Soil amendments and seed priming influence nutrients uptake,soil properties,yield and yield components of wheat (Triticum aestivum L.) in alkali soils

The effects of soil amendments [i.e., control, gypsum, farmyard manure (FYM), and gypsum?+?FYM] and seed priming (i.e., unprimed, seed soaked in water for 10?hr prior to sowing, and seed soaked in 0.4% gypsum solution for 10?hr prior to sowing) were assessed on growth and yield of wheat (Triticum aestivum L.) crop in alkali soil in northwestern Pakistan. A split plot design was used, keeping priming methods in main plots and soil amendments in sub-plots. The results showed that the effects of soil amendments and seed priming on grain yield, straw yield, harvest index and number of spikes were significant but their interactive effect was non-significant. The highest crop yields and yield index were obtained with gypsum?+?FYM amendments, and seed priming with gypsum solution. The effect on seed emergence, plant height and number of grains per spike was, however, not significant. Grain yield increased by 104% in gypsum?+?FYM treatment over control and by 16.8% with seed primed in water, followed by 8.5% with priming in gypsum solution, as compared to non-priming. The weight of 1000 grains was significantly increased by 35% in gypsum?+?FYM treatment and by 15.8% in gypsum priming. The phosphorus (P) and potassium (K) content increased with soil amendments. Soil pH and gypsum requirement reduced significantly with soil amendments. The blend of gypsum and FYM has improved the properties of salt-affected soil and enhanced fertility for optimum production of wheat in addition to the beneficial effect of seed priming in gypsum solution on crop yield. Using these amendments could be ameliorative in removing the adverse effect of the salt-affected soils, rendering the soil a good medium for plant growth.     

Genome-wide association analysis for stripe rust resistance in spring wheat(Triticum aestivum L.) germplasm

Stripe rust is a continuous threat to wheat crop all over the world. It causes considerable yield losses in wheat crop every year. Continuous deployment of adult plant resistance(APR) genes in newly developing wheat cultivars is the most judicious strategy to combat this disease. Herein, we dissected the genetics underpinning stripe rust resistance in Pakistani wheat germplasm. An association panel of 94 spring wheat genotypes was phenotyped for two years to score the infestation of stripe rust on each accession and was scanned with 203 polymorphic SSRs. Based on D' measure, linkage disequilibrium(LD) exhibited between loci distant up to 45 c M. Marker-trait associations(MTAs) were determined using mixed linear model(MLM). Total 31 quantitative trait loci(QTLs) were observed on all 21 wheat chromosomes. Twelve QTLs were newly discovered as well as 19 QTLs and 35 previously reported Yr genes were validated in Pakistani wheat germplasm. The major QTLs were QYr.uaf.2 AL and QYr.uaf.3 BS(PVE, 11.9%). Dissection of genes from the newly observed QTLs can provide new APR genes to improve genetic resources for APR resistance in wheat crop.     

Nutrient digestibility studies in Heteropneustes fossilis (Bloch), Clarias batrachus (Linnaeus) and C. gariepinus (Burchell)

The apparent digestibility coefficient (ADC %) for protein in catfishes, Clarias batrachus (Linnaeus) (16–18 cm; 45–50 g), C. gariepinus (Burchell) (21–22 cm; 60–65 g) and Heteropneustes fossilis (Bloch) (10–12 cm; 10–15 g) was estimated for nine feedstuffs of plant and animal origin. Fat digestibility was tested for C. batrachus and C. gariepinus, wherein the influence of feeding frequency on protein digestibility was also examined. The digestibility trials were conducted with triplicate groups of 25 fish each in 70‐L polyvinyl indoor flow‐through (1–1.5 L min^?1) circular tanks (water volume=55 L). Fish were fed to satiation daily, at 08:00 and 18:00 hours, and faecal matter was collected through slow siphoning. For studying the effect of feeding frequency, fish were fed the experimental diets at 08:00, 11:00, 14:00 and 17:00 hours. The protein digestibility of the feedstuffs varied significantly within each test species. However, the protein digestibility values for most of the ingredients tested were comparable between the three catfish species. The most efficient utilization of protein in these fishes was noted for soybean meal followed by lab‐prepared fishmeal. The lowest protein digestibility was recorded for rice bran. Similarly, the utilization of fat from the feedstuffs was also significantly different within each of the two species, C. batrachus and C. gariepinus. Fat digestibility of feed ingredients was similar between the two species. With respect to the fat, soybean meal, lab‐prepared fishmeal, full‐fat soybean meal and dried fish were more efficiently utilized, while the lowest fat digestibility was obtained for rice bran. A marked decline in protein utilization was observed in the two species where the feeding frequency was increased from two to four times a day.     

Effect of dietary oxidized oil and vitamin E on growth performance,lipid peroxidation and fatty acid profile of Labeo rohita fingerlings

A 3 × 3 factorial experiment was conducted on Labeo rohita fingerlings to evaluate the effect of dietary oxidized oil and vitamin E. Nine experimental diets were made, based on three degrees of oil oxidation (fresh oil, low oil oxidation and high oil oxidation), and each level of oxidation was further supplemented with three levels of vitamin E (0, 100 and 1,000 mg/kg). Weight gain% and specific growth rate (SGR) of fish fed fresh fish oil and low oil oxidation level were significantly higher than highly oxidized oil. Moreover, vitamin E supplemented fish also showed better growth performance. Oil oxidation caused a significant reduction in the concentrations of α‐tocopherol and increase in TBARS level and antioxidant enzyme activities in fish liver and muscles. However, increasing the dietary vitamin E abrogated these effects. Dietary vitamin E supplementation improved the fatty acid, more specifically polyunsaturated fatty acids profile of oxidized oil fed fish. In conclusion, dietary oxidized fish oil increased the oxidative stress condition of fish but supplementation of high dose of vitamin E prevented lipid oxidation, improved growth performance and fatty acid profile of L. rohita.     

Growth, reproductive performance, muscle and egg composition in grass carp, Ctenopharyngodon idella (Valenciennes), fed hydrilla or formulated diets with varying protein levels

Growth, reproductive performance, muscle and egg composition were investigated in grass carp, Ctenopharyngodon idella (Valenciennnes), fed hydrilla or formulated diets with varying protein levels. Five experimental diets, with varying levels (20%, 25%, 30%, 35% and 40%) of crude protein (CP), were used. One of the fish groups was fed hydrilla. Fish (44.1±0.3 cm; 913±9 g) were stocked (20 tank^?1) in outdoor concrete tanks (20 × 10 × 1.5 m) in duplicate, and fed to satiation, twice daily, at 09:00 and 17:00 hours for the experimental duration of 360 days. High (P<0.05) weight gain was recorded in fish fed 30% and 35% CP diets. However, values for gonadosomatic index (GSI), egg diameter, relative fecundity (eggs kg^?1 body weight), fertilizability and hatchability (%) were comparable (P>0.05) in fish at ≥25% of dietary protein intake. Hydrilla‐fed fish exhibited lower (P<0.05) values for the measured parameters. Crude protein content in muscle increased with dietary protein level. Highest (P<0.05) muscle protein was obtained in fish fed 35% CP diet. Muscle fat was comparable (P>0.05) among fish receiving formulated diets. Ash content was not significantly (P>0.05) different among fish of different dietary groups. Moisture content in fish fed formulated diets, with the exception of 20% CP diet, did not vary significantly (P>0.05). Eggs of fish fed formulated diets contained higher CP and fat contents than those of hydrilla‐fed fish. High (P<0.05) moisture content was noted in the eggs of hydrilla‐fed fish. Ctenopharyngodon idella fed formulated diet, with a minimum of 25% CP, showed better reproductive performance than those fed hydrilla.     

Human-specific gain of function in a developmental enhancer

Changes in gene regulation are thought to have contributed to the evolution of human development. However, in vivo evidence for uniquely human developmental regulatory function has remained elusive. In transgenic mice, a conserved noncoding sequence (HACNS1) that evolved extremely rapidly in humans acted as an enhancer of gene expression that has gained a strong limb expression domain relative to the orthologous elements from chimpanzee and rhesus macaque. This gain of function was consistent across two developmental stages in the mouse and included the presumptive anterior wrist and proximal thumb. In vivo analyses with synthetic enhancers, in which human-specific substitutions were introduced into the chimpanzee enhancer sequence or reverted in the human enhancer to the ancestral state, indicated that 13 substitutions clustered in an 81-base pair module otherwise highly constrained among terrestrial vertebrates were sufficient to confer the human-specific limb expression domain.     

Gas-phase Diffusive Tracer Test for the In-Situ Measurement of Tortuosity in the Vadose Zone

Robust measurements of porous-medium tortuosity are one of the many components needed for accurate characterization and prediction of fluid flow and contaminant transport in the subsurface. A gas-phase diffusive tracer-test method is evaluated for the in-situ measurement of tortuosity in the vadose zone. This technique presents an alternative to employing widely-used correlations to estimate tortuosity. A small-scale field study was conducted using a single well and a non-reactive gas-phase tracer (sulfur hexafluoride; SF₆). Gas samples were collected from the injection point periodically after tracer injection into the soil matrix. An effective radius of influence of 50 cm was determined for the tests. An analytical solution was calibrated to the measured temporal concentration distribution, producing a fitted value for tortuosity. The value obtained from the tracer tests was compared to values estimated with several widely-used correlations. The value obtained from the tracer tests was generally larger than the values estimated with the correlations, which spanned a relatively wide range. The tracer-test method provides a means by which to determine in-situ measurements of tortuosity, allowing for better characterization of contaminant transport in the vadose zone.     

Genetic and Phenotypic Analysis of Soybean mosaic virus Resistance in PI 88788 Soybean

ABSTRACT Resistance to Soybean mosaic virus (SMV) was identified in PI 88788 soybean, a germ plasm accession from China that is used widely as a source of resistance to soybean cyst nematode. Strains SMV-G1 through -G7 infected the inoculated leaves of PI 88788 but were not detected in upper, noninoculated trifoliolate leaves. Inheritance of resistance was determined by inoculating progenies of crosses of PI 88788 with susceptible cvs. Essex and Lee 68 with SMV strains G1 and G7. Allelomorphic relationships with known genes for resistance to SMV were tested in crosses with the resistant genotypes PI 96983, L29, and V94-5152, possessing Rsv1, Rsv3, and Rsv4 genes, respectively. Data analyses showed that resistance in PI 88788 to SMV-G1 is controlled by a single, partially dominant gene; however, to SMV-G7, the same gene was completely dominant. The PI 88788 gene was independent of the Rsv1 and Rsv3 loci, but allelic to Rsv4 in V94-5152. Expression of the Rsv4 gene in PI 88788 resulted in a reduced number of infection sites and restricted short- and long-distance movement of virus, rather than hypersensitivity. A unique late susceptible phenotype was strongly associated with heterozygosity. This gene has potential value for use in gene pyramiding to achieve resistance to several SMV strains, as well as for rate-reducing resistance.