Genome-wide association study for spot blotch resistance in Afghan wheat germplasm

Spot blotch (SB), caused by Bipolaris sorokiniana, is a devastating disease of wheat globally, especially in South Asia and South America. Understanding the genetics of resistance to SB is important for developing breeding strategies to improve resistance. A panel of 301 genotypes from Afghanistan was phenotyped over two crop seasons using a mixture of virulent B. sorokiniana isolates and genotyped using DArTSeq to obtain genome-wide markers. Fifty genotypes (16.6%) showed disease scores less than the resistant control. Principal component analysis using the genotypic data clustered the genotypes into five different groups. Among models used for genome-wide association mapping, the multilocus mixed model, and fixed and random model circulating probability unification algorithms were most effective in identifying significant marker-trait associations (MTA). Twenty-five MTAs at p ≤ .001 were identified on chromosomes 1A, 1B, 1D, 2B, 2D, 3A, 3B, 4A, 5A, 5B, 6A, 7A, and 7D, indicating the quantitative nature of resistance to SB. Phenotypic variation explained by these markers ranged from 2.0% to 17.7%, and genomic regions on the chromosomes 1D, 2D, 3A, 3B, 4A, 5A, and 5B coincided with loci identified in previous studies. Three single nucleotide polymorphism (SNP) markers on chromosomes 1B (SNP 1113207) and 5A (SNPs 5411867 and 998276) were significant in both crop seasons as well as in the combined analysis across seasons. Marker 5411867 is close to Vrn-A1, shown to be associated with SB in previous studies. Furthermore, among known SB resistance genes, Sb2 on chromosome 5B was predicted to be significant in this panel.     

Site-Specific Nitrogen Management in Rice Using Remote Sensing and Geostatistics

Proper doses of nitrogenous fertilizer are most important for rice production system because a large part of the nitrogen may be lost if it is not applied judiciously. A study was conducted covering five blocks of Balasore and two blocks of Bhadrak districts. Soil samples were collected randomly, and field visit was conducted during peak vegetative stage of rice. Two approaches have been used in this study for estimating the site-specific nitrogen (N) requirement in the study area. In one approach, geostatisical analysis and kriging was used to develop the soil test–based N recommendation map by which a minimum of 72 kg N ha^?1 and maximum of 94 kg N ha^?1 were recommended. In a second approach, remote sensing was used and N recommendation map was developed using the moderate-resolution imaging spectroradiometer (MODIS) leaf area index (LAI) and normalized difference vegetation index (NDVI) satellite data, and a minimum requirement of 60 kg N ha^?1 and maximum of 120 kg N ha^?1 was estimated through this approach.     

A comprehensive study on occurrence records of African neglected and underutilized weed species,Cleome gynandra L. (cat's whiskers) validating the ecogeographical range expansion in West Bengal,India

Cleome gynandra L., commonly known as cat's whiskers, is an erect, branched, annual herb, belonging to the family Cleomaceae. The species is thought to have originated in tropical Africa and Southeast Asia, and thereafter have spread to other tropical and subtropical countries in the Northern and Southern hemispheres. Cat's whiskers is a highly nutritious vegetable and also possesses numerous medicinal values, yet it is considered as a neglected and underutilized weed species (NUS) in most of the world. In India, C. gynandra is recorded in Assam, Gujarat, Kerala, Maharashtra, Rajasthan, Tamil Nadu, and Uttar Pradesh. There is no earlier report of this species in West Bengal, India. This report is the first record of natural occurrence of C. gynandra in West Bengal, India. The main objective of this report is to provide valid information about the invasion and naturalization of this species in a new geographical area supported with suitable data. Global distribution data of cat's whiskers was retrieved from available web resources and mapped using Quantum GIS software in order to validate the de novo nature of occurrence of this species in this region.     

Preparation and characterizations of polypyrrole on liquid ammonia pre-treated wool fabric

Wool fabric was treated with liquid ammonia at -40 °C for 30 and 60 s prior to the application of polypyrrole (PPy). The polymer was deposited on wool fiber using the chemical oxidation method with 0.02 and 0.05 mol/l (Py) monomer concentration and FeCl₃ as a catalyst. Functional groups of wool samples were analyzed using FT-IR, and surface morphology was investigated using SEM micrographs. Properties such as water absorbency, surface resistivity, abrasion resistance, weight add-on, and air permeability of coated specimens were explored. The FT-IR outcomes revealed the liquid ammonia pre-treatment changed the amount of amide I (NH), cystic acid, cystic monoxide, and dioxide content of the fiber. SEM micrographs revealed the descaling of wool surface after pre-treatment and smooth coating of polymer. Pre-treatment of wool in liquid ammonia improved absorbency of wool fabric with respect to the treatment duration. The surface resistivity of wool fabric decreased with the increase of monomer concentration and pre-treatment duration. The results of abrasion resistance confirmed that the pre-treated fabric exhibited lower loss of polymer after 200 cycles of abrasion. The weight of the fabric was increased and air permeability decreased when the monomer concentration and liquid ammonia pre-treatment duration was increased.     

Effects of water availability and fertilization on nitrogen cycling in a stand of Pinus radiata

Nitrogen cycling was studied for four years (1983–1987) in an N-deficient 10-year-old stand of Pinus radiata growing on a yellow podzolic soil which had a low water-holding capacity. Trees were subjected to combinations of irrigation of N-fertilization resulting in a wide range of N uptake and tree growth. Net mineralization, plant uptake and leaching of soil N was monitored using a sequential coring and in-situ incubation technique. Nitrogen concentrations were measuredd monthly in live needles and litterfall. Average rates of weight loss and release of N from decomposing litter were estimated over a 3-year period using a budgeting approach.

Trees responded only to N (not to P, and there was no N×P interaction), but there was a large positive interaction between N supply and water availability. Response to fertilizer averaged + 24% over a 4-year period, but was zero during a growing-season which contained a 4-month drought. Irrigation alone increased growth by 60%, but in combination with high N availability growth increased 2–3 fold. Annual uptake of N ranged from <10 (irrigated plots in years 2 and 3 after enhanced mineralization during the initial year) to 166 kg ha⁻¹ (during a wet growing season following heavy N fertilization). Although soil mineral-N concentrations were elevated for only about 1 year after fertilization, fertilization enhanced rates of N mineralization throughout the soil N mineralization may have resulted from re-mineralization of the large quantity (147 kg soil N mineralization may have resulted from re-mineralization of the large quantity (147 kg ha⁻¹) of fertilizer N immobilized by the soil during the initial 8 months after fertilization, or the N released from decomposition of fine roots having higher N content. Nitrification was negligible in unfertilized soils, but increased markedly 50–100 days after fertilization and resulted in the leaching of about 60 kg N ha⁻¹ during autumn and winter of the first year after fertilization. Fertilized soils have continued to nitrify readily. Irrigation increased rates of weight loss and N release from decomposing litter.

The rate of N uptake by trees markedly affected the concentrations of N in newly emerging and older needles, and the concentration of N in needlefall. The weighted mean concentration of N in annual needlefall ranged from 0.42% in the irrigated-only plot (most N-stressed) to 0.94% in the heavily fertilized plot during the first year after treatment. These weighted concentrations are a useful index of N uptake from the soil and of growth rate where water supply is not limiting. Except for the initial year after heavy N fertilization, annual uptake of N was equivalent to annual soil N mineralization, and N uptake was positively linearly correlated with annual basal-area increment of trees.     

Cross-protection against Salmonella Typhimurium infection conferred by a live attenuated Salmonella Enteritidis vaccine

In this study, a genetically engineered live attenuated Salmonella Enteritidis (SE) vaccine was evaluated for its ability to protect against Salmonella Typhimurium (ST) infection in chickens. The birds were orally primed with the vaccine on the 1st day of life and given an oral booster at 5 wk of age. Control birds were orally inoculated with phosphate-buffered saline. Both groups of birds were orally challenged with a virulent ST strain at 9 wk of age. Compared with the control chickens, the vaccinated chickens had significantly higher levels of systemic IgG and mucosal IgA against specific ST antigens and a significantly greater lymphoproliferative response to ST antigens. The excretion of ST into the feces was significantly lower in the vaccinated group than in the control group on days 9 and 13 d after challenge. In addition, the vaccinated group had significantly fewer pronounced gross lesions in the liver and spleen and lower bacterial counts in the internal organs than the control group after challenge. These data indicate that genetically engineered live attenuated SE may induce humoral and cellular immune responses against ST antigens and may confer protection against virulent ST challenge.     

A Review of Paclitaxel and Novel Formulations Including Those Suitable for Use in Dogs

Paclitaxel is a commonly used chemotherapeutic agent with a broad spectrum of activity against cancers in humans. In 1992, paclitaxel was approved by the U.S. Food and Drug Administration (FDA) as Taxol^® for use in advanced ovarian cancer. Two years later, it was approved for the treatment of metastatic breast cancer. Paclitaxel was originally isolated from the bark of the Pacific yew tree, Taxus brevifolia in 1971. Taxanes are a family of microtubule inhibitors. As a member of this family, paclitaxel suppresses spindle microtubule dynamics. This activity results in the blockage of the metaphase‐anaphase transitions, and ultimately in the inhibition of mitosis, and induction of apoptosis in a wide spectrum of cancer cells. Additional anticancer activities of paclitaxel have been defined that are independent of these effects on the microtubules and may include the suppression of cell proliferation as well as antiangiogenic effects. Based on its targeting of a fundamental feature of the cancer phenotype, the mitotic complex, it is not surprising that paclitaxel has been found to be active in a wide variety of cancers in humans. This review summarizes the evidence in support of paclitaxel's broad anticancer activity and introduces the rationale for, and the progress in development of novel formulations of paclitaxel that may preferentially target cancers and that are not associated with the risks for hypersensitivity in dogs. Of note, a novel nanoparticle formulation of paclitaxel that substantially limits hypersensitivity was recently given conditional approval by the FDA Center for Veterinary Medicine for use in dogs with resectable and nonresectable squamous cell carcinoma and nonresectable stage III, IV and V mammary carcinoma.