A minimum data set for evaluating the ecological soil functions in remediation projects

Purpose

Soil functioning becomes a matter of growing concern in soil remediation projects as, apart from preparing contaminated land for construction purposes, some parts of the sites are usually transformed into green spaces for recreation and inspiration. The objective of this paper is to develop and apply a minimum data set (MDS) for evaluating the ecological soil functions for green areas in remediation projects.

Materials and methods

The MDS was chosen from the previous applications in literature. Using a nonlinear scoring algorithm to transform observed data into sub-scores for evaluating ecological soil functions, the MDS was applied on the Kvillebäcken site in Sweden. The mean sub-scores of the individual soil quality indicators (SQIs) were integrated into a soil quality index to classify the soil into one of the five soil classes. Monte Carlo simulations were used to treat the uncertainties in the predicted soil class resulting from spatial heterogeneity of SQIs, a limited sampling size, and analytical errors.

Results and discussion

The suggested MDS consists of soil texture, content of coarse material, available water capacity, organic matter content, potentially mineralizable nitrogen, pH, and available phosphorus. The high mean sub-score for organic matter at Kvillebäcken indicated that the soil was rich on organic matter thus having a good water storage and nutrient cycling potential. However, the low mean sub-score for potentially mineralizable nitrogen indicated limited biological activity in the soil. The low mean sub-score for the content of coarse fragments indicated plant rooting limitations. Further, the soil quality index (that integrates the sub-scores for SQIs) corresponded to soil class 3 and a medium soil performance with a high certainty.

Conclusions

The suggested MDS can provide practitioners with relevant basic information on soil’s ability to carry out its ecological functions. The suggested scoring method helps to interpret and integrate information from different SQIs into a decision-making process in remediation projects.     

Culture system and long-term storage of culture media in the in vitro production of bovine embryos

The optimum culture system for in vitro matured and fertilised oocytes still remains to be clarified. Culture media (CM) for mammalian embryos are routinely prepared fresh for use and preserved under refrigeration during one or two weeks. The purposes of this work were (1) to compare the efficiency of a synthetic oviduct fluid (SOF) with two different bovine serum albumin (BSA) concentrations (3 and 8 g/L) for the in vitro production of bovine blastocysts, (2) to test the effect of timing on adding fetal calf serum (FCS) to the SOF, and (3) to evaluate the effects on bovine embryo development of freezing and lyophilisation as procedures for preserving the SOF. Supplementation of SOF with 3 g/L BSA increased Day-7 blastocyst expansion rates (18.3 ± 1.6 vs. 14.4 ± 0.7; P < 0.05), although no differences in hatching rates were found. Addition of FCS to SOFaa (SOF with amino acids) medium supplemented with sodium citrate (SOFaaci) at 48 and at 72 h post-insemination (PI) allowed obtaining higher Day-6 embryo development rates than when FCS was added at 18 or 96 h PI (Day-6 morulae + blastocyst rate: 30.0 ± 1.1, 40.8 ± 1.1, 43.9 ± 2.3 and 39.3 ± 0.5 for FCS addition at 18, 48, 72 and 96 h, respectively). Hatching rates were significantly improved when serum was added at 72 h PI. Finally, both refrigeration and lyophilisation appeared as useful cryopreservation procedures for SOFaaci, although a significant loss of its ability to support embryo development, compared to the control fresh culture medium, was observed.     

Lagrangian numerical simulations of canopy air flow effects on maize pollen dispersal

A three-dimensional Lagrangian random flight model was constructed for numerical simulations of maize pollen dispersion. The model simulates the paths of tracer particles which are interpreted as individual pollen grains, with particle motion determined by the mean flow and a stochastic turbulent velocity. The Lagrangian approach was chosen because it can be extended to complex flow regimes. The capacity of the model to simulate measured patterns of pollen deposition was tested by comparing simulations to measurements for a small maize canopy isolated within a large field of soybeans near Ames, Iowa, USA in August 2003. For this application, measurements from a single point meteorological observation were used to generate a surface layer wind profile over the maize canopy and surrounding soybean field. The method used to construct the wind field included development of internal boundary layers as the airflow passed from one canopy surface to another. The dispersion model produced spatial patterns of particle deposition that included the sharp near-source deposition gradient consistent with observations. The model tended to over-predict particle deposition near the source field and under-predict deposition at greater distances. Inclusion of the effect of the roughness difference between the maize canopy and the surrounding soybean canopy on the flow field was found to be essential for simulation accuracy. Agreement with observations improved considerably by including an approximation for vertical motions induced by changes in surface cover. These results indicate that the Lagrangian random flight model provides a realistic simulation of pollen dispersal from an isolated maize canopy. A more complete hydrodynamic model should be explored to better represent the influence of surface inhomogeneities on winds and turbulence.     

Diagnostic implications of detection of proteinase K-resistant protein in spleen, lymph nodes, and brain of sheep.

Brain, spleen, and selected lymph nodes from sheep with clinical signs of scrapie were analyzed for presence of proteinase K-resistant protein (PrP-res). Diagnosis of scrapie on the basis of detection of PrP-res was compared with diagnosis on the basis of histologic evaluation of the brain from clinically affected or exposed sheep. Proteinase K-resistant protein was found in every brain that was histologically positive for scrapie, and in addition, was found in the brain of several clinically positive sheep that were not diagnosed as scrapie-positive by histologic evaluation. Proteinase K-resistant protein was also found in 87% of the spleens and lymph nodes from sheep that had PrP-res detected in brain homogenates. Therefore, analysis of sheep brain, spleen, or lymph nodes for PrP-res provided a diagnostic approach that was superior to histologic examination alone for detection of naturally scrapie agent-infected sheep.     

Radiochemical distribution and decline studies with bromoxynil octanoate in wheat

Bromoxynil octanoate labelled with ¹⁴C in the ring or in the cyano-group was applied to wheat seedlings at the two-leaf or fully-tillered stage and at rates equivalent to up to 16 oz a.i./acre. The plants were grown either in environmental chambers under controlled conditions for up to 28 days, or outdoors under field conditions for various periods up to harvest. Initially, elimination of radioactivity occurred more rapidly with bromoxynil-cyano-[¹⁴C]-octanoate than with bromoxynil-ring-[¹⁴C]-octanoate, indicating metabolic attack on the cyano group. Under outdoor conditions with ring-[¹⁴C]-herbicide applied at the two-leaf stage, only 12% of the radioactivity was retained after 28 days, principally in the treated leaves. When application was made at fully-tillered stage, about 33% of the ¹⁴C was retained after 56 days, almost entirely in the treated senescent leaves at the base of the plant. There was very little translocation of the herbicide or of any major metabolite. The level of radioactivity in harvested grain and in straw more than 7.5 cm above the ground was very low, even after very late application of ring-[¹⁴C]-labelled herbicide. The amount of bromoxynil octanoate, together with any metabolite retaining part of the aromatic ring, did not collectively exceed the equivalent of approx. 0.01 parts/million bromoxynil octanoate.     

Natural bovine lentivirus type 1 infection in Holstein dairy cattle. II. Lymphoid tissue lesions

Bovine immunodeficiency virus (BIV) in Holstein cows was associated with morphologic evidence of lymphoid organ deficiency. Cows were subjected to normal management practices including parturition and lactation without adverse environmental stresses. During the clinical disease process there was marked weight loss and wasting with frequent and severe concurrent infections. Lymphoid follicular hyperplasia and dysplasia in lymph nodes, and hypertrophy and hyperplasia in hemal lymph nodes were characteristics of the lymphoid tissues. Atrophy of lymphoid cell compartments with depletion of lymphocytes and a lymphocytic lymphoid folliculitis were components of the lymphoid system pathology. The nodal tissue lesions resembled those observed in feline, simian, and human lentiviral disease. A functional correlation with immune system deficiency was the development of multiple bacterial infections which failed to resolve after appropriate therapy. The BIV-associated disease syndrome in dairy cows may be useful as a model system for investigation of the pathogenesis of the lymphoid organ changes that occur in humans and animals with lentiviral infection.     

Polymerase chain reaction detection of Mycobacterium tuberculosis complex and Mycobacterium avium organisms in formalin-fixed tissues from culture-negative ruminants

In the US eradication program for bovine tuberculosis, a definitive diagnosis depends on the isolation of Mycobacterium bovis. However, in some cases bacterial culture is unsuccessful, even though the tissue is considered suspicious by histopathology because granulomatous lesions and acid-fast organisms are present. The purpose of this study was to determine if polymerase chain reaction (PCR) tests on formalin-fixed tissue would successfully identify the organisms observed in suspect lesions from culture-negative animals. Diagnostic laboratory records were used to select paraffin blocks of tissue from 102 ruminants that had suspect microscopic lesions but no bacterial isolation. Sections from these blocks were examined with PCR primers for IS6110 to detect Mycobacterium tuberculosis complex infection, or with 16S ribosomal RNA and IS900 primers for detection of Mycobacterium avium. The PCR tests successfully identified a mycobacterial infection in 58 of 102 tissues, including 41 M. tuberculosis complex and 17 M. avium (11 subspecies paratuberculosis). These results demonstrate that PCR testing of formalin-fixed tissue, in combination with bacterial culture, may increase the effectiveness of laboratory diagnostic efforts to detect and identify the most common mycobacterial diseases of ruminants.