Second round of an interlaboratory comparison of SARS-CoV2 molecular detection assays used by 45 veterinary diagnostic laboratories in the United States

The COVID-19 pandemic presents a continued public health challenge. Veterinary diagnostic laboratories in the United States use RT-rtPCR for animal testing, and many laboratories are certified for testing human samples; hence, ensuring that laboratories have sensitive and specific SARS-CoV2 testing methods is a critical component of the pandemic response. In 2020, the FDA Veterinary Laboratory Investigation and Response Network (Vet-LIRN) led an interlaboratory comparison (ILC1) to help laboratories evaluate their existing RT-rtPCR methods for detecting SARS-CoV2. All participating laboratories were able to detect the viral RNA spiked in buffer and PrimeStore molecular transport medium (MTM). With ILC2, Vet-LIRN extended ILC1 by evaluating analytical sensitivity and specificity of the methods used by participating laboratories to detect 3 SARS-CoV2 variants (B.1; B.1.1.7 [Alpha]; B.1.351 [Beta]) at various copy levels. We analyzed 57 sets of results from 45 laboratories qualitatively and quantitatively according to the principles of ISO 16140-2:2016. More than 95% of analysts detected the SARS-CoV2 RNA in MTM at ≥500 copies for all 3 variants. In addition, for nucleocapsid markers N1 and N2, 81% and 92% of the analysts detected ≤20 copies in the assays, respectively. The analytical specificity of the evaluated methods was >99%. Participating laboratories were able to assess their current method performance, identify possible limitations, and recognize method strengths as part of a continuous learning environment to support the critical need for the reliable diagnosis of COVID-19 in potentially infected animals and humans.     

At-sea distribution of waved albatrosses and the Galápagos Marine Reserve

Albatross populations worldwide are threatened by incidental takes in longline fishery operations. The recent establishment of the Galápagos Marine Reserve (GMR) is relevant to the longline bycatch issue, as it prohibits industrial longlining in the vicinity of the major nesting site of waved albatrosses (Phoebastria irrorata). However, the legality of the fishing protections is being challenged, highlighting a need for data on use of the GMR by albatrosses. We used satellite tracking over a total of four breeding seasons to determine the distribution of waved albatrosses inside and outside the GMR, and thereby assess the degree of protection that GMR provisions offer to this species. During the incubation period, breeding adults made commuting trips from the nesting island (Isla Española) to the Peruvian upwelling zone, traveling north, east, and south after leaving the nest. During the brooding period, the distribution contracted markedly, and most satellite fixes were within the GMR. During the rearing period, breeders performed both long trips outside the GMR and short trips within. The southeastern portion of the GMR is used throughout the incubation, brooding, and early rearing periods by breeding waved albatrosses. Indirect information from non-breeding adults indicates that they are likely to use the waters of the GMR extensively.     

Reverse diel vertical migration: an escape from invertebrate predators

The marine copepod Pseudocalanus sp. exhibits an unusual reverse diel vertical migration in Dabob Bay, Washington, concurrently with a normal vertical migration by nocturnal invertebrate predators. Reduced spatial overlap with predators appears to decrease mortality rate of adult female Pseudocalanus. A life table analysis suggests that the demographic disadvantage associated with daily migration across a thermal gradient can be overcome if mortality is reduced by as little as 16 percent.     

Conservation of the jackass penguin (Spheniscus demersus (L.))

The jackass penguin Spheniscus demersus (L.) is confined to the coastal waters of southern Africa, and breeds on 18 islands predominantly within the region of the cold, nutrient rich Benguella current. Since the early 1900s the species' population has declined in numbers of unknown magnitude. The decline appears to be continuing, although the absence of reliable census data precludes an accurate measurement of the rate of change. The initial fall in numbers was undoubtedly due to severe disturbance of nesting birds and excessive commercial exploitation of eggs. The average annual egg crop for the period 1900-30 exceeded 450,000 eggs from Dassen Island alone. Egg collection has been suspended temporarily, but the species now appears to be threatened by oil pollution, and by competition with a pelagic shoal fish industry. Threats to breeding colonies are posed by harbour developments. These factors are discussed and evaluated. South African marine organisms are considered officially to be an economic resource and are heavily exploited. Legislation governing the control of this resource is the concern of the Ministry for Economic Affairs. There is no provision for any government body to investigate the status and biology of economically insignificant, but yet integral, components of the marine ecosystem. The major priority of conservations is to safeguard the jackass penguin population at its present level. This includes proclamation of several offshore islands and their surroundings as national nature reserves. We consider current efforts to rescue, clean and rehabilitate oiled seabirds as contributing little to conservation in real terms, even though the activity has an important humanitarian and educational function. Research priorities include a comprehensive census of the jackass penguin and other seabird populations in southern Africa; a study of mortality and recruitment, with particular attention to factors affecting the rates of these processes; a study of the dynamics of the penguin/prey interaction, with special reference to the possible effects of competition with the pelagic fishing industry; an evaluation of the degree of disturbance that nesting penguins can tolerate; an investigation into the temporal and spatial patterns of oil pollution incidents, oil slick occurrence and movement, and the development of methods of keeping birds away from oil slicks; and, lastly, an evaluation of the efficacy of rehabilitating oiled penguins as a contribution to maintaining or increasing the current jackass penguin population. The responsibility for these projects rests with the South African government.     

Adhesion of Staphylococcus aureus and Escherichia coli to bovine udder epithelial cells

An assay for the adhesion of tritiated thymidine-labelled Staphylococcus aureus and Escherichia coli to bovine mammary ductular epithelial cell lines was developed. The relative adhesion of 15 strains of S. aureus to these cell lines was examined. Four strains did not adhere and the remaining 11 adhered at variable levels. Adhesion to different cell lines was generally similar. Adhesion to freshly collected bovine mammary epithelial cells was significantly greater than that to cells maintained in tissue culture. The system described was demonstrated to be a suitable model for studying adhesion of mastitis-causing organisms to bovine mammary epithelial cells.     

Use of a laryngeal mask airway in rabbits during isoflurane anesthesia

The purpose of this study was to find out if an LMA (#1 LMA‐Classic) would provide a better airway than a face mask in spontaneously breathing anesthetized rabbits, and to test if it could be used for mechanically controlled ventilation. Sixteen rabbits (4.1 ± 0.8 kg, mean ± SD) were assigned randomly to three treatment groups; face mask with spontaneous ventilation (FM‐SV; n = 5), LMA with spontaneous ventilation (LMA‐SV; n = 5), and LMA with controlled ventilation (LMA‐CV; n = 6). Rabbits were anesthetized in dorsal recumbency using a circle circuit at constant ET isoflurane (2.3%, Datex airway gas monitor) and constant rectal temperature (38.85 °C) for 2 hours. PaCO₂, PaO₂, minute volume, tidal volume (Wright's respirometer), and Pe CO₂ were measured at 15 minute intervals. Two individuals in the FM‐SV group had PaCO₂ >100 mm Hg (>13.3 kPa). One rabbit in the FM‐SV had PaO₂ <80 mm Hg (<10.7 kPa). All FM‐SV rabbits showed signs of airway obstruction and two were withdrawn from the study at 45 and 90 minutes, respectively, because of cyanosis. Tidal volume could not be measured in the FM‐SV group. No signs of airway obstructions were observed in either of the LMA groups. Four rabbits in the LMA‐CV group developed gastric tympany, and one of these refluxed after 110 minutes. The significance of differences between the two spontaneously breathing groups and between the two LMA groups were measured using Wilcoxon's rank sum test (with significance assumed at p < 0.05). There were no statistical differences between FM‐SV and LMA‐SV in any variable tested. PaCO₂ and Pe ′CO₂ were less in the LMA‐CV group than in the LMA‐SV group, while PaO₂, tidal volume, and minute volume were all more. We conclude that biologically, the LMA provides a better airway than the face mask during spontaneous breathing and that it can be used for IPPV, but that gastric tympany is likely to occur during IPPV.