Tagging quantitative trait loci for heading date and plant height in important breeding parents of rice (Oryza sativa)

Heading date and plant height are important determinants for plant growth rate. In this study, simple sequence repeat markers were used to tag quantitative trait loci (QTL) using a recombinant inbred line mapping population derived from two important breeding parents, genetic stock Kaybonnetlpa1-1 and indica cultivar Zhe733, using data collected under field and greenhouse conditions. Interval mapping, composite interval mapping, and multiple interval mapping were performed to map QTL for heading date and plant height, and to identify epistatic interactions between the QTL. qHD3.1 on chromosome 3 from KBNTlpa1-1 had the largest effect on heading date contributing an average of 28.4 % of the total phenotypic variation. qHD7.1, 7.2, and 8.1 also had a significant contribution to heading date from Zhe733 averaging 8.1, 12.8, and 12.8 % of the phenotypic variance, respectively, and there was a positive additive-by-additive epistatic interaction between qHD7.1 and qHD8.1. QTL, qPHT1.1 and qPHT3.1, for plant height were detected on chromosomes 1 and 3, respectively. qPHT1.1 contributed the largest effect representing 38.2 % of the total phenotypic variation. Comparison of the QTL identified in our study with previous results revealed that the chromosomal locations for QTL coincided closely with positions reported previously in other rice populations worldwide, suggesting that these QTL have coevolved and become domesticated. The tightly linked SSR markers that flank these QTL should be desirable for tagging heading date and plant height genes and facilitating their incorporation into advanced breeding lines using marker assisted selection.     

Voluntary Certification Design Choices Influence Producer Participation,Stakeholder Acceptance,and Environmental Sustainability in Commodity Agriculture Sectors in Tropical Forest Landscapes

Voluntary certification programs are one type of intervention used to incentivize the agricultural commodity sector in tropical landscapes to reduce deforestation and improve sustainability. Cases of the Roundtable on Sustainable Palm Oil (RSPO) voluntary certification program in Indonesia and the Sustainable Agriculture Network (SAN), voluntary certification for cattle in Brazil, are used to contrast the role taken in two significantly different programs to render sustainability outcomes. While producers in both countries follow a similar path toward compliance with certification standards, only the RSPO program offers enticements for producers to participate in the intermediate stages of compliance by offering membership in its affiliated industry roundtable. Design choices about the core activities of a program (adoption, implementation, and enforcement and monitoring) that are ancillary to standards setting are found to be opportunities for providing benefits to both producers and civil society stakeholders without compromising the program’s rigor. A framework is proposed to understand voluntary certification programs as both creators and brokers of benefits between producers and other sustainability stakeholders, potentially providing an approach to simultaneously increase participation and maintain program rigor.     

Cattle affect early post-fire regeneration in a Nothofagus dombeyi-Austrocedrus chilensis mixed forest in northern Patagonia, Argentina

In forest ecosystems where infrequent, severe fires have been an important process in shaping ecosystem structure, understanding the effects of introduced livestock on post-fire recovery of the vegetation is essential for effective forest resource management and preservation. In Nahuel Huapi National Park in northwestern Patagonia, we studied the effects of livestock on the post-fire recovery of a Nothofagus dombeyi-Austrocedrus chilensis forest that was burned in 1999. We experimentally excluded cattle by fencing plots and compared the vegetation characteristics of fenced and unfenced control plots over a 5-year period. Although cattle did not significantly reduce total plant cover or total species richness, they did reduce maximum heights of woody species including the dominant tree species. Chusquea culeou, a tall understory bamboo, can impede establishment and height growth of the dominant tree species. Although C. culeou accounts for the largest percentage of cattle diet, its mean cover and mean maximum height were not strongly affected by cattle. The reduction in the height growth of seedlings of N. dombeyi and Austrocedrus in the unfenced areas implies that presence of cattle in the recently burned areas may contribute to a post-fire transition from tall forest to bamboo-dominated shrubland that is already widespread in this landscape. Thus, these results provide support for the fencing of recently burned Nothofagus and Austrocedrus forests in the national parks for periods long enough to allow the dominant tree species to grow to heights at which they are no longer severely inhibited by cattle browsing.     

Comparing local vs. global visible and near-infrared (VisNIR) diffuse reflectance spectroscopy (DRS) calibrations for the prediction of soil clay, organic C and inorganic C

Local, field-scale, VisNIR-DRS soil calibrations generally yield the most accurate predictions but require a substantial number of local calibration samples at every application site. Global to regional calibrations are more economically efficient, but don't provide sufficient accuracy for many applications. In this study, we quantified the value of augmenting a large global spectral library with relatively few local calibration samples for VisNIR-DRS predictions of soil clay content (clay), organic carbon content (SOC), and inorganic carbon content (IC). VisNIR models were constructed with boosted regression trees employing global, local + global, and local spectral data, using local samples from two low-relief, sedimentary bedrock controlled, semiarid grassland sites, and one granitic, montane, subalpine forest site, in Montana, USA. The local + global calibration yielded the most accurate SOC predictions for all three sites [Standard Error of Prediction (SEP) = 3.8, 6.7, and 26.2 g kg^− 1]. This was similarly true for clay (SEP = 95.3 and 102.5 g kg^− 1) and IC (SEP = 5.5 and 6.0 g kg^− 1) predictions at the two semiarid grassland sites. A purely local calibration produced the best validation results for soil clay content at the subalpine forest site (SEP = 49.2 g kg^− 1), which also had the largest number of local calibration samples (N = 210). Using only samples from calcareous soils in the global spectral library combined with local samples produced the best SOC and IC results at the more arid of the two semiarid sites. Global samples alone never achieved more accurate predictions than the best local + global calibrations. For the temperate soils used in this study, the augmentation of a large global spectral library with relatively few local samples generally improved the prediction of soil clay, SOC, and IC relative to global or local samples alone.     

Milk carbon footprint of silvopastoral dairy systems in the Northern Peruvian Amazon

Tropical Animal Health and Production - The objective of the study was to assess the effects of water deprivation on the burden of gastrointestinal nematodes in Nguni does. A survey was piloted on...     

Rock crab predation of juvenile sea scallops: the functional response and its implications for bottom culture

The functional response describes how consumption rate of individual predators changes as prey density changes, and can have important implications for the bottom culture of scallops. We examined (i) the functional response of rock crabs (Cancer irroratus) preying on juvenile sea scallops (Placopecten magellanicus); (ii) the effect of substrate type and scallop size on the functional response; and (iii) the underlying behavioural mechanisms of observed functional responses. Specifically, we quantified predation rate and behaviours, such as the proportion of time spent searching for prey, encounter rate between predators and prey and the outcomes of encounters, when individual rock crabs were offered a range of scallop density (2–50 or 11–111 scallops m⁻²) and two size classes of scallops (∼ ∼25 and ∼ ∼35 mm shell height) on two different substrate types (“glass-bottom” and “granule”). We found that crab predation rate on small juvenile scallops increased at a decelerating rate with prey density to a plateau at high prey density on both substrates, indicating a hyperbolic (type II) functional response. Crab predation rate on large juvenile scallops was independent of prey density (i.e., no functional response evident), suggesting that crabs were at their satiation level. Prey density did not influence any behaviour except encounter rate on small juvenile scallops, which increased as prey density increased. Substrate type influenced crab predation: maximum predation rate of crabs on small juvenile scallops and encounter rate with either size of juvenile scallops was lower on granule than on glass-bottom. Our results in the laboratory suggest that crabs could potentially be swamped if scallops are seeded at a high density in the field. However, many factors in the field may influence the functional response. For example, the presence of multiple prey types may lead to sigmoid functional responses, while the presence of many crab individuals may lead to aggregation of crabs in areas of high prey density.     

Evaluation of Methionine Supplements and Their Use in Grain‐based Feeds for Litopenaeus vannamei

The use of dietary supplements in commercial shrimp production feeds is increasing because of the need to reduce marine meal (e.g., fish meal) content. Our study evaluated leaching and apparent digestibility of artificial methionine supplements and their use in determining appropriate feeding levels of methionine in practical fish meal replacement diets fed to Litopenaeus vannamei. Three forms of methionine were evaluated: dl ‐methionine HCl, various mineral chelates of methionine, and a short‐chain synthetic methionine polymer. Results showed a significant increase (P < 0.05) in leaching loss of methionine from feeds with decreasing salinity and that leaching was significantly higher for dl ‐methionine than other forms in all salinity treatments. No significant difference was shown in apparent digestibility of methionine among digestibility diets, with the exception of diets supplemented with dl ‐methionine HCl. In two 6‐wk clear‐water growth trials, no significant difference in weight gain was shown by shrimp fed diets containing more than 0.4% methionine (1.14%, as percent of protein). This suggests that an appropriate feed level of methionine for practical plant protein‐based feeds is less than 0.4% of the diet. Results also indicated that mineral‐chelated and polymerized forms of methionine are appropriate for supplementation of plant protein‐based feeds.