Selection and characterization of wheat genotypes for saline soils prone to water‐logging

Wheat (Tritcum aestivum L.) genotypes were screened and characterized for performance under salt stress and/or water‐logging. In a solution‐culture study, ten wheat genotypes were tested under control, 200 mM–NaCl salt stress and 4‐week water‐logging (nonaerated solution stagnated with 0.1% agar), alone or in combination. Shoot and root growth of the wheat genotypes was reduced by salinity and salinity × water‐logging, which was associated with increased leaf Na⁺ and Cl^– concentrations as well as decreased leaf K⁺ concentration and K⁺ : Na⁺ ratio. The genotypes differed significantly for their growth and leaf ionic composition. The genotypes Aqaab and MH‐97 were selected as salinity×water‐logging‐resistant and sensitive wheat genotypes, respectively, on the basis of their shoot fresh weights in the salinity × water‐logging treatment relative to control. In a soil experiment, the effect of water‐logging was tested for these two genotypes under nonsaline (EC = 2.6 dS m^–1) and saline (EC = 15 dS m^–1) soil conditions. The water‐logging was imposed for a period of 21 d at various growth stages, i.e., tillering, stem elongation, booting, and grain filling alone or in combinations. The maximum reduction in grain yield was observed after water‐logging at stem‐elongation + grain‐filling stages followed by water‐logging at grain‐filling stage, booting stage, and stem‐elongation stage, respectively. Salinity intensified the effect of water‐logging at all the growth stages. It is concluded that the existing genetic variation in wheat for salinity × water‐logging resistance can be successfully explored using relative shoot fresh weight as a selection criterion in nonaerated 0.1% agar–containing nutrient solution and that irrigation in the field should be scheduled to avoid temporary water‐logging at the sensitive stages of wheat growth.     

Growth and physiology of basmati rice under conventional and water-saving production systems

Conventionally flooded rice (CFR) requires enormous water and labor inputs. Water scarcity aspires for cultivation of water-saving rice. Growth response and physiology of basmati rice genotypes under the water-saving production systems has not been reported yet. Studies were conducted for 2 years to compare the growth and physiology of three rice cultivars (Super Basmati, Basmati-2000 and Shaheen Basmati), under high (CFR), medium (alternate wetting and drying [AWD]) and low water input (aerobic rice [AR]) systems. Leaf area index, crop growth rate, leaf area duration and dry matter accumulation were higher for AR followed by AWD and CFR, respectively. Shaheen Basmati had a lower growth and relative water contents than Super Basmati and Basmati-2000, probably due to its shorter stature and shorter life cycle. Photosynthetic rate and stomatal conductance of rice cultivars in the different production were affected only at reproductive stage. Basmati-2000 grown as AR had the highest photosynthetic rate followed by the same cultivar under AWD. The results of this study provide us an idea that basmati cultivars can attain a high growth and development with low water input. This would be helpful to grow rice successfully under water-short rice-growing environments.     

Genotypic analysis of virulence genes and antimicrobial profile of diarrheagenic <Emphasis Type="Italic">Escherichia coli</Emphasis> isolated from diseased lambs in Iran

The aim of the present study was to determine the analysis of virulence genes and antimicrobial profile of diarrheagenic Escherichia coli isolated from diseased lambs. Two hundred ninety E. coli isolates were recovered from 300 rectal swabs of diarrheic lambs and were confirmed by biochemical tests. The pathotype determination was done according to the presence of genes including f5, f41, LTI, STI, bfp, ipaH, stx ₁ , stx ₂ , eae, ehlyA, cnf ₁ , cnf ₂ , cdIII, cdIV, and f17 by PCR method. Sixty-six isolates (23.72%) possessed the STI gene and categorized into entrotoxigenic E. coli (ETEC). Nine isolates (3.1%) and five isolates (1.72%) were positive for the cnf1 and cnf2 genes which categorized into necrotoxic E. coli (NTEC). Hundred and seventeen isolates (40.34%) harbored stx ₁ and/or stx ₂ and classified as Shiga toxin-producing E. coli (STEC). Thirteen isolates (4.48%) were assigned to atypical entropathogenic E. coli (aEPEC) and possessed eae gene. Two isolates (0.68%) were positive for ipaH gene and were assigned to entroinvasive E. coli (EIEC). Statistical analysis showed a specific association between eae gene and STEC pathotype (P?<?0.0001). The most prevalent resistance was observed against lincomycin (96.5%) and the lowest resistance was against kanamycine (56.02%), respectively. The high prevalence of STEC and ETEC indicates that diarrheic lambs represent an important reservoir for humans. ETEC may play an important role for frequent occurrence of diarrhea in lambs observed in this region. Due to high antibiotic resistance, appropriate control should be implemented in veterinary medicine to curb the development of novel resistant isolates.     

Evaluation of haemodynamic changes of uterine arteries using Doppler ultrasonography during different stages of pregnancy in Bos indicus cows

The objectives of the study were to evaluate haemodynamic changes and their relationships among ipsilateral (IPS) and contralateral (CONT) uterine arteries (UA) during different stages of pregnancy in Bos indicus cows. Multiparous pregnant cows (n = 40) having a gestation length 30.47 ± 0.54 (mean ± SD) days were randomly enrolled and subjected to Doppler ultrasonography sequentially at 1st, 2nd, 4th, 6th and 8th months of gestation. Blood flow indices including diameter of UA (mm), blood flow volume (BFVo, ml/min), blood flow velocity (BFVe, cm/s), time-averaged maximum velocity (TAMV, cm/s), pulsatility index (PI) and resistance index (RI) were recorded. Data were analysed with mixed models using the PROC MIXED procedures, and Pearson correlation coefficients were calculated using the PROC CORR statement in SAS. The final statistical models included the fixed effects of side of UA, gestation month and the interaction between side of UA and gestation month. Results revealed that the mean diameter of the UA (12.13 ± 0.22 vs. 10.09 ± 0.22), BFVo (1236.33 ± 0.55 vs. 770.41 ± 0.55), BFVe (17.18 ± 0.42 vs. 15.58 ± 0.42) and TAMV (17.11 ± 0.44 vs. 15.77 ± 0.44) was higher (p < .05) in IPS as compared to CONT side of the UA in cows. However, PI and RI did not differ between IPS and CON arteries of uterus in cows. A very high and positive correlation (r = .89; p < .05) existed between the diameter of UA and BFVo starting from 1st to 8th months of gestation in IPS as well as CONT sides of UA. Moreover, TAMV was highly and positively correlated (r = .91; p < .05) with BFVe throughout the gestation. In conclusion, these haemodynamic changes in the UA could be used as a valuable validity tool to differentiate the compromised pregnancy in Bos indicus cows.     

Incorporation of estradiol benzoate to CIDR protocol improves the reproductive responses in crossbred dairy heifers

The present study was designed to determine the effect of estradiol benzoate (EB) on reproductive response following a controlled internal drug release (CIDR) protocol in crossbred (Sahiwal × Friesian) dairy heifers. In the first trial, a total of 100 crossbred dairy heifers were treated with CIDR protocol for 7 days and injected with the PGF_2α on day 6. After 24 h of CIDR removal, one group (EB?=?50) was injected with estradiol benzoate whereas the other (control?=?50) remained untreated. Estrus intensity and response were recorded visually and ovulation rate was recorded by ultrasonography. All heifers were artificially inseminated at 48 and 60 h following CIDR removal. Heifers were scanned for pregnancy within days 30–40 of artificial insemination (AI). In the second trial, two subgroups of heifers were included to observe the estrus and ovulatory events. The results of the first trial revealed that estrus response was achieved 100% in both the treatment groups. Estrus intensity (2.9?±?0.1 vs. 2.0?±?0.7) and ovulation rate (100 vs. 88%) differed significantly (P?<?0.05) between the EB and control groups. However, a tendency for higher pregnancy per AI was observed (54 vs. 36%; P?=?0.07) in EB than that in control groups. The results of the second trial revealed that a significantly (P?<?0.05) shorter estrus and earlier ovulatory events were observed in EB-treated heifers. It is concluded that the incorporation of estradiol benzoate to the CIDR protocol is helpful to improve the estrus signs and enhance the ovulation and the pregnancy per AI in crossbred dairy heifers.     

Different Eucalyptus Species Show Different Mechanisms of Tolerance to Salinity and Salinity × Hypoxia

ABSTRACT

We studied the effect of sodium chloride (NaCl) salinity and oxygen deficiency stress on growth and leaf ionic composition of three Eucalyptus species [E. tereticornis, E. camaldulensis (Silverton), and E. camaldulensis (Local)]. Species were grown with control (no NaCl) and salinity (150 mol m^?3 NaCl) under hypoxic and non-hypoxic conditions in nutrient solution with five replications following CRD. Species differed significantly in their response to salinity and hypoxia. Absolute shoot dry matter was significantly better in E. camaldulensis (Silverton) in salinity and in E. camaldulensis (Local) in saline hypoxic treatment. E. tereticornis was the most sensitive species to salinity and salinity × hypoxia in the root environment. Sodium (Na⁺) and chloride (Cl^?) concentrations were significantly lower in E. camaldulensis (Local) in non-hypoxic saline treatment compared to the other two species. E. camaldulensis (Silverton) seems to have better tissue compartmentalization, whereas E. camaldulensis (local) seems to have better exclusion of Na⁺ at the root level.     

Major constraints on shisham (Dalbergia sissoo) plantations and pathological debate on dieback disease in Punjab,Pakistan

Today,shisham plantations in Punjab,Pakistan face major constraints,especially dieback disease.This article reviews the multidisciplinary team work by forest and plant pathologists and economists to resolve the confusions in the pathology of dieback disease.It is intended to be of practical use to the foresters and plant pathologists reporting on this issue.     

Control of alternative splicing by the differential binding of U1 small nuclear ribonucleoprotein particle.

Cellular factors controlling alternative splicing of precursor messenger RNA are largely unknown, even though this process plays a central role in specifying the diversity of proteins in the eukaryotic cell. For the identification of such factors, a segment of the rat preprotachykinin gene was used in which differential expression of neuropeptides gamma and K is dependent on alternative splicing of the fourth exon (E4). Sequence variants of the three-exon segment, (E3-E4-E5) were created, resulting in a sensitive assay for factors mediating the splicing switch between E4-skipping and E4-inclusion. A dinucleotide mutation in the 5' splice site of E4 that increase base-pairing of this site to U1 small nuclear RNA resulted in uniform selection of E4, whereas a control mutation that destroyed base-pairing resulted in uniform E4-skipping. Affinity selection of spliceosomes formed on these functionally distinct substrates revealed that the extreme difference in splicing was mediated by differential binding of the U1 small nuclear ribonucleoprotein particle (snRNP) to the 5' splice site of E4. These data show that, apart from its established role in selecting 5' splice sites, U1 snRNP plays a fundamental role in 3' exon selection and provides insight into possible mechanisms of alternative splicing.     

Strain-Specific Behavior of Mycobacterium tuberculosis in Interruption of Autophagy Pathway in Human Alveolar Type II Epithelial A549 Cells

Background:Autophagy induction has been shown to differ in magnitude depending on the mycobacterial species. However, few studies have investigated the specific autophagic capacity of different Mtb strains in ATs. This study aimed to elucidate the host autophagic response to different Mtb strains in ATs responsible for TB in the capital of Iran, Tehran. Methods:A549 cells were infected with three different Mtb clinical isolates (Beijing, NEW1, and CAS1/Delhi) and the reference strain H37Rv. Following RNA extraction, the expression of eight ATG genes, four mycobacterial genes, and three miRNAs was evaluated using quantitative RT-PCR. Results:The results revealed that all four strains influenced the autophagy pathway in various ways at different magnitudes. The Beijing and H37Rv strains could inhibit autophagosome formation, whereas the CAS and NEW1 strains induced autophagosome formation. The expression of genes involved in the fusion of autophagosomes to lysosomes (LAMP1) indicated that all the studied strains impaired the autophagolysosomal fusion; this result is not unexpected as Mtb can block the autophagolysomal fusion. In addition, the Beijing and H37RV strains prevented the formation of autophagic vacuoles, besides mycobacterial targeting of lysosomes and protease activity.Conclusion:This preliminary study improved our understanding of how Mtb manages to overcome the host immune system, such as autophagy, and evaluated the genes used by specific strains during this process. Further studies with a large number of Mtb strains, encompassing the other main Mtb lineages, are inevitable.Key Words: A549 cells, Autophagy, MicroRNA, Mycobacterium tuberculosis     

Regulatory Effect of let-7f Transfection in Non-Small Cell Lung Cancer on its Candidate Target Genes

Background:Let-7f has essential impacts on biological processes; however, its biological and molecular functions in lung cancer pathogenesis have yet been remained unclear. We aimed to investigate the expression level of let-7f and its candidate target genes both in lung cancer tissues and A549 cell line. Methods:Bioinformatics databases were first used to select candidate target genes of let-7f. Then the relative gene and protein expressions of let-7f and its target genes, including HMGA2, ARID3B, SMARCAD1, and FZD3, were measured in lung tissues of Non-Small Cell Lung Cancer (NSCLC) patients and A549 cell line using quantitative real-time PCR and Western blotting. The electroporation method was used to transfect A549 cells with let-7f mimic and microRNA inhibitor. The impact of let-7f transfection on the viability of A549 cells was assessed using MTT assay. The expression data of studied genes were analyzed statistically Results:Results indicated significant downregulated expression level of let-7f-5p (p = 0.0013) and upregulated level of the HMGA2 and FZD3 in NSCLC cases (p < 0.05). In A549 cells, after transfection with let-7f mimic, the expression of both mRNA and protein levels of HMGA2, ARID3B, SMARCAD1, and FZD3 decreased. Also, the overexpression of let-7f significantly inhibited the A549 cell proliferation and viability (p = 0.017). Conclusion:Our findings exhibited the high value of let-7f and HMGA2 as biomarkers for NSCLC. The let-7f, as a major tumor suppressor regulatory factor via direct targeting genes (e.g. HMGA2), inhibits lung cancer cell viability and proliferation and could serve as a marker for the early diagnostic of NSCLC.Key Words: MicroRNAs, Biomarkers, Carcinoma, Non-Small-Cell Lung