, indicating a significant effect of Ppd-B1a in the genetic background with Ppd-D1a. Early-maturity breeding in Japan is believed to be accelerated by the introduction of the Ppd-B1a allele into medium-heading cultivars carrying Ppd-D1a. Pedigree analysis showed that Ppd-B1a in three extra-early commercial cultivars was inherited from ‘Shiroboro 21’ by early-heading Chugoku lines bred at the Chugoku Agriculture Experimental Station.     

Optimization model for cropping-plan placement in paddy fields considering agricultural profit and nitrogen load management in Japan

An optimization model for cropping-plan placement on field plots is presented for supporting decision-making on agricultural management by a farming organization. The mixed 0?C1 programming technique is employed to select the next planting crop at each field plot in a holistic manner. Reduction of total nitrogen discharged from field plots to the downstream end of the drainage canals is expressed as an objective function of the model to balance an achievement of economic goal and environmental conservation. Some Japanese governmental policies on regulating rice cropping areas and on promoting production of particular upland field crops can be formulated in the model. A computational example of cropping-plan placement on field plots managed under integrated policies is given by operating the optimization model with various weights associated with the objectives. The procured trade-off curve and corresponding patterns of cropping-plan could be useful in the decision-making by the farming organization.     

Inhibition of flower stalk elongation and abnormal flower development by short-day treatment in a Japanese variety of Chinese chive (Allium tuberosum Rottler ex Sprengel)

Chinese chive is produced year-round in Japan, therefore it is important to demonstrate the relationships of short-day (SD) conditions with flower stalk elongation and flower formation for optimizing the cropping system, e.g. the increase in harvests per year. To clarify the influence of short photoperiod on flower stalk elongation and flower formation in Chinese chive, 8 h SD treatments were applied at different developmental stages of flower stalk elongation and flower formation. When the SD treatment started from vegetative or floral-initiated stages, the earlier the SD treatment started, the fewer flower stalks appeared. Also, the earlier the SD treatment started, the less the flowers bloomed and the more the flower stalk elongation was inhibited at the end of SD treatments. Many involucres did not open and withered with death of florets in SD when the SD treatment started between the umbel or flower bud differentiation and the perianth to stamen-formation stages. Also, all or part of the florets aborted and there were no complete inflorescences in the later SD treatments. We found that, in Chinese chive, the development of flower stalk elongation and flower formation were inhibited with the earlier SD treatment, after vegetative or floral-initiated stages. Furthermore, it is considered that Chinese chive needs long-day (LD) for the flower stalk elongation and inflorescence formation after the initiation of the flower bud. The plant has a qualitative LD requirement with the same photoperiodic requirement for both flower bud initiation and flower development.     

Long-term survival of a dog with Alexander disease

A 1-year- and 11-month-old spayed female toy poodle had showed progressive ataxia and paresis in the hindlimbs since 11 months old. Magnetic resonance imaging revealed high signal intensity on T2-weighted and fluid-attenuated inversion recovery images at the thoracic and lumbar spinal cord. The dog’s neurological condition slowly deteriorated and flaccid tetraparesis was exhibited. At 4 years and 11 months old, the dog died of respiratory failure. On postmortem examination, eosinophilic corkscrew bundles (Rosenthal fibers) were observed mainly in the thoracic and lumbar spinal cord. Histological features were comparable to previously reported cases with Alexander disease. This is a first case report to describe the clinical course and long-term prognosis of a dog with Alexander disease.