Genetic variability for resistance to sorghum downy mildew (Peronosclerospora sorghi) and Rajasthan downy mildew (P. heteropogoni) in the tropical/sub-tropical Asian maize germplasm

Downy mildews cause considerable damage to maize (Zea mays L.) worldwide, particularly in the tropical Asia. We have evaluated a set of 42 tropical/sub-tropical maize inbred lines developed in different countries in Asia (India, Thailand and Philippines), and Mexico, for analysing the genetic variability for resistance to sorghum downy mildew [Peronosclerospora sorghi; SDM] and Rajasthan downy mildew [P. heteropogoni; RDM]. Experiments were carried out in replicated trials under artificial infection in field conditions against SDM and RDM at Mandya in Karnataka, India, and Udaipur in Rajasthan, India, respectively, during 1999 and 2000. The study resulted in identification of five inbred lines offering consistent and strong resistance to both SDM and RDM, while several inbred lines revealed resistance only to RDM. It was also revealed that the SDM-resistant inbreds are invariably resistant to RDM, while the RDM-resistant inbreds might show differential responses to the SDM. The maize inbred lines identified in this study with broad-spectrum resistance to downy mildews could be potentially useful for basic and applied research work on downy mildews in tropical Asia. This revised version was published online in August 2006 with corrections to the Cover Date.     

Cryptic species composition and genetic diversity within Bemisia tabaci complex in soybean in India revealed by mtCOI DNA sequence

Bemisia tabaci is a cryptic species complex, causing significant loss on many agriculturally important crops worldwide. Knowledge on species composition and diversity within B. tabaci complex is critical for evolving sustainable pest management strategies. Here we investigate the whitefly species complex in soybean in major soybean growing states of India. The mitochondrial cytochrome oxidase gene subunit-1(mt COI) based phylogenetic relationships established using Bayesian methods indicated the existence of three cryptic species namely AsiaⅠ, AsiaⅡ1, and AsiaⅡ7. All the haplotypes detected in the study could be assigned to these three cryptic species following the species demarcation criteria of 3.5% divergence threshold. Of these, AsiaⅡ1 was found to be predominant with wide spread distribution across the surveyed regions from cool temperate zones to hot and humid tropical plains. On the contrary, cryptic species AsiaⅡ7 showed localized distribution. The AsiaⅡ1 exhibited the highest haplotype diversity and AsiaⅠ showed high level of nucleotide diversity. There was a significantly high genetic differentiation among these three cryptic species. The MEAM 1, a dreadful invasive species was not detected in the specimens tested in the current study. The diversity and distribution of three cryptic species is discussed in the light of current knowledge on distribution of whitefly species in India and yellow mosaic disease observed during sampling survey.     

Multivariate analysis and genetic diversity for morphometric and root textural quality traits in ashwagandha (Withania somnifera Dunal)

Ashwagandha (Withania somnifera) is an important medicinal plant and its dried roots are used in traditional systems of medicine. The market price of roots is determined by physical (textural) quality. Brittle roots with high starch and low fiber are considered to be superior because of ease in grinding. Genetic diversity studies based on root textural parameters have not been done so far. So the present study was designed to assess genetic diversity for morphometric traits and root textural quality parameters among two morphologically distinct groups: Poshita and Nagore. The PCA separated the morphometric and root texture variables distinctly into two different principal components: PC-1 and PC-2 respectively, indicating that both are negatively associated. All the morphotypes in Poshita group showed high positive loadings in PC-1 indicating that component genotypes are high root yielding. Nagore morphotypes were low yielding but the root texture was good. Clustering of morphotypes grouped Poshita and Nagore separately with high inter-cluster distances indicating that both groups are highly divergent from each other, suggesting that there is sufficient scope for varietal improvement through hybridization.     

Indicators of soil quality and crop productivity assessment at a long-term experiment site in the lower Indo-Gangetic plains

Deterioration of soil quality under resource-intensive modern agriculture in the face of global climate change poses a huge risk to food security. Because of the complex nature, estimators of soil quality often rely upon a limited set of soil attributes, along with statistical data reduction techniques, for developing quality indices, whilst overlooking biological aspects and regional climatic variability. This study screened the most suitable soil quality indexing approaches for a rice-oilseed-based cropping system in the lower Indo-Gangetic plains (IGP). For this, surface soil samples (0–15 cm) were collected from an ongoing long-term fertilizer experiment with a rice-mustard-sesame cropping system in the IGP. The following treatments were assessed for their effect on soil quality: T₁-control, T₂-NPK (recommended NPK doses), T₃-NPKG (NPK + in situ green manuring), T₄-NPKGB (NPK + in situ green manuring + biofertilizer) and T₅-NPKF (NPK + farm yard manure FYM). We found that total organic carbon (TOC), β-glucosidase, CaCl₂ extractable S, alkaline KMnO₄ oxidizable N, activity of urease, amidase enzyme and mean weight diameter (MWD) were sensitive key indicators of soil quality. The NPKF treatment maintained the highest soil quality status (0.80–0.91), both under productivity and environmental protection goals, owing to the availability of decomposable carbon. Regression analysis showed a better agreement of equivalent rice yield with expert opinion (EO; R² = 0.89) than principal component analysis (PCA; R² = 0.76). Finally, we found that the expert opinion approach with the nonlinear scoring function was the best tool for soil quality assessment of the region.     

Evidence for two predominant viral lineages,recombination and subpopulation structure in begomoviruses associated with yellow vein mosaic disease of okra in India

Yellow vein mosaic disease (YVMD) caused by whitefly‐transmitted begomoviruses is an economically significant viral disease of okra. In this study, a survey of begomoviruses associated with YVMD was carried out in eight states and two union territories of India. A total of 92 full‐length DNA‐A components were sequenced and characterized. Sequence comparisons and population structure analysis revealed the existence of four begomovirus species. Two novel species were detected with several recombinationally derived genome fragments that probably originated from begomoviruses known to infect malvaceous and non‐malvaceous hosts. Among the four species, Bhendi yellow vein Maharastra virus (BYVMaV) and Bhendi yellow vein Madurai virus (BYVMV) were found to be predominant in okra, with BYVMV having a pan‐India distribution. There was evidence for a high degree of genetic variability and subpopulation structure within these four species. Neutrality tests suggested the occurrence of purifying selection acting upon these populations. The results of the current study have uncovered the diversity and genetic structure of okra‐infecting begomoviruses in India and generated potentially useful information for developing management strategies for YVMD.     

Growth potential and biocide tolerance of non-heterocystous filamentous cyanobacterial isolates from rice fields of Uttar Pradesh, India

Twenty-eight non-heterocystous filamentous cyanobacterial strains were isolated from different locations in the rice fields of Uttar Pradesh. These strains belonged to seven genera, namely Pseudanabaena, Limnothrix, Phormidium, Microcoleus, Plectonema, Lyngbya and Oscillatoria. A wide variation was observed in these strains with respect to dry weight, generation time and tolerance to biocides. Lyngbya palmarum and Oscillatoria acuminata showed maximum biomass (dry weight), while Pseudanabaena frigidum, Phormidium foveolarum, O. acuminata, Lyngbya palmarum and Lyngbya spiralis showed a significantly shorter generation time as compared to other strains studied. An interesting feature observed was that these non-heterocystous filamentous cyanobacteria possessed a remarkable tolerance to the biocides 2,4-dichlorophenoxyacetic acid, Malathion and Dimecron, at doses much higher than those recommended for rice crops.     

Regeneration of tree species in the sub-tropical forest of Alaknanda Valley, Garhwal Himalaya, India

We studied the regeneration of tree species in the sub-tropical forest of Alaknanda Valley in Garhwal Himalaya, India. The overall regeneration status was fairly good in the study area. Seedling density ranged between 520 and 1,240 seedlings per ha while the density of saplings varied between 400 and 800 saplings per ha. Out of eight sites studied, five sites, viz., A1 , A2 , B1 , B2and C2contained the highest number of seedlings (280-480 per ha) and saplings (200-440 per ha) for Pinus roxburghii and remaining three sites viz., C1, D1and D2represented the highest number of seedlings (240-400 per ha) and saplings (200-240 per ha) for Anogeissus latifolius. The DBH class distribution of the tree species revealed that the highest number of individuals was concentrated in the lower diameter classes while smallest numbers were found in the higher diameter classes. Species such as Acacia catechu, Anogeissus latifolius, Dalbergia sissoo, Engelhardtia spicata, Lannea coromandelica, Mallotus philippensis and Pinus roxburghii have the largest number of saplings and seedlings in the lower DBH classes, suggesting that they have good regeneration potential. Other species such as Aegle marmelos, Bauhinia variegata, Bombax ceiba, Cassia fistula, Erythrina variegata, Haldinia cordifolia, Mangifera indica, Ougeinia oojeinensis, Phyllanthus emblica, Syzygium cumini, Terminalia alata and Toona hexandra have either no or very small number of saplings in the lower DBH classes, which indicates that the status of these species implies poor regeneration.