Studies on soil fumigation—III: Effects on enzyme activities,bacterial numbers and extractable ninhydrin reactive compounds

Fumigation of a field soil with chloropicrin and methyl bromide, either singly or in combination, differentially decreased soil enzyme activities and viable bacterial numbers and increased the amounts of ninhydrin reactive compounds extractable with acidified Tris buffer. Chloropicrin treatment was more effective than methyl bromide.The rates of hydrolysis of both an amide and a peptide derivative were decreased by chloropicrin treatment and remained relatively low despite changes in activities over 325 days. By contrast, caseinase activity initially was decreased by both chloropicrin and methyl bromide fumigation, but activities of the fumigated soils recovered to exceed those of untreated soils. Thereafter, caseinase activities of fumigated and untreated soils exhibited relatively large fluctuations, which were partly associated with seasonal drying of the soils in the field.Chloropicrin but not methyl bromide fumigation markedly depressed the viable bacterial populations, which subsequently increased to be above those of the untreated soils. There was no consistent relationship between the release of ninhydrin reactive compounds following fumigation and changes in bacterial numbers or changes in enzyme activity. Autolytic reactions are probably important in the early stages of amino-nitrogen release in fumigated soils. Net gains in caseinase activity may be partly due to the production de novo of extracellular proteases by microorganisms or to the release of intracellular proteases from killed cells.     

Changes in enzymic activity and distribution of acid-soluble,amino acid-nitrogen in soil during nitrogen immobilization and mineralization

During a period of immobilization of nitrate-¹⁵N and mineralization of organic N in a sandy-loam, changes were recorded in: (a) the concentration of an added carbon source, glucose-¹⁴C: (b) evolution of ¹⁴CO₂: (c) bacterial populations; (d) distribution and concentration of newly-synthesized, acid-soluble, amino acid-¹⁵N; and (e) distribution and activities of several oxidative and hydrolytic enzyme systems.Added glucose-¹⁴C was rapidly metabolized by the soil microflora. After 1.5 day's incubation, when only 3.6 per cent of the added glucose was present, 68 per cent of the ¹⁴C remained in the soil-microbial system. During this period there was a marked increase in viable bacterial numbers and an almost complete immobilization of nitrate-¹⁵N. On continued incubation, microbial metabolites were oxidized at decreasing rates, the more rapid phase corresponding to a period of net decline in the viable bacterial population.Soil was fractionated by a relatively mild procedure into components containing: (a) extractable proteins; (b) extractable amino acids and peptides; (c) particulate material containing microbial cells, cell debris and material bound to larger soil particles; and (d) microbial metabolites mainly bound to soil colloids. Although the total, acid-soluble, amino acid-¹⁵N remained relatively constant for about 50 days, there were marked changes in their concentration in different fractions, especially in the extracts and in the fraction containing fine colloidal material. However, the relatively large decline in labelled, acid-soluble, amino acid-¹⁵N occurred during the active phase of oxidation of microbial metabolites when little net mineralization of labelled compounds occurred.Increases in enzymic activities generally coincided with increased viable bacterial populations although there were some exceptions, notably casein and benzoyl arginine amide-hydrolysing enzymes. The stabilities of the newly-formed enzymes varied markedly. The greatest relative changes in activity occurred with the casein-hydrolysing enzymes. Their activity reached a maximal value after the main flush of bacterial growth, was short-lived and was to a large extent extractable. The formation and disappearance of this extracellular proteolytic activity coincided approximately with that of a secondary peak of extractable, newly-synthesized, protein-¹⁵N. In general however, changes in enzymic activity could not be identified with changes of protein-¹⁵N concentrations of the different fractions.     

Experimental infection of normal and immunosuppressed pigs with Pseudomonas pseudomallei

A single dose of 5 x 10(8) bacilli of Pseudomonas pseudomallei by intratracheal injection resulted in acute (21 cases) or chronic (19 cases) melioidosis in 40 of 48 pigs. Fifteen (10 acute and 5 chronic) had been immunosuppressed by cyclophosphamide before inoculation. The major clinical signs were initial fever, marked neutrophilia and, in the acute cases, respiratory distress. There were no signs of the nasal and ocular discharge, paresis or diarrhoea seen in acute cases in south-east Asia. The cyclophosphamide treatment caused a significant decrease in the neutrophil count by 7 d after inoculation in all 15 immunosuppressed pigs, and all were culture positive at necropsy. Eight of the 33 non-treated pigs were culture negative at necropsy. Pigs overcoming the initial phase of infection had more abscess-like nodules that were bacteriologically sterile at necropsy than the pigs with acute cases of melioidosis. P. pseudomallei was isolated predominantly from the spleen, lungs and the injection site. Although only one strain was used in this study, it is likely that Australian strains of P. pseudomallei are not as virulent as the south-east Asian isolates.     

Development of computational models for the purpose of conducting individual livestock and premises traceback investigations utilizing National Animal Identification System-compliant data

Many of the efforts surrounding the development of the National Animal Identification System have encompassed the identification of livestock production and handling premises as well as individuals or herds of animals, whereas little effort has been directed toward the ultimate goal of animal traceback within 48 h. A mock data set representative of the Colorado cattle population was created for modeling of cattle traceability. Using this data set, algorithms were developed to complete rapid and accurate traceback and traceforward of animals or premises or both. On July 19, 2005, the Colorado Department of Public Health and Environment, in conjunction with the Colorado Department of Agriculture, conducted a test exercise pertaining to homeland security. The exercise team randomly identified animal number 926,583 (of the 2 million total animals) as a potentially infected animal of interest and requested a traceback of this animal. Traceback was accomplished in 215 s, and 540 primary coresident animals were identified. However, due to animal movements, the number of coresidents (animals exposed, directly or indirectly, to the animal of interest) expanded with coresidency level (level 1 = direct contact; level 2 = direct contact with an animal that had direct contact with the animal of interest; level 3 = direct contact with an animal that had contact with an animal that had direct contact with the animal of interest, etc.) to more than 1.2 million coresidents at level 4, and more than 90% of all animals identified as a coresident at some level. In addition to the coresidency results, the premises containing the coresidents were identified and sorted by the number of coresidents. Because of animal movement, all 19,391 premises included in the data set had coresidents at some level. This exercise demonstrated the capability of the developed algorithms to complete rapid traceback and the complexity of the resulting animal traceback output.     

SOCRATES—A simple model for predicting long-term changes in soil organic carbon in terrestrial ecosystems

The maintenance of soil organic carbon (SOC) in terrestrial ecosystems is critical for long-term productivity. Simulation models of SOC dynamics are valuable tools in predicting the impacts of climate on carbon storage and developing management strategies for the mitigation of greenhouse gas emissions, however, their utility is generally reduced due to need for specific data. The SOCRATES model is a simple process based representation of soil SOC dynamics in terrestrial ecosystems, which requires minimal data inputs and specifically designed to examine the impact of land use and land use change on soil carbon storage. SOCRATES was successful in predicting SOC change at eighteen long-term crop, pasture and forestry trials from North America, Europe and Australasia. These trials ranged from 8 to 86 years in duration, over a wide range of climates and soil types with annual changes in SOC ranging from −3.0 to 4.2%.     

Growth and nitrogen fixation by Medicago littoralis in pot experiments: Effect of plant density and competition from Lolium multiflorum

The legume Medicago littoralis cv. Harbinger, was grown either alone (1–4 plants per pot) or with Lolium multiflorum (ryegrass) at a total of 4 plants per pot, using two soils of contrasting N status. An ¹⁵N dilution technique was used to distinguish the amounts of plant N due to N₂ fixation and to N uptake from soil. Medic outyielded (dry weight and total plant N) ryegrass in a soil which released low amounts of inorganic N (Roseworthy) but ryegrass outyielded medic in a soil of higher N availability (Avon).For both soils, all combinations of medic and ryegrass plants utilized 70–73% of the inorganic N released on incubation. Competition from ryegrass invariably reduced yields of dry matter, total N, and fixed N of the medic plants, especially in the Avon soil. For both soils, the percentage reduction in the amounts of fixed N resulting from competition from ryegrass was directly proportional to the percentage increase of plant dry matter due to ryegrass. Medic plants grown in Roseworthy soil contained much higher proportions of N due to N₂-fixation than did medic plants grown in Avon soil. The amounts of plant N, fixed N and plant dry weight increased with increasing numbers of medic plants, when grown alone in Roseworthy soil, but not in the Avon soil containing more than two plants per pot. Nevertheless, irrespective of the soil used, medic numbers per pot, or competition from ryegrass, the amounts of fixed N correlated well with total N and with dry matter yields of medic plants. The proportions of fixed N to total N varied consistently in each of the medic plant parts (roots < = leaves < stems < pods).     

Tracking the long-term decline and recovery of an isolated population

Effects of small population size and reduced genetic variation on the viability of wild animal populations remain controversial. During a 35-year study of a remnant population of greater prairie chickens, population size decreased from 2000 individuals in 1962 to fewer than 50 by 1994. Concurrently, both fitness, as measured by fertility and hatching rates of eggs, and genetic diversity declined significantly. Conservation measures initiated in 1992 with translocations of birds from large, genetically diverse populations restored egg viability. Thus, sufficient genetic resources appear to be critical for maintaining populations of greater prairie chickens.