A deep-level region-based visual representation architecture for detecting strawberry flowers in an outdoor field

Precision Agriculture - An accurate and robust strawberry flower representation and detection scheme is a key step to enable the reliable forecasting of fruit yield for use in precision...     

Experimental Neospora Caninum Infection in Pregnant Dairy Heifers Raises Concentrations of Pregnancy‐Associated Glycoproteins 1 and 2 in Foetal Fluids

Plasma concentrations of PAG‐1 are used for pregnancy diagnosis and as a marker of placental/foetal well‐being, while those of PAG‐2 may be an indicator of abortion risk in Neospora caninum‐infected cows. Studies have shown that N. caninum infection modifies PAG‐1 and PAG‐2 patterns in maternal blood plasma. However, no prior work has examined the effects of N. caninum infection on concentrations of PAGs in foetal fluids. In this study, PAG‐1, PAG‐2 and pH levels were determined in the amniotic and allantoic fluids of foetuses collected at 152 days of gestation from control uninfected dams and from dams experimentally infected with N. caninum on Day 110 of gestation. Foetal fluids from infected foetuses had significantly higher PAG‐2 concentrations (p = 0.026) and pH values (p = 0.02) than fluids from non‐infected foetuses. In infected foetuses, significantly higher concentrations of PAG‐1 (p < 0.001) and PAG‐2 (p < 0.001) were detected in fluid samples showing antibodies against N. caninum than those without antibodies. Moreover, pH values were significantly higher (p = 0.011) in foetal fluid samples with antibodies than in samples from non‐infected foetuses. In conclusion, this is the first report on the effect of N. caninum infection on PAG levels in foetal fluids. Our results indicate that following the experimental infection of dams with N. caninum on Day 110 of gestation, foetal fluids collected from the infected foetuses of these dams featured higher PAG‐1 and PAG‐2 levels and pH values than fluids from non‐infected controls, provided that the samples tested showed the presence of antibodies. The clinical implications of these findings are that following infection with N. caninum, most cows will experience some level of placental damage and that this injury correlates with foetal fluid PAG levels and pH.     

Aspartic Proteinase Members Secreted by the Ruminant Placenta: Specificity of Three Radioimmunoassay Systems for the Measurement of Pregnancy-associated Glycoproteins

Pregnancy‐associated glycoproteins (PAGs) isolated from the placenta of various ruminant species are enzymatically inactive members of the aspartic proteinase family. The measurement of these proteins in the maternal blood can be a good indicator of the presence of a live embryo. As certain aspartic proteinases are present in biological fluids in physiological and pathological conditions at various concentrations, it was necessary to determine the specificity of three radioimmunoassay (RIA) systems currently used for the detection of PAG molecules. Commercially available members of the aspartic proteinase family like pepsinogen, pepsin, chymosin, rennet, cathepsin D and renin were tested in a wide concentration range (10 ng/ml – 1 mg/ml). Pepsinogen cross‐reacted in RIA 1, RIA 2 and RIA 3 over 1 mg/ml, 50 μg/ml and 500 μg/ml concentrations, respectively. In the presence of pepsin, cross‐reaction was observed in RIA 1, RIA 2 and RIA 3 over 1 mg/ml, 500 μg/ml and 1 mg/ml concentrations, respectively. Chymosin and rennet could cross‐react in RIA 2 and RIA 3, while renin and cathepsin D did not decrease the binding of the tracer to antisera more, than that of the minimal detection limit. As the plasma/serum concentrations of the examined aspartic proteinases reported in the literature were outside the concentration range where cross‐reaction was observed, it can be concluded that these RIA systems were specific for the detection of PAGs in biological fluids.     

Determinants of yield in a non-timber forest product: Copaifera oleoresin in Amazonian extractive reserves

Developing sustainable extractive industries in otherwise intact tropical forest regions requires a sound understanding of the production potential of key resource populations. The oleoresin extracted from Copaifera trees is an economically important non-timber forest product harvested throughout the lowland Amazon basin. We studied oleoresin extraction from four species of Copaifera trees with known harvest histories within two contiguous extractive reserves in western Brazilian Amazonia. We conducted a large-scale experimental harvest of 179 previously unharvested Copaifera trees, in both seasonally flooded (várzea) and adjacent unflooded (terra firme) forests. The likelihood of trees yielding any oleoresin was principally determined by their species identity: C. multijuga was the only species to regularly yield oleoresin (70% of trees). Yield volumes varied both amongst species and forest types: C. multijuga (restricted to terra firme forest) had the highest mean yield of 505 ml, whilst C. guyanensis produced higher volumes of oleoresin in várzea (139 ml) than terra firme (15 ml) forest. Intraspecific differences were driven mainly by tree size. To assess extraction sustainability, we reharvested a sample of C. multijuga trees and compared the oleoresin production of 24 conspecific trees that had been initially harvested one year previously with that of 17 trees initially harvested three years previously. Reharvested trees produced just 35% of the oleoresin volume compared to that when originally drilled, but this response was not affected by the time interval between consecutive harvests. We demonstrate that, within a population of Copaifera, both morphological and environmental factors restrict total productivity; consideration of these factors should inform sustainable management practises. We additionally raise methodological considerations that may improve the comparability of studies.     

Protein and Energy Metabolism of European Seabass (<Emphasis Type="Italic">Dicentrarchus labrax</Emphasis>) Juveniles and Estimation of Maintenance Requirements

The present work aimed to study metabolic utilization of energy and protein by juvenile European seabass reared at 25 °C and to estimate maintenance requirements, based on indirect calorimetry and nitrogen excretion measurements. Duplicate groups of fish (IBW = 22 g) were fed a practical diet, for 28 days, at ration levels of 0, 0.25, 0.5, 1 and 1.5% of body weight. At the end of this period, oxygen consumption and ammonia nitrogen excretion were measured in fed and unfed fish. Weight gain linearly increased with ration level. Feed efficiency significantly increased with nitrogen intake up to 0.68 g N/kg/day. Nitrogen retention (% N intake) was positive at all feeding levels, being maximum at 0.5% BW and then decreased with increasing ration levels. There was negative energy balance at the lowest ration level and significantly increased at higher ration levels. Daily oxygen consumption (g/kg body mass) and ammonia excretion (mg N–NH₄/kg body mass) significantly increased with ration level. Heat production and heat increment of feeding (kJ/kg/day) remained low at low ration levels and significantly increased as ration level increased from 0.5 to 1.5% BW. Below maintenance, protein energy represented 34% of total energy expenditure and significantly increased to 49–56% above maintenance. Based on indirect calorimetry and ammonia excretion data, maintenance energy and protein requirements were estimated to be 56.8 kJ DE/kg/day and 1.15 g DP/kg/day, respectively. The efficiencies of energy and protein utilization were estimated to be 0.83 and 0.66, respectively.     

Interaction of contaminated sediment from a salt marsh with estuarine water: evaluation by leaching and ecotoxicity assays and salts from leachate evaporation

Purpose

Wastes from a former Portuguese steel plant were deposited between 1961 and 2001 on the riverbank of a tributary of the Tagus River creating a landfill connected to the river, posing a potential contamination risk to the Tagus estuary ecosystem. This study aims to assess the transfer of chemical elements from contaminated sediments to the estuarine water from cycles of sediment leaching so as to evaluate the ecotoxicity of the leachates, and to analyze the solid phases crystallized from those leachates.

Materials and methods

Landfill sediment and estuarine water samples were collected during low tide. Sediment samples were analyzed for pH, electric conductivity (EC), C_org, NPK, and iron oxides. Leaching assays (four replicates) were done using estuarine water (200 cm³/replicate) and 1.5 kg of sediment per reactor. Each reactor was submitted to four leaching processes (0, 28, 49, and 77 days). The sediment was kept moist between leaching processes. Sediment (total (acid digestion) and available fraction (diluted organic acid extraction-Rhizo)) elemental concentrations were determined by inductively coupled plasma–instrumental neutron activation analysis (ICP/INAA). Leachates, and estuarine and sediment pore waters were analyzed for metals/metalloids by ICP/mass spectrometry (MS) and carbonates/sulfate/chloride by standard methodologies. Ecotoxicity assays were performed in leachates and estuarine and pore waters using Artemia franciscana and Brachionus plicatillis. Aliquots of the leachates were evaporated to complete dryness (23–25 °C) and crystals analyzed by X-ray powder diffraction (XRD).

Results and discussion

Sediment with pH?=?8 and high EC and C_org was contaminated with As, Cd, Cr, Cu, Pb, and Zn. The element concentrations in the available fraction of the sediment were low compared to the sediment total concentrations (<1 % for Rhizo extraction). The concentrations of potentially hazardous elements in the estuarine water were relatively low, except for Cd. Concentrations of hazardous elements in the leachates were very low. Calcium, K, Mg, Na, and chloride concentrations were high but did not vary significantly among the four leaching experiments. Total concentrations of carbonate were much higher in leachates than in estuarine water. Both estuarine water and leachates showed negligible toxicity. Crystals identified in the solids obtained from the leachates by evaporation were halite, anhydrite, epsomite, dolomite, and polyhalite.

Conclusions

The sediment showed the capacity to retain the majority of the potentially hazardous chemical elements. Remobilization of chemical elements from sediment by leaching was essentially negligible. The variation of total concentrations of Ca, carbonate, and sulfate in leachates indicates that the sediment contained reactive sulfides. Due to its composition, the sediment seems to be a dynamic system of pollution control, which should not be disturbed.

     

Convergence of developmental mutants into a single tomato model system: 'Micro-Tom' as an effective toolkit for plant development research

Background

The tomato (Solanum lycopersicum L.) plant is both an economically important food crop and an ideal dicot model to investigate various physiological phenomena not possible in Arabidopsis thaliana. Due to the great diversity of tomato cultivars used by the research community, it is often difficult to reliably compare phenotypes. The lack of tomato developmental mutants in a single genetic background prevents the stacking of mutations to facilitate analysis of double and multiple mutants, often required for elucidating developmental pathways.

Results

We took advantage of the small size and rapid life cycle of the tomato cultivar Micro-Tom (MT) to create near-isogenic lines (NILs) by introgressing a suite of hormonal and photomorphogenetic mutations (altered sensitivity or endogenous levels of auxin, ethylene, abscisic acid, gibberellin, brassinosteroid, and light response) into this genetic background. To demonstrate the usefulness of this collection, we compared developmental traits between the produced NILs. All expected mutant phenotypes were expressed in the NILs. We also created NILs harboring the wild type alleles for dwarf, self-pruning and uniform fruit, which are mutations characteristic of MT. This amplified both the applications of the mutant collection presented here and of MT as a genetic model system.

Conclusions

The community resource presented here is a useful toolkit for plant research, particularly for future studies in plant development, which will require the simultaneous observation of the effect of various hormones, signaling pathways and crosstalk.