Screening of Neutrophil Activating Factors from a Metagenome Library of Sponge-Associated Bacteria

Marine sponge-associated bacteria are known as bio-active compound produce. We have constructed metagenome libraries of the bacteria and developed a metagenomic screening approach. Activity-based screening successfully identified novel genes and novel enzymes; however, the efficiency was only in 1 out of 10⁴ clones. Therefore, in this study, we thought that bioinformatics could help to reduce screening efforts, and combined activity-based screening with database search. Neutrophils play an important role for the immune system to recognize excreted bacterial by-products as chemotactic factors and are recruited to infection sites to kill pathogens via phagocytosis. These excreted by-products are considered critical triggers that engage the immune system to mount a defense against infection, and identifying these factors may guide developments in medicine and diagnostics. We focused on genes encoding amino acid ligase and peptide synthetase and selected from an in-house sponge metagenome database. Cell-free culture medium of each was used in a neutrophil chemiluminescence assay in luminol reaction. The clone showing maximum activity had a genomic sequence expected to produce a molecule like a phospho-N-acetylmuramyl pentapeptide by the metagenome fragment analysis.     

Flavonol Caffeoylglycosides as alpha-Glucosidase Inhibitors from Spiraea cantoniensis Flower

In the screening experiments for rat intestinal alpha-glucosidase inhibitors in 218 plants cultivated in the Japanese temperate region, potent maltase-inhibiting activity was found in the extract of flowers of Spiraea cantoniensis. The enzyme assay guided fractionation of the extract led to the isolation of three flavonol caffeoylglycosides, quercetin 3- O-(6- O-caffeoyl)-beta-galactoside ( 1), kaempferol 3- O-(6- O-caffeoyl)-beta-galactoside ( 2), and kaempferol 3- O-(6- O-caffeoyl)-beta-glucoside ( 3), as rat intestinal maltase inhibitors. This is the first report on the alpha-glucosidase-inhibitory activity of those flavonol caffeoylglycosides. Comparison in the activity of the isolates indicated the importance of caffeoyl substructures in the molecule for the alpha-glucosidase-inhibiting activity. The relatively high contents of the active isolates in the plant suggest that S. cantoniensis could be physiologically useful for treatment of diabetes.     

Spatial analysis of roadside Acacia populations on a road network using the network K-function

Spatial patterning of plant distributions has long been recognised as being important in understanding underlying ecological processes. Ripley’s K-function is a frequently used method for studying the spatial pattern of mapped point data in ecology. However, application of this method to point patterns on road networks is inappropriate, as the K-function assumes an infinite homogenous environment in calculating Euclidean distances. A new technique for analysing the distribution of points on a network has been developed, called the network K-function (for univariate analysis) and network cross K-function (for bivariate analysis). To investigate its applicability for ecological data-sets, this method was applied to point location data for roadside populations of three Acacia species in a fragmented agricultural landscape of south-eastern Australia. Kernel estimations of the observed density of spatial point patterns for each species showed strong spatial heterogeneity. Combined univariate and bivariate network K-function analyses confirmed significant clustering of populations at various scales, and spatial patterns of Acacia decora suggests that roadworks activities may have a stronger controlling influence than environmental determinants on population dynamics. The network K-function method will become a useful statistical tool for the analyses of ecological data along roads, field margins, streams and other networks.This revised version was published online in May 2005 with corrections to the Cover Date.     

Sorption and desorption studies of Cs and Sr in contaminated soil samples around Fukushima Daiichi Nuclear Power Plant

Journal of Soils and Sediments - Huge amounts of radiocesium, radiostrontium, and fission products were released into the atmosphere during the Fukushima Daiichi Nuclear Power Plant (FDNPP)...