Genetic analysis of selected almond genotypes and cultivars grown in Turkey using peroxidase-gene-based markers

Peroxidase plays important roles in many stress-related interactions and catalyzes important reactions in various physiological processes. Since peroxidase played critical roles in the evolution of almond(Prunus dulcis Miller(D.A Webb) syn P. amygdalus Batsch), peroxidase-gene-based analyses may increase the understanding of evolution of this species. Peroxidase gene polymorphism(POGP) markers were used to determine genetic diversity and relationships among 69 Turkish genotypes/cultivars and 27 foreign almond cultivars by using unweighted pair group method with arithmetic mean(UPGMA) analysis. This study is the first evaluation of the use of POGP markers for diversity analysis in almond.Totally, 83 fragments were obtained from eight peroxidase primer pairs, and polymorphism was identified as 94 %.Similarity level among the genotypes ranged between 0.63 and 0.93, and all materials were distinguished. In general,Turkish and foreign genotypes were mixed in clusters since they share a common genetic background and gene migration among the sites. Clusters were not based on geographic regions except for some minor groupings. This study indicated that peroxidase gene markers can be reliably used to determine genetic relationships in almonds.     

On the magnitude and dynamics of eddy covariance system residual energy (energy balance closure error) in subsurface drip-irrigated maize field during growing and non-growing (dormant) seasons

We investigated the magnitude and dynamics of the eddy covariance system (ECS) residual energy (energy balance closure error) for a subsurface drip-irrigated maize (Zea mays L.) field in 2005 and 2006 growing and non-growing (dormant) seasons. The corrections for coordinate rotation, oxygen, frequency, and Webb–Pearman–Leuning corrections improved the slope of the total convective energy (latent heat + sensible heat) with respect to the net available energy (from 0.68 to 0.84), but the data filtering (for horizontal and frictional wind speeds higher than 2 m s^?1 and lower than 0.2 m s^?1) had little effect on the slope. Also, the number of data points available for the analyses was reduced by 53 % after filtering. Overall, the daytime residual energy varied between ?100 and 200 W m^?2 during the dormant seasons and between ?500 and 600 W m^?2 during the growing seasons. Most of the nighttime residual energy ranged within ±40 W m^?2 during the calendar year in 2005 and within ?60 and 20 W m^?2 in 2006. During nighttime, the total convective energy is vertically distributed with respect to (R _n ? G), indicating that the total convective energy is independent of the variations in (R _n ? G). Secondly, it was observed that nighttime residual energy did not show any seasonal variation patterns throughout the two consecutive years and confined mostly within a narrow range of ±40 W m^?2, showing no dependency on seasonal changes in surface conditions. The maximum variation in residual energy was usually around frictional wind speed of 0.3–0.5 m s^?1 (varying between ?150 and 300 W m^?2) and then decreasing to a range of ±100 W m^?2 at higher frictional wind speeds. On average, the residual energy decreased by about 33 W m^?2 (after the intercept) for every 1.0 m s^?1 increase in frictional wind speed, whereas the residual energy decreased by about 4 W m^?2 (after the intercept) for every 1.0 m s^?1 increase in horizontal wind speed. Similar diurnal residual energy distribution patterns, with different magnitudes, were observed during growing and dormant seasons. Even though a slight decrease in residual energy was observed with increase in leaf area index (LAI) in both growing seasons, LAI did not have considerable influence on the seasonal variation in the residual energy. The residual energy was also evaluated by separating the data into morning and afternoon hours. We observed that the root-mean-squared difference value is slightly greater for the morning data than the afternoon, indicating greater residual energy in the morning hours due to weaker turbulent mixing than the afternoon. Overall, significant reduction in the available evapotranspiration data after applying a series of corrections possess challenges in terms of utilization of ECS for in-season irrigation management and crop water requirement determinations that needs to be further researched and addressed.     

Remote sensing and in situ-based estimates of evapotranspiration for subirrigated meadow,dry valley,and upland dune ecosystems in the semi-arid sand hills of Nebraska,USA

Water consumed through evapotranspiration (ET) impacts local and regional hydrologic regimes on various spatial and temporal scales. Estimating ET in the Great Plains is a prerequisite for effective regional water resource management of the Ogallala (High Plains) Aquifer, which supplies vital water resources in the form of irrigation for extensive agricultural production. The Sand Hills region of Nebraska is one of the largest grass-stabilized eolian (windblown) sand dune formations in the world, with an area of roughly 50,000–60,000 km² that supports a system of five major land cover types: (1) lakes, (2) wetlands (with lakes, ~5%), (3) subirrigated meadows (water table is within ~1 m of surface; ~10%), (4) dry valleys (water table is 1–10 m below surface; ~20%), and (5) upland dunes (water table is more than 10 m below surface; ~65%). Fully understanding the hydrologic regime of these different ecosystems is a fundamental challenge in regional water resource assessment. The surface energy and water balances were analyzed using Bowen Ratio Energy Balance Systems (BREBS) at three locations: (1) a meadow, (2) a valley, and (3) an upland dune. Measurement of the energy budget by BREBS, in concert with Landsat remote sensing image processing for 2004 reveals strong spatial gradients between sites in latent heat flux that are associated with undulating topographic relief. We find that daily estimates of ET from BREBS measurements and remote sensing agree well, with an uncertainty within 1 mm, which is encouraging when applying remote sensing results across such a broad spatial scale and undulating topography.     

Antioxidant Activities of Citrus Albedo and Flavedo Fragments Against Fish Lipid Oxidation

ABSTRACT

This research aimed to inhibit the oxidation of fish lipid by adding the ethanol extracts of albedo and flavedo fragments of grapefruit, sour orange, and bergamot. The samples were stored at 25°C, and analyses were performed on weekly intervals. The albedo fragments of sour orange extract had the highest antioxidant activity (0.342 ± 0.002 µM Trolox) and total phenolic content (5.29 ± 0.00 g GAE/100 g dry matter). Lipid oxidation increased rapidly in control samples compared to the extract treatments. The lowest scores for thiobarbituric acid reactive substances (TBARS), para-anisidine value, peroxide value, and UV absorbance values were determined in sour orange albedo extracts as 5.21 mg MDA/kg, 17.81 and 4.78 meq O₂/kg, 2.24, and 0.403, respectively, at the end of the storage. More successful results were obtained with the peels of grapefruit and bergamot in supressing the lipid oxidation. Bergamot extract was the most preferred citrus in terms of sensory analyses.     

Effect of genetic variation on phenolic acid and policosanol contents of Pegaso wheat lines

Total phenolic acid and policosanol contents and compositions of bran from an Italian bread wheat variety Pegaso and its 11 near-isogenic lines were measured. The near-isogenic wheat lines differed at one or more loci coding for storage proteins. The genetic variation included deletions, additions and/or combinations of variations. Almost 95% or more of phenolic acids were in the bound form. Ferulic acid was the predominant bound phenolic acid present in wheat bran samples. Other phenolic acids were p-coumaric, vanillic and syringic acids. Tetracosanol, docosanol, hexacosanol, octacosanol, tricosanol and heneicosanol were found as major policosanol compounds in their decreasing order. Highly significant genotypic differences were observed in total phenolic acid and policosanol concentrations. None of the genetic lines had higher phenolic acid contents than the parent line Pegaso, whereas some of the lines had more policosanol levels. In general, both total phenolic acid composition and contents were higher with genetic lines that varied at Glu-1 loci with 2+Dy high molecular weight glutenin subunit (HMW-GS) (Pegaso 184), variation at Gli-D2 loci (Pegaso 219) and single null A1 (variation at Gli-1/Glu-3 loci; Pegaso 30). Highest total policosanol content was observed with the double null at Glu-A1/Glu-D1 loci (Pegaso 236). These findings may lead to new opportunities for wheat breeders and eventually commercial wheat growers to promote the production of wheat with enhanced levels of health beneficial compounds.     

Effect of irrigation amounts applied with subsurface drip irrigation on corn evapotranspiration, yield, water use efficiency, and dry matter production in a semiarid climate

Quantifying the local crop response to irrigation is important for establishing adequate irrigation management strategies. This study evaluated the effect of irrigation applied with subsurface drip irrigation on field corn (Zea mays L.) evapotranspiration (ETc), yield, water use efficiencies (WUE = yield/ETc, and IWUE = yield/irrigation), and dry matter production in the semiarid climate of west central Nebraska. Eight treatments were imposed with irrigation amounts ranging from 53 to 356 mm in 2005 and from 22 to 226 mm in 2006. A soil water balance approach (based on FAO-56) was used to estimate daily soil water and ETc. Treatments resulted in seasonal ETc of 580–663 mm and 466–656 mm in 2005 and 2006, respectively. Yields among treatments differed by as much as 22% in 2005 and 52% in 2006. In both seasons, irrigation significantly affected yields, which increased with irrigation up to a point where irrigation became excessive. Distinct relationships were obtained each season. Yields increased linearly with seasonal ETc (R² = 0.89) and ETc/ETp (R² = 0.87) (ETp = ETc with no water stress). The yield response factor (ky), which indicates the relative reduction in yield to relative reduction in ETc, averaged 1.58 over the two seasons. WUE increased non-linearly with seasonal ETc and with yield. WUE was more sensitive to irrigation during the drier 2006 season, compared with 2005. Both seasons, IWUE decreased sharply with irrigation. Irrigation significantly affected dry matter production and partitioning into the different plant components (grain, cob, and stover). On average, the grain accounted for the majority of the above-ground plant dry mass (≈59%), followed by the stover (≈33%) and the cob (≈8%). The dry mass of the plant and that of each plant component tended to increase with seasonal ETc. The good relationships obtained in the study between crop performance indicators and seasonal ETc demonstrate that accurate estimates of ETc on a daily and seasonal basis can be valuable for making tactical in-season irrigation management decisions and for strategic irrigation planning and management.     

Effects of inactive parapoxvirus ovis on cytokine levels in rats

The aim of this study is to determine the effects of iPPOV on pro-inflammatory and anti-inflammatory cytokine levels in rats. iPPOV (1 ml/rat) was administered intraperitoneal route to 49 rats, except for 7 rats (Control, 0 group). Serum samples were collected from 7 rats at 1st, 2nd, 4th, 8th, 12th, 16th and 24th hr after treatments. Levels of TNF-α, IL-6, IL-12 and IL-10 were determined using ELISA. Administration of iPPOV stimulated TNF-α (16th and 24th hr) and IL-6 (12th, 16th and 24th hr) synthesis and caused fluctuations in IL-10 and IL-12 concentrations. In conclusion, increased cytokine levels could be attributed to immunomodulatory activity of iPPOV, however, detailed studies are required to fully understand effects of iPPOV on immune system.     

Serum concentration of some acute phase proteins in naturally occurring canine babesiosis: a preliminary study

BACKGROUND: Serum concentrations of acute phase proteins can provide valuable diagnostic information in the detection, prognosis, or monitoring of disease. Information available on the acute phase response in naturally occurring canine babesiosis is limited. OBJECTIVE: The purpose of this investigation was to retrospectively evaluate serum concentrations of haptoglobin, C-reactive protein, and ceruloplasmin in dogs naturally infected with Babesia canis. METHODS: Haptoglobin, C-reactive protein, and ceruloplasmin concentrations were measured in serum samples from dogs with uncomplicated (n = 6) and complicated (n = 1) babesiosis and compared with 6 healthy dogs. RESULTS: Serum C-reactive protein and ceruloplasmin concentrations were significantly higher in dogs with babesiosis; however, serum haptoglobin concentration was significantly lower compared with control dogs (P <.01). CONCLUSIONS: Results of this study suggest that acute phase protein concentrations could be beneficial in the diagnosis and determination of the severity of babesiosis in dogs.     

Purification and characterization of Ocimum basilicum L. polyphenol oxidase

A partial characterization of polyphenol oxidase (PPO) activity in Ocimum basilicum L. is described. PPO in O. basilicum L. was extracted and purified through (NH4)2SO4 precipitation, dialysis, and a Sepharose 4B-l-tyrosine-p-aminobenzoic acid affinity column. The samples obtained from (NH4)2SO4 precipitation and dialysis were used for the characterization of PPO. At the end of purification by affinity chromatography, 11.5-fold purification was achived. The purified enzyme exhibited a clear single band on sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The molecular mass of the enzyme was estimated to be approximately 54 kDa. The contents of total phenolic and protein of O. basilicum L. extracts were determined. The total phenolic content of O. basilicum L. was determined spectrophotometrically according to the Folin-Ciocalteu procedure and was found to be 280 mg 100 g(-1) on a fresh weight basis. The protein content was determined according to the Bradford method. The enzyme showed activity to 4-methylcatechol, catechol, and pyrogallol substrates, but not to tyrosine. Therefore, of these three substrates, 4-methylcatecol was the best substrate due to the highest V(max)/K(m) value, followed by pyrogallol and catechol. The optimum pH was at 6, 8, and 9 for 4-methylcatechol, catechol, and pyrogallol, respectively. The enzyme had an optimum temperature of 20, 40, and 50 degrees C for 4-methylcatechol, catechol, and pyrogallol, respectively. It was found that optimum temperature and pH were dependent on the substrates studied. The enzyme activity with increasing temperature and inactivation time for 4-methylcatechol, catechol, and pyrogallol substrates decreased due to heat denaturation of the enzyme.