Recent advances in molecular marker techniques: Insight into QTL mapping,GWAS and genomic selection in plants

Recent advances in sequencing technology have brought several novel platforms for marker development and subsequent genotyping. The high-throughput and cost effective marker techniques have changed the entire scenario of marker applications. The huge genotypic data obtained with next generation sequencing (NGS) also demands analytical tools, statistical advances, and comprehensive understanding to cope with breeding applications. In the present review, we discussed different available marker techniques, their strengths, and limitations. Emphasis was given on software tools, analytical pipelines, workbenches, and online resources available for marker development. Comparison of SNP genotyping involving complexity reduction techniques like GBS, RRL, RAD, and array-based platforms were presented in a view to describe suitability for specific purposes. We found that genotyping by whole genome re-sequencing has great potential, and could be a routine application in the near future with continuously decreasing cost of sequencing. Microsatellites, still a valuable option for breeders, have also advanced with NGS. Here a catalogue of tools for microsatellite evaluation in short sequence reads was provided. The most common applications of molecular marker like QTL mapping, genome-wide association mapping (GWAS), and genomic selection were highlighted. The present review will be helpful for the effective utilization of available resources and for the planning of crop improvement programs employing molecular marker techniques.     

Mineralisation in kidney and stomach of Beagle dogs

Summary

Histological examination of 753 Beagle dogs showed renal foci of calcification in 27.9% of males and 21.5% of females. In contrast, stomach calcification was observed in 6.2% of males and 5.2% of females examined.

It is suggested that the focal calcification seen in both organs was possibly of dietary origin and may have been related to the phosphate content.     

Vegetative propagation of Aesculus indica through stem cuttings treated with plant growth regulators

Cuttage propagation of Aesculus indica was tested by treatments with different concentrations of indole-3-acetic acid (IAA) @ 2000, 4000 (ppm), indolebutyric acid (IBA) @ 2000, 4000 (ppm) and naphthlcetic acid (NAA) @ 2000, 4000 (ppm) in dry formulation in the Forest Nursery, Faculty of Forestry, SKUAST-K, Shalimar. The cuttings treated with IBA @ 4000 ppm and IBA @ 2000 ppm had a sprouting rate of 75% and 50%, respectively, which was significantly higher than that of control and other treatments. The highest rooting rate (50%) was recorded in the cuttings with the application of IBA @ 4000 ppm. The cuttings treated with IBA @ 2000 ppm had 25% rooting rate. All other treatments along with control (talc powder) failed to induce rooting. It was concluded that IBA @ 4000 ppm was a better-applied concentration for vegetative propagation of A. indica under Kashmir conditions. Biography: Mumtaz Majeed (1980– ), male, post graduate in Faculty of Forestry, Sher-e-Kashmir University of Agricultural Science & Technology, Shalimar, Srinagar - 191 121, J&K, India.     

Livestock feed resources availability,feeding practices,and nutrient balances in high Himalaya (Gurez) valley of Kashmir

Tropical Animal Health and Production - Assessment of the ruminant livestock feed sources availability, existing feeding practices, and nutrient balances was embarked at different zones of Gurez...     

Genetic dissection of grain yield traits in a large collection of spring wheat (Triticum aestivum L.) germplasm

Journal of Crop Science and Biotechnology - Understanding genetic architecture of a crop germplasm is necessary for designing a successful breeding program. Herein, we evaluated a large collection...     

Efficacy of various concentrations of synthetic hormones on the induced breeding of Channa marulius (Sole)

A study was conducted to determine the artificial breeding response, embryonic and larval development of giant snakehead, Channa marulius, with the application of various dosages of stimulatory hormones: Suprefact® (LHRH) agonist and Ovaprim® (GnRH + dopamine inhibitor). First and second hormonal dosages of Suprefact® (diluted) and Ovaprim® (0.3, 0.4, and 0.5 ml for male and 0.8, 0.9, and 1.0 ml for females per kilogram body weight) were used. There were three treatments T₁, T₂, and T₃ and each treatment had three replicates. Male fish were treated with T₁ (0.3), T₂ (0.4), T₃ (0.5) ml kg⁻¹ of body weight while female fish with T₁ (0.8), T₂ (0.9), T₃ (1.0) ml kg⁻¹ of body weight. The results showed that fish stimulated with T₃ (1.0) obtained better fecundity rate (2951.7) followed by T₂ (0.4) (2678.3), while the lowest fecundity (466.7) was recorded in T₁. The numerically higher values of gonado-somatic index (males and females) and fertilization rate appeared in T₂. The highest survival rate (97.1%) was found in T₃ followed by T₂ (97.0%), while the lowest (32.2%) in T₁. In conclusion, the application of Suprefact® and Ovaprim® at 0.4 and 0.5 ml kg⁻¹ body weight for male and 0.9 and 1.0 ml kg⁻¹ for female fish successfully stimulated snakehead fish induced breeding.