Discrimination of lithogenic and anthropogenic influences on topsoil magnetic susceptibility in Central Europe

The study was performed on the area of the three countries involved in the MAGPROX project (Poland, Czech Rep., Germany). In the first stage the basic map of magnetic susceptibility based on the field topsoil measurement was compiled with an average grid density of 10 km. In the second stage of the study, vertical distribution of magnetic susceptibility of ca. 600 topsoil cores (0.3 m long), collected over central Europe, was examined with respect to the anthropogenic or lithogenic influence on magnetic susceptibility of the soil surface, with the focus being on the interpretation of the areas showing high surface susceptibility values. The maximum values were mostly observed in depths of 3–4 cm. In general seven different types of susceptibility profiles from forest areas and one typical for urban soil are presented. They are a result of a combination of natural (litho- and pedogenic) and anthropogenic contributions. Our results prove that soil profiles, dominated by anthropogenic influence due to atmospherically deposited dust, are characterized by magnetically enhanced humuous layer, corresponding to layer with the highest concentration of heavy metals. Moreover, forest soils show in these cases higher magnetic susceptibility than soils in open areas (grassland, meadows or arable soils).     

Heterogeneity of 5S RNA in fungal ribosomes

Neurospora crassa has at least seven types of 5S RNA genes (alpha, beta, gamma, epsilon, delta, zeta, and eta) with different coding regions. A high resolution gel electrophoresis system was developed to separate minor 5S RNA's from the major 5S RNA (alpha). A study of several Neurospora crassa strains, four other species in the genus Neurospora, members of two closely related genera, and three distantly related genera demonstrated that 5S RNA heterogeneity is common among fungi. In addition, different 5S RNA's are present in Neurospora ribosomes. The finding that fungal ribosomes are structurally heterogeneous suggests that ribosomes may be functionally heterogeneous as well.     

Repeat-induced G-C to A-T mutations in Neurospora

In the Neurospora genome duplicate sequences are detected and altered in the sexual phase. Both copies of duplicate genes are inactivated at high frequency, whether or not they are linked. Restriction sites change, and affected sequences typically become heavily methylated. To characterize the alterations of the DNA, duplicated sequences were isolated before and after one or more sexual cycles. DNA sequencing and heteroduplex analyses demonstrated that the process (termed RIP) produces exclusively G-C to A-T mutations. Changes occur principally at sites where adenine is 3' of the changed cytosine. A sequence duplicated at a distant site in the genome lost approximately 10 percent of its G-C pairs in one passage through a cross. A closely linked duplication of the same sequence that was passed twice through a cross lost about half of its G-C pairs. The results suggest a mechanism for the RIP process.     

An engineering approach to fingered vadose pollutant transport

Results of many independent experimental findings related to fingered preferential flow are combined into a concise, conservative engineering methodology for predicting pollutant transport through fingered flow paths. Preferential flow can occur in all textures of soil, with fingering occurring in less structured coarse soils, giving over to macropore flow in finer-textured soil regimes. A simple example comparing groundwater loading of naphthalene using plug flow and fingered flow assumptions illustrates that fingered flow can increase contaminant loading to groundwater aquifers by over two orders of magnitude at sites with coarse vadose zone materials.     

A portable signal causing faithful DNA methylation de novo in Neurospora crassa

Methylation of cytosine residues in eukaryotic DNA is common, but poorly understood. Typically several percent of the cytosines are methylated; however, it is unclear what governs which sequences eventually become modified. Neurospora crassa DNA containing the "zeta-eta" (zeta-eta) region, which is a region of unusually heavy methylation, was tested for its ability to direct DNA methylation de novo. DNA stripped of its methylation by propagation in Escherichia coli was reintroduced into Neurospora crassa by transformation. The zeta-eta region reproducibly became "properly" methylated whether inserted at its native chromosomal position or at ectopic sites. Adjacent Neurospora and bacterial sequences in the transforming DNA rarely became methylated. A model is presented that accounts for position-independent faithful methylation as observed in the zeta-eta region, as well as position-dependent methylation, as occasionally observed, especially with sequences not native to Neurospora.