Movement and habitat use of the freshwater catfish (Tandanus tandanus) in a remnant floodplain wetland

Knowledge of the movement and habitat use of fishes is important in identifying and understanding the causes of population declines and predicting how populations are likely to respond to management interventions. In this study, radiotelemetry was used to examine the spring and summer movement and habitat use patterns of the freshwater catfish (Tandanus tandanus) in a remnant wetland to inform the development of recovery actions for this threatened species. Twenty‐one adult fish were tagged and released within Tahbilk Lagoon, Victoria, Australia, in September 2009. Fish were located every 1–2 weeks between September 2009 and February 2010, a period which coincides with the spawning period for the species. Eleven of the fish were also tracked every 2 h for 68 consecutive hours in December 2009 to examine diel movements. The study revealed that freshwater catfish make extensive use of cover (e.g. wood and macrophytes) and typically have limited ranges (median total linear range and 90% linear range 599 and 173 m respectively), although they occasionally moved more extensively (up to 1.5 km) between floodplain and riverine habitats. Fish moved over much greater areas at night compared with during the day. There was also evidence of sex‐specific variation in movement, with a trend for greater movement of female fish at night compared with males. The results of the study suggest that strategies that protect macrophyte and wood habitats and improve connectivity between riverine and floodplain habitats are likely to be important in maintaining and restoring remnant populations of this species.     

Grass silage versus maize silage effects on retail packaged beef quality

The effects of three preslaughter diets on heifer beef quality were investigated. Heifers (n = 45) were divided into three groups and fed for ad libitum consumption either maize silage, grass silage, or a 50:50 mixture of maize silage and grass silage. Meat quality was determined by measuring color, lipid oxidation, alpha-tocopherol levels, and fatty acid composition. Beef from the maize silage group had poorest color stability (P < 0.05), whereas beef from the grass silage diet had best (P < 0.05) color stability. The visual panel least preferred the maize silage group after 2 or more days of display, and lipid oxidation was significantly (P < 0.001) higher in this group compared to the 50:50 maize:grass silage and grass silage groups. There was a significant (P < 0.001) difference in the alpha-tocopherol levels detected in the meat from the three dietary groups. Alpha-tocopherol levels increased in the order: maize silage < 50:50 maize:grass silage < grass silage, at levels of 2.08, 2.95, and 3.84 microg/g meat, respectively. Fatty acid analysis indicated 18:3 was significantly (P < 0.001) lower in the maize silage-fed group than in the maize:grass silage and grass silage groups. However, 18:3 was significantly (P < 0.001) higher in the grass silage group than in the other two groups. There were no significant differences in all other fatty acids among the three dietary groups. It was concluded that beef from grass silage-fed animals had better overall quality in terms of color, lipid oxidation, and alpha-tocopherol levels than beef from maize silage fed animals.     

Use of a population model to assess the impact of longline fishing on wandering albatross Diomedea exulans populations

An age-structured model of a wandering albatross Diomedea exulans population is developed to stimulate population trends over time, using demographic parameters from the population at Possession Island, Crozets, during 1968–1986. The simulation results portray a population decreasing at a rate of 2·29% per year, which concurs with global population trends. Sensitivity analyses of model parameters indicate that both adult and juvenile mortality are contributing to the decrease. Wandering albatross mortality is presumed to have increased as a result of deaths caused by longline fishing vessels; such deaths are likely to be relatively more frequent among young, naive birds. The model is used to investigate the potential impacts of new longline fisheries such as that for Patagonian toothfish Dissostichus eleginoides in Antarctica. Assuming longline fishing operations affect juveniles more than adults, there is a time lag of 5–10 years before further decreases in population numbers are reflected in the breeding population. Also, because wandering albatrosses are long-lived, population growth rates take approximately 30–50 years to stabilize after a perturbation. Consequently, caution must be exercised when interpreting population trends; short-term (<20 year) estimates may not provide good indications of long-term trends.     

Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine

In mammalian cells, repair of DNA double-strand breaks (DSBs) by nonhomologous end-joining (NHEJ) is critical for genome stability. Although the end-bridging and ligation steps of NHEJ have been reconstituted in vitro, little is known about the end-processing reactions that occur before ligation. Recently, functionally homologous end-bridging and ligation activities have been identified in prokarya. Consistent with its homology to polymerases and nucleases, we demonstrate that DNA ligase D from Mycobacterium tuberculosis (Mt-Lig) possesses a unique variety of nucleotidyl transferase activities, including gap-filling polymerase, terminal transferase, and primase, and is also a 3' to 5' exonuclease. These enzyme activities allow the Mt-Ku and Mt-Lig proteins to join incompatible DSB ends in vitro, as well as to reconstitute NHEJ in vivo in yeast. These results demonstrate that prokaryotic Ku and ligase form a bona fide NHEJ system that encodes all the recognition, processing, and ligation activities required for DSB repair.     

Ecological speciation in South Atlantic island finches

Examples of sympatric speciation in nature are rare and hotly debated. We describe the parallel speciation of finches on two small islands in the Tristan da Cunha archipelago in the South Atlantic Ocean. Nesospiza buntings are a classic example of a simple adaptive radiation, with two species on each island: an abundant small-billed dietary generalist and a scarce large-billed specialist. Their morphological diversity closely matches the available spectrum of seed sizes, and genetic evidence suggests that they evolved independently on each island. Speciation is complete on the smaller island, where there is a single habitat with strongly bimodal seed size abundance, but is incomplete on the larger island, where a greater diversity of habitats has resulted in three lineages. Our study suggests that the buntings have undergone parallel ecological speciation.     

Identification of a DNA nonhomologous end-joining complex in bacteria

In eukaryotic cells, double-strand breaks (DSBs) in DNA are generally repaired by the pathway of homologous recombination or by DNA nonhomologous end joining (NHEJ). Both pathways have been highly conserved throughout eukaryotic evolution, but no equivalent NHEJ system has been identified in prokaryotes. The NHEJ pathway requires a DNA end-binding component called Ku. We have identified bacterial Ku homologs and show that these proteins retain the biochemical characteristics of the eukaryotic Ku heterodimer. Furthermore, we show that bacterial Ku specifically recruits DNA ligase to DNA ends and stimulates DNA ligation. Loss of these proteins leads to hypersensitivity to ionizing radiation in Bacillus subtilis. These data provide evidence that many bacteria possess a DNA DSB repair apparatus that shares many features with the NHEJ system of eukarya and suggest that this DNA repair pathway arose before the prokaryotic and eukaryotic lineages diverged.     

Beef authentication and retrospective dietary verification using stable isotope ratio analysis of bovine muscle and tail hair

Stable isotope ratio analysis (SIRA) was used as an analytical tool to verify the preslaughter diet of beef cattle. Muscle and tail hair samples were collected from animals fed either pasture (P), a barley-based concentrate (C), silage followed by pasture (SiP), or silage followed by pasture with concentrate (SiPC) for 1 year (n = 25 animals per treatment). The (13)C/(12)C, (15)N/(14)N, (2)H/(1)H, and (34)S/(32)S isotope ratios in muscle clearly reflected those of the diets consumed by the animals. By applying a stepwise canonical discriminant analysis, a good discrimination of bovine meat according to dietary regimen was obtained. On the basis of the classification success rate, the (13)C/(12)C and (34)S/(32)S ratios in muscle were the best indicators for authentication of beef from animals consuming the different diets. Analysis of (13)C/(12)C and (15)N/(14)N in tail hair sections provided an archival record of changes to the diet of the cattle for periods of over 1 year preslaughter.     

Finishing cattle at pasture at 30 months of age or indoors at 25 months of age: Effects on selected carcass and meat quality characteristics

To examine the effect of a modification of a typically Irish dairy calf-to-beef production system, Charolais × Friesian steers were offered a finishing ration of grass silage ad libitum and 5.6 kg concentrates daily for 174 days prior to slaughter at 25 months of age or grass silage ad libitum for 174 days, followed by pasture for 167 days and slaughter at 30 months of age. Finishing at pasture increased carcass weight (376 vs. 342 kg) but did not affect intra-muscular lipid concentration (28 vs. 24 g/kg). Finishing at pasture decreased Longissimus thoracis et lumborum lightness (35.6 vs. 36.9) and increased shear force of muscle at 2 (8.54 vs 4.32) and 7 days (5.21 vs 3.64 kg) post-mortem but not at 14 days post-mortem (4.45 vs. 3.42 kg). Finishing at pasture did not affect the sensory characteristics of tenderness, juiciness, firmness or chewiness and tended (P < 0.1) to decrease texture and acceptability. It is concluded that modification of this beef production system as described, had minor effects on beef quality which are unlikely to be of commercial significance.     

Correlates of extinction risk and hunting pressure in gamebirds (Galliformes)

The 284 species of Galliformes are a highly threatened group of birds subject to direct exploitation for food, sport and cultural practices. The impact of hunting is often assumed to contribute to the high percentage of species (26.4%) listed as threatened with extinction in the IUCN Red List. We take a macroecological approach to examine the anthropogenic and ecological correlates of extinction risk and hunting pressure using linear and stepwise regression. Independent contrasts are analysed, as well as raw species data, to control for the potential confounding influence of phylogenetic trends. Extinction risk is found to be predicted both by the ecological factors considered (e.g., latitudinal range, body mass, elevational range, habitat use) and secondarily by human factors (e.g., human population density, total calorie intake, composition of diet). Hunting pressure itself is also predicted well for the threatened species by several of the anthropogenic and ecological variables. The study demonstrates that human variables can be used successfully to predict extinction risk, and represent an improvement upon methods which examine ecological variables alone. Furthermore, we show that individual threats can be explored using similar techniques, providing a more detailed insight into the processes leading to extinction. As applied to the Galliformes, both approaches provide evidence supporting the hypothesis that hunting pressure has contributed to the high proportion of threatened species in this group, and thus reinforce the case for urgent measures to reduce the impacts of direct exploitation upon these birds.