Detection of hepatitis E virus shedding in feces of pigs at different stages of production using reverse transcription-polymerase chain reaction.

The aim of this study was to determine at which production stages hepatitis E virus (HEV) is shed by the highest number of pigs and to estimate the relative risk associated with each stage. For this purpose, 146 fecal samples of pigs from 21 farms were studied. In addition, 1 sample from the manure ditch and another sample of drinking water, collected directly from the trough located in the pen, were taken from 16 farms. HEV RNA was detected in fecal samples from 34 pigs (23.29%). The production stages in which most pigs excreted HEV were weaners (41.7%) and pigs in the first month of feeding (60%). The results of the statistical analysis showed that the principal significant risk stage in HEV shedding was the first month of feeding (odds ratio [OR] 19.5, 95% CI 3.59-106.07, P = 0.001) followed by the weaners stage (OR 9.3, 95% CI .78-48.42, P = 0.008). In 8 out of 16 farms tested (50%) HEV RNA was detected in raw manure and in the water trough of only 1. Detection of HEV in manure ditches raises the concern of how to deal with manure of swine origin, because it is used as soil fertilizer.     

Molecular tracing of <Emphasis Type="Italic">Bradyrhizobium </Emphasis>strains helps to correctly interpret <Emphasis Type="Italic">Acacia mangium </Emphasis>response to inoculation in a reforestation experiment in Madagascar

A field inoculation experiment using two Bradyrhizobium sp. strains was set up in Madagascar to test the growth response of Acacia mangium and to follow up the survival of inoculant strains using molecular tools. Three months after inoculation, one of the inoculant strains, AUST13c, exhibited a marked growth-promoting effect with a shoot height about 40% higher than that of the uninoculated control plants or TEL8-inoculated plants. The positive effect on tree growth initially observed with AUST13c was no more significant 6 months after transfer to the field and disappeared completely at 13 and 19 months. Analyses of nodule bacterial rRNA by PCR/RFLP displayed an early contamination of the different inoculation treatments by AUST13c 3 months after inoculation, spreading to almost all nodules of the trial 6 months later. This work clearly demonstrated that the progressive reduction of the positive effect of AUST13c inoculation on tree growth after field transplanting was not due to a progressive disappearance of this introduced strain but, on the contrary, was related to the widening spreading of AUST13c in all the plots. This was attributed to a higher competitiveness and effectiveness of AUST13c over the local strains and TEL8.     

Prevalence and genetic characterization of Hepatitis E virus in paired samples of feces and serum from naturally infected pigs

This study describes the distribution of Hepatitis E virus (HEV) in a naturally infected swine population and the genetic relatedness of HEV strains on swine farms in Spain. Of fecal and serum samples collected from 131 pigs and manure-ditch samples collected from 17 farms, HEV was detected in 16%, 14%, and 59%, respectively, for an overall prevalence rate of 23%. The maximum prevalence rates for feces and serum were in pigs 5 to 12 wk old. A high prevalence of the virus in feces (18%) was observed in sows. Gene sequencing was performed on 6 strains from feces, serum, and manure ditch: the nucleotide identities varied from 81.5% to 99% when compared with those of other strains of genotype 3 isolated from swine. This is the first study in Europe to show the variation in virus distribution by age in feces and serum in a naturally infected swine population.     

Participatory development of decision support systems: which features of the process lead to improved uptake and better outcomes?

Decision support systems (DSSs) are important in decision-making environments with conflicting interests. Many DSSs developed have not been used in practice. Experts argue that these tools do not respond to real user needs and that the inclusion of stakeholders in the development process is the solution. However, it is not clear which features of participatory development of DSSs result in improved uptake and better outcomes. A review of papers, reporting on case studies where DSSs and other decision tools (information systems, software and scenario tools) were developed with elements of participation, was carried out. The cases were analysed according to a framework created as part of this research; it includes criteria to evaluate the development process and the outcomes. Relevant aspects to consider in the participatory development processes include establishing clear objectives, timing and location of the process; keeping discussions on track; favouring participation and interaction of individuals and groups; and challenging creative thinking of the tool and future scenarios. The case studies that address these issues show better outcomes; however, there is a large degree of uncertainty concerning them because developers have typically neither asked participants about their perceptions of the processes and resultant tools nor have they monitored the use and legacy of the tools over the long term.     

Embryogenesis in vitro of several Citrus species and cultivars

Summary

A number of experiments were performed to obtain somatic embryos and embryogenie cell lines from several species and cultivars of citrus by in vitro ovule culture. The source of ovules (pre-anthesis and post-anthesis), incubation conditions (light and darkness) and several modifications of the culture medium were evaluated. All the species and cultivars assayed produced somatic embryos and “pseudobulbi”, but production of friable embryogenie callus was species dependent. The small proliferation of callus and globular bodies recovered from the primary cultures were suitable for recovering embryogenie callus lines by periodical subculturing into fresh medium. After several monthly subcultures discarding embryos and “pseudobulbi”, cell lines virtually devoid of organized structures were obtained from three cultivars of sweet orange, sour orange and Cleopatra mandarin. In all these species, embryogenesis was restored spontaneously and/or by substitution of sucrose by maltose or lactose in the culture medium. The embryos germinated and produced phenotypically normal plants.     

Soil factors influencing the growth response of <Emphasis Type="Italic">Acacia holosericea</Emphasis> A. Cunn. ex G. Don to ectomycorrhizal inoculation

Australian acacias like Acacia holosericea are excellent candidates for the revegetation of arid zones in Africa. Their high ability to develop multiple symbioses with soil microorganisms is crucial to their rapid development in adverse climatic and edaphic conditions. These symbioses include nitrogen fixation with rhizobia, vesicular arbuscular mycorrhization and ectomycorrhization. We set up an experiment to test the growth response of A. holosericea to ectomycorrhizal inoculation in 13 different soils from Senegal. After autoclaving the soil, the experiment was conducted in a greenhouse for four weeks. Plants were inoculated with Pisolithus albus strain IR100. The following parameters were measured: plant biomass, N, P, K and Ca foliar composition, spontaneous nodulation rate, and ectomycorrhizal colonization. Data were analyzed in light of the physical, chemical and total microbial characteristics of the soil. The results demonstrated a global promoting effect of P. albus inoculation on plant (shoot and root) growth and on foliar P and K, together with a depressive effect on N, while Ca rates were barely affected. Interestingly, spontaneous nodulation with putative water- or airborne rhizobia was stimulated after P. albus inoculation. However, these nodules seemed poorly effective, as they failed to cause any change in plant growth or in foliar N composition within the nodulated and nonnodulated control plants. These results show that plant growth response to ectomycorrhizal inoculation is greatly dependent on soil characteristics, and that root ectomycorrhizal colonization is influenced by biotic factors such as soil microbiota. From a practical point of view, data from the present study demonstrate that it is possible to optimize the effect of fungi on plant growth by screening soils under nursery conditions.     

Improvement of nitrogen fixation in Acacia mangium through inoculation with rhizobium

Acacia mangium, a N₂‐fixing tree legume, has become a major plantation tree species in the tropical humid and sub-humid zones. In addition to being a major pulp-wood producer, the tree has a good potential to restore soil fertility as a fallow species in agroforestry systems, and as a fuel species. In this paper, we report an overview of the results from several rhizobium inoculation field trials in different edaphic and ecological conditions, conducted by the CIRAD-Forêt (The Forest Program of Centre de Coopération Internationale en Recherche Agronomique pour le Développement) in partnership with national research organizations of various countries of the humid and sub-humid lowlands of West Africa and Cook Islands. Rhizobium inoculation had a positive effect on tree growth up to 39 months after tree planting. Immunological identification of the Bradyrhizobium strains present in the nodules confirmed the persistence of the more efficient introduced strains up to 42 months after transfer of the inoculated trees to the field. In Côte d'Ivoire, nitrogen derived from atmospheric N₂ fixed symbiotically by A. mangium was 50% in the whole trial and up to 90% in plots with less fertile soils when the trees were inoculated with an efficient strain.     

Accurate temperature imaging based on intermolecular coherences in magnetic resonance

Conventional magnetic resonance methods that provide interior temperature profiles, which find use in clinical applications such as hyperthermic therapy, can develop inaccuracies caused by the inherently inhomogeneous magnetic field within tissues or by probe dynamics, and work poorly in important applications such as fatty tissues. We present a magnetic resonance method that is suitable for imaging temperature in a wide range of environments. It uses the inherently sharp resonances of intermolecular zero-quantum coherences, in this case flipping up a water spin while flipping down a nearby fat spin. We show that this method can rapidly and accurately assign temperatures in vivo on an absolute scale.     

Driving factors of synchronous dynamics in brown trout populations at the rear edge of their native distribution

The classical debate about the roles of endogenous factors and external drivers in regulating populations continues to be a very active area of scientific research, and these roles are even more complex in populations located in geographically marginal areas. We tested three hypotheses on two separate brown trout populations inhabiting the southernmost basins of the Iberian Peninsula, with the aims of determining the relationships among (a) rainfall and air temperature for each season preceding fish sampling and the observed age group densities; (b) environmental synchrony and density synchrony for all possible pairs of sites; and (c) physical habitat similarity and the similarity of the density response to climatic drivers among pairs of sites. For this purpose, demographic series (98 surveys at 14 sampling sites), climatic conditions (rainfall and air temperature) and site habitat characteristics (physiogeographic and quality index values) were analysed between 2006 and 2014. The results show how the synchrony in the study populations is the result of a Moran effect directed mainly by winter precipitation and conditioned by the habitat similarity (highlighting the altitude, the distance to the upper limit and IHF index, along with the Euclidian distance among pairs of sites of the whole set of habitat variables). Preserving the heterogeneity of these habitat characteristics will increase the resilience of trout populations that inhabit this rear edge of distribution. The current context of global climate warming predicts extremely drastic changes in the dynamics of external drivers that regulate the trout populations in the study region.     

Management of ectomycorrhizal symbionts associated to useful exotic tree species to improve reforestation performances in tropical Africa

? The objective of this review was to summarize scientific data on the symbiotic status of exotic tree species useful in tropical Africa, and to update reports about their growth improvement through microbial inoculations, especially ectomycorrhizal symbionts.

? The studies reviewed microbial symbionts associated to exotic tree species belonging to Myrtaceae, Pinaceae, Casuarinaceae and Leguminosae. In their native areas, these trees are associated either with ectomycorrhizal (ECM) fungi (e.g. Pinaceae) or both ECM and arbuscular mycorrhizal (AM) fungi (e.g. Eucalyptus), or sometimes as in Casuarina and Acacia with three coexisting symbionts (nitrogen fixing bacteria, ECM and AM fungi). In their new habitats, using highly efficient mycorrhizal fungi, controlled mycorrhization experiments have pointed out the importance of root symbionts in establishment and growth of exotic tree species such exotic pines or Australian acacias.

? Since the challenge in sylviculture and reforestation was to determine the best compromise between symbiotic compatibility and efficiency of both partners under local soil constraints, further researches have to be encouraged to elucidate the complexity of these tree symbioses in terms of diversity, interaction and effectiveness of their symbiotic partners for their better exploitation in reforestation programmes.