A genetic linkage map in southern‐by‐spring oat identifies multiple quantitative trait loci for adaptation and rust resistance

We developed 178 recombinant inbred lines from a southern‐by‐spring oat population designated as “TxH.” These lines were genotyped to generate a high‐quality linkage map that resolved 6,902 markers into 21 linkage groups that matched closely with the latest hexaploid oat consensus map. Three major quantitative trait loci (QTLs) affecting heading date were found in locations that are consistent with known QTLs and candidate genes, and two other QTLs affecting heading date were found in novel locations. Five QTLs affecting plant height were found. Both sets of QTLs are responsible for transgressive segregation observed for these two traits. Four QTLs affecting resistance to crown rust, caused by the pathogen Puccinia coronata f. sp. avenae, were identified. Two of these QTLs are consistent with known clusters of rust resistance genes, while two may represent new locations of novel rust resistance genes. A complete set of SNP sequences suitable for generating markers for molecular selection is provided.     

Cold tolerance during juvenile development in sorghum: a comparative analysis by genomewide association and linkage mapping

Improved cold tolerance during the juvenile phase is a major breeding goal to develop new sorghum cultivars suitable as an alternative energy crop in temperate regions. The objectives of this study were to identify marker‐trait associations for cold tolerance in a sorghum diversity panel fingerprinted with 2620 single nucleotide polymorphism (SNP) markers and to detect quantitative trait loci (QTL) in two F_2:3 populations. Traits of interest were dry matter growth rate (DMGR), leaf appearance rate (LAR), chlorophyll content (SPAD) and chlorophyll fluorescence (F_v′/F_m′ and Ф_PSII) in relation to temperature. The association panel comprised 194 genotypes, while the F_2:3 populations consisted of 80 and 92 genotypes. All populations were tested under controlled conditions in a minimum of four temperature regimes ranging from 9.4°C to 20.8°C. QTL were identified for means across environments and regression parameters describing temperature effects. Several marker‐trait associations for mean (m) DMGR, base temperature (T_b) of SPAD and Ф_PSII and temperature effect on LAR were validated by QTL detected in population 1 or 2. Promising QTL regions were found on chromosomes SBI‐01, SBI‐02, SBI‐03, SBI‐04, SBI‐06 and SBI‐09, among them genomic regions where candidate genes involved in the C‐repeat binding pathway or encoding cold‐shock proteins are located.     

Status of bovine tuberculosis and its zoonotic implications in Borana zone,Southern Ethiopia

A cross-sectional study was carried out from April 2015 to June 2016 to estimate the status of bovine tuberculosis (BTB), assessment of community’s current knowledge, and zoonotic importance on this disease in Borana zone, southern Ethiopia. In this study, comparative intradermal tuberculin (CIDT) test, structured questionnaires, and retrospective data were used, while the result indicated 3.8% prevalence at individual animal level with 5.6% (31/554) of doubtful reactors. Among related risk factors included, old animals were significantly infected by BTB than young one (χ ²?=?32.005, P?=?0.001). Parity number again showed significant difference (χ ²?=?29.163, P?=?0.001) where animals with many parity were more reactive to conducted test than few parity numbers. Animals born in the breeding center managed under semi-intensive production system were more infected (χ ²?=?10.795, P?=?0.029) than those brought from outside of the center. Questionnaire survey in this study indicated that out of 130 interviewed respondents, only 30% pastoralists knew what BTB mean; whereas the level of individual knowledge from interviewed showed about 72.3% of respondents had poor understanding of BTB and only about 11.5% of them knew its zoonotic importance. Meat eating habit of communities in the area were culturally inhabited to eat cooked meat and only 12.3% (16/130) of respondents gave response on habit of eating both raw and cooked meat. Milk drinking habit of pastoralist in the area showed about 79.2% drunk raw milk and the rest 20.8% used both raw and boiled milk. A retrospective data from Yabello Hospital indicated that current prevalence of human TB as 38.79% and showing the disease was highly increasing from year to year in the study area. This implies a great importance of human tuberculosis and its future concern in Borana zone. From this, there should be detail awareness of communities on BTB, its zoonotic importance, and the need of further investigation to develop control and prevention strategies according to the pastoral settings.     

Genetic structure and differentiation among oregano [<Emphasis Type="Italic">Origanum vulgare</Emphasis> subsp. <Emphasis Type="Italic">glandulosum</Emphasis> (Desf.) Ietswaart] provenances from North Africa: bioinformatic approaches cause systematic bias

Thirteen simple sequence repeat (SSR) markers developed from expressed sequence tags (ESTs) of essential oil glands of Origanum vulgare were previously evaluated. These EST-SSR loci were analyzed to study the genetic diversity and differentiation of Origanum vulgare subsp. glandulosum, an endemic species of Tunisia. The study was performed on five natural populations from the Maghreb regions (North Africa) from northern Tunisia (Sejnane, Krib, Bargou, Zaghouan and Nefza). Two other subspecies of O. vulgare were used as out-group. These are O. vulgare subsp. hirtum (from USA) and O. vulgare subsp. vulgare (from Italy). A total of 60 alleles were detected in the seven populations studied. The number of alleles per locus ranged from 2 to 9. This analysis revealed that the unbiased expected heterozygosity (0.327) is higher than the observed heterozygosity (0.242), reflecting a deficit in heterozygosity in the total population. Only the Sejnane population has an excess of heterozygosity. The differentiation between Tunisian populations is highly significant and indicates the presence of a structure between these populations. However, the indexes of genetic differentiation (FST) values are low and vary between 0.048 and 0.115 which indicate the presence of a weak structure. The value of the FST between Nefza and Krib is not significant, reflecting the absence of genetic structure between them. The value of gene flow between these two populations is the most important (27.34), showing a substantial exchange of genes or genomic regions between them. The migration of genes is less important among the other Tunisian populations. Genetic structuring according to the geographical origin of Tunisian populations is low but still exists, which allows concluding the presence of a single complex gene pool.     

Prevalence of and risk factors for Salmonella in water offered to weaned dairy calves in California,USA

Water from troughs used by weaned dairy calves was sampled on California, USA dairies to determine the prevalence and associated risk factors for Salmonella contamination. Salmonella were found on 4 of 48 dairies (4/82 water samples) in fall 1998 and on 8 of the same 37 dairies (8/83 water samples) in summer, 1999. Serotypes isolated from the water were Salmonella meleagridis and Salmonella typhimurium. Primary risk factors associated with the increased prevalence of Salmonella in water offered to weaned dairy calves were a continuous water tank-filling method compared to a valve (an "on-demand" procedure) and a water pH>8.     

Seroprevalence of contagious caprine pleuropneumonia in Kefta Humera,Alamata (Tigray) and Aba-‘ala (Afar), Northern Ethiopia

A cross sectional study was conducted to determine the sero-prevalence of contagious caprine pleuroneumonia in three districts of Tigray and Afar regions of Ethiopia namely; Kefta Humera, Alamata and Aba-‘alla. Proportions and chi-square test statistics were used to analyze the data. From a total of 863 goats and 137 sheep tested, 282 (32.68%) and 25 (18.25%) were positive for antibodies of Mycoplasma capricolum subsp. capripneumoniae respectively using complement fixation test (CFT). The seroprevalence of CCPP in goats among the three districts was statistically significant (x² = 76.00, p < 0.001). In this study there was no statistical significant variation in the seroprevalence of CCPP in both sexes (x² = 3.619, p = 0.0571) and age (x² = 0.990, p = 0.095) groups. The finding of high seroprevalence of CCPP in sheep (18.25%) could indicate that sheep are potential carriers of Mccp.     

Comparison of extractants for available sludge-borne metals: A residual study

To study the availability of sludge-borne Zn, Cu, Cd, Ni and Pb over time, a field study was conducted. Anaerobically digested sewage sludge (dried on sandbeds) from Huntsville and Chicago were applied to a Decatur silty clay loam soil (clayey, kaolinitic, thermic, Rhodic Paleudult), pH 6.2, for 5 consecutive yr. The sludges were applied at rates of 0, 20 (annual application for 5 yr) and 100 mt ha^?1 (single application). Corn (Zea mays L.) and sudangrass (Sorghum sudanenses) were grown on the sludge-treated plots as test crops in 1987. Plant tissue samples were collected at different growth stages. Soil samples collected from the sludge-treated plots were extracted for Zn, Cu, Cd, Ni and Pb by 0.1 M HCI, DTPA, Mehlich 1 and Mehlich 3 extractants. Statistically, Mehlich 1, Mehlich 3, DTPA and 0.1M HCI extractants all gave highly significant correlations with the plant accumulation of Zn, Cu, Ni and Cd, with DTPA giving the highest at any growth stage for both corn and sudangrass, but they gave poor correlations for Pb. Zinc removed by four extractants was more highly correlated with Zn accumulation by corn (r=0.72^** to 0.93^** p=0.01) and sudangrass (r=0.50^** to 0.96^**, p=0.01) than other metals. Based on higher significant linear correlation coefficients (r), DTPA would be the extractant of choice for both crops; however the advantage to using the Mehlich 3 extractant is that, with a shorter shaking time of 5 min (compared to 2 hr for DTPA), it may be better suited for routine analysis of large numbers of soil samples.