Characterisation of caecum and crop microbiota of Indian indigenous chicken targeting multiple hypervariable regions within 16S rRNA gene

1. A comparative analysis of caecum and crop microbiota of chick, grower and adult stages of Indian indigenous chickens was conducted to investigate the role of the microbiota of the gastrointestinal tract, which play an important role in host performance, health and immunity.

2. High-throughput Illumina sequencing was performed for V3, V4 and V4-V6 hypervariable regions of the 16S rRNA gene. M5RNA and M5NR databases under MG-RAST were used for metagenomic datasets annotation.

3. In the crop, Firmicutes (~78%) and Proteobacteria (~16%) were the predominant phyla whereas in the caecum, Firmicutes (~50%), Bacteroidetes (~29%) and Actinobacteria (~10%) were predominant. The Shannon-Wiener diversity index suggested that sample richness and diversity increased as the chicken aged.

4. For the first time, the presence of Lactobacillus species such as L. frumenti, L. antri, L. mucosae in the chicken crop along with Kineococcus radiotolerans, Desulfohalobium retbaense and L. jensenii in the caecum are reported. Many of these bacterial species have been found to be involved in immune response modulation and disease prevention in pigs and humans. The gut microbiome of the indigenous chicken was enriched with microbes having probiotic potential which might be essential for their adaptability.

     

Potential,constraints and applications of in vitro methods in improving grain legumes

Grain legumes, the important constituents of sustainability‐based cropping systems and energy‐limited vegetarian diets have long been the subject of scientific research. Tremendous technological strides were made in the so‐called orphan crops, in terms of both varietal improvement and generation of basic information. Despite recalcitrancy and high genotype dependency, in vitro culture techniques such as organogenesis, in vitro mutagenesis, embryo rescue and in vitro gene transfer have been deployed for improvement of several grain legumes and these played an important role in introgression of desirable genes from related and distant species and creation of additional genetic variability. Stable and reproducible regeneration protocols resulted in the development of genetically modified chickpea, pigeon pea, cowpea, mungbean, etc., while embryo rescue was deployed successfully for recovery of interspecific recombinants, a few of them exploited for the development of commercial cultivars. Nevertheless, doubled haploidy witnessed limited success and protoplast regeneration and in vitro mutagenesis remained of academic interest. The present review focuses on the progress, achievements, constraints and perspectives of using in vitro technology in grain legume improvement.     

Response of the soil macrofauna abundance and community structure to drought stress under agroforestry system in southeastern Qinghai-Tibet Plateau

ABSTRACT

Soil macrofauna is vital for soil functions and soil-mediated processes in all ecosystems. However, environmental perturbations, such as drought, that threaten both the abundance and function of soil macrofauna remain mostly unexplored, particularly in an agroforestry system. We investigated the effects of drought on soil macrofauna abundance and vertical distribution under three different planting systems including two intercropping systems, comprising Chinese prickly ash (Zanthoxylum bungeanum) intercropped with soybean (Glycine max) (Z-G) or bell pepper (Capsicum annuum) (Z-C), and one monoculture system, comprising only Z. bungeanum (Z). Soil samples were collected at depths of 0–10, 10–20, and 20–30 cm, and soil macrofauna and chemical properties were analyzed. Soil dryness negatively affected soil macrofauna in all planting systems. Drought reduced the total macrofauna density, biomass, genera richness, and Pielou’s evenness. Additionally, drought significantly decreased density and biomass of Drawida and Eisenia but had no effect on Carabid beetles. Soil macrofauna density was highest in the Z-G intercropping system and higher at 0–10 cm than at other soil depths. These results indicate that intercropping soybean rather than bell pepper increases the abundance and biomass of soil macrofauna, and drought remarkably impacts the response of soil macrofauna to planting systems.     

Genetic variation in minerals,crude protein and structural carbohydrates of foliage in provenances of young plants ofProsopis cineraria (L.) Druce in India

Prosopis cineraria is an important species for aridzone agroforestry in India. Information on the chemical composition and nutritive value of the leaves of young trees that will be useful in screening the provenances, is lacking. Chemical composition (N, P, K, Ca, Mg, Na), crude protein, and structural carbohydrates (neutral detergent fibre, acid detergent fibre, cellulose, hemicellulose, and lignin) of the foliage of one-year-old plants of 31 provenances ofProsopis cineraria were determined. The seeds were collected from 16°50 N to 29°55 N latitude and 69°49 E to 78°03 E longitude in India, and grown at Hisar (29°10 N latitude, 75°46 E longitude and 215 m altitude). Mineral contents (except N and P), crude protein, and structural carbohydrates varied significantly (p<0.05) between provenances, and the greatest amount of N, P, crude protein, NDF, ADF and lignin contents were found in Hisar provenance. The in vitro dry matter digestibility varied from 18.2% in Gandhinagar provenance to 34.0% in that of Barmer provenance.     

Evaluation and selection of multipurpose tree for improving soil hydro-physical behaviour under hilly eco-system of north east India

Soil hydro-physical behaviour was studied under a 20-year old agroforestry plantation consisting of five multipurpose tree species (Pinus kesiya Royle ex-Gordon, Alnus nepalensis D.Don, Parkia roxburghii G.Don, Michelia oblonga Wall. and Gmelina arboria Roxb.) maintained under normal recommended practices at Indian Council of Agricultural Research (ICAR) Complex, Umiam, Meghalaya, India. The aim was to select tree species, which could act as better bio-ameliorant as well as provides higher economic return in highly degraded soil of northeastern hill region of India. A site without vegetation (no tree) nearby the plantation was also selected as control for comparison. Soil samples for various hydro-physical analysis, were taken from 0–15 and 15–30 cm soil depth at a distance of 1 m from respective tree species during wet and dry season of 2003–2004. No appreciable differences in relative contents of textural separates of sand, silt and clay were observed among various tree covers. Surface cover with constant leaf litter fall and extensive root system increased soil organic carbon, helped in better soil aggregation, improved water transmissivity and infiltrability and in turn, reduced soil erosion in the present study. However, due to variation in quantity of leaf litter fall and root biomass, these parameters differed among tree species. Of the tree species, P. kesiya, M. oblonga and A. nepalensis were found to be rated best for bio-amelioration of soils as these tree covers had more root and shoot biomass and more litter fall compared to other species. However, considering both timber production and improvement in hydro-physical behaviour, M. oblonga was found best among the tested tree species. The study, thus, suggested that inclusion of tree species M. oblonga in agroforestry system is a viable option for natural resource management and could sustain long-term soil productivity in a highly degraded soil of this region as well as for food security of the resource poor people of North East India.     

Subacute toxicity of dietary 3-acetyldeoxynivalenol in mice.

3-Acetyldeoxynivalenol was incorporated into a semisynthetic diet at levels of 2.5, 5, 10 or 20 ppm and fed to mice for up to 48 days. Body weights and feed consumption were determined, and blood samples for hematological evaluation were taken. Selected tissues were examined microscopically and the humoral immune response was assessed using the Jerne plaque assay. 3-Acetyldeoxynivalenol caused a dose-related depressed feed consumption within the first seven days and reduced body weight until day 14 when fed at levels up to 10 ppm. When fed at a level of 20 ppm, an initial depression in body weight gain and a general malaise were followed by a return to normal. At necropsy, no macroscopic or microscopic lesions could be found. The immune response was not significantly affected after seven or 14 days, but at 21 days, a dose-dependent enhanced response was observed. The findings indicate that, after an initial period of reduced feed intake, animals are apparently able to overcome the toxic effects of 3-acetyldeoxynivalenol.     

Importance of sepals in fruit and seed development in linseed (Linum usitatissimum L.)

Summary The green sepals in linseed (Linum usitatissimum L.) persist till almost the time of fruit ripening. Since the plant retains very few leaves and the fruits are better exposed to receive sunlight, the green sepals may be important in fruit and seed development. Influence of the removal of 0, 1, 3 and 5 sepals on the day of anthesis, 7, 15 and 25 days after anthesis on fruit and seed development was examined. Excision of all the fine sepals on the day of anthesis stopped fruit and seed development in the varieties M 10 and NP (RR) 45 but in Mukta the reduction was about 55%. Removal of three sepals also decreased fruit growth in Mukta and NP (RR) 45. The effect of removal of sepals was more pronounced on the number of seeds per fruit than on seed weight. Sepals fixed ¹⁴CO₂ and translocated ¹⁴C to seeds. However, the ¹⁴CO₂ fixation was maximum at early stages of fruit development, whereas a higher percentage of the fixed ¹⁴C was translocated at later stages of growth. It is suggested that the sepal size in linseed could be a useful selection criterion.     

Marker‐assisted backcross breeding to combine multiple rust resistance in wheat

A widely grown but rust susceptible Indian wheat variety HD2932 was improved for multiple rust resistance by marker‐assisted transfer of genes Lr19, Sr26 and Yr10. Foreground and background selection processes were practised to transfer targeted genes with the recovery of the genome of HD2932. The near‐isogenic lines (NILs) of HD2932 carrying Lr19, Sr26 and Yr10 were individually produced from two backcrosses with recurrent parent HD2932. Marker‐assisted background selection of NILs with 94.38–98.46% of the HD2932 genome facilitated rapid recovery of NILs carrying Lr19, Sr26 and Yr10. In the BC₂F₂ generation, NILs were intercrossed and two gene combinations of Lr19+Yr10, Sr26 + Yr10 and Lr19+Sr26 were produced. A total of 16 progeny of two gene combinations of homozygous NILs of HD2932 have been produced, which are under seed increase for facilitating the replacement of the susceptible HD2932 with three of the sixteen improved backcross lines with resistance to multiple rusts.