Carrier rate of the c.235G>C mutation in the bovine isoleucyl-tRNA synthetase (IARS) gene of Japanese Black cows at Kagoshima prefecture, Japan,and analysis of the metabolic profiling and reproductive performance of heterozygous cows

Bovine isoleucyl-tRNA synthetase (IARS) disorder, a major cause of weak calf syndrome, is caused by a homozygous missense (c.235G>C) mutation in the bovine IARS gene of Japanese Black (JB) cattle, which was identified in 2013. However, the extent to which the carrier rate has changed at Kagoshima prefecture, Japan, and whether the carrier status is associated with any clinical or reproductive problems, have yet to be ascertained. In this study, using a real-time polymerase chain reaction-based genotyping assay, we determined the carrier rate in a regional JB cow population at Kagoshima prefecture. Comparative analyses were performed on the metabolic profile test (MPT) results and reproductive performance data obtained for heterozygous carrier and homozygous wild-type cows. In 2009 and 2018, DNA samples were collected from 130 and 462 clinically healthy JB cows, respectively, in Kagoshima prefecture. MPT results and reproductive performance data were evaluated for 62 cows, comprising four heterozygous carriers and 58 wild-type cows. Genotyping revealed that the carrier rate was 6.9% in 2009 and 1.5% in 2018, the difference of which was statistically significant (P<0.005). There were no statistically significant differences between the carrier and wild-type cows with respect to either MPT results or reproductive performance, indicating that the carrier cows have necessary IARS activity to maintain minimal health and reproductive potential.     

Reduced tillage with residue retention improves soil labile carbon pools and carbon lability and management indices in a seven-year trial with wheat-mung bean-rice rotation

Soil total organic carbon (TOC) is a composite indicator of soil quality with implications for crop production and the regulation of soil ecosystem services. Research reports on the dynamics of TOC as a consequence of soil management practices in subtropical climatic conditions, where microbial carbon(C) loss is high, are very limited. The objective of our study was to evaluate the impact of seven years of continuous tillage and residue management on soil TOC dynamics (quantitative and qualitati...     

Muscle protein expression of pikeperches (Stizostedion lucioperca and S. volgense)

The purpose of the present study was to investigate the muscle protein expression in two pikeperches (Stizostedion lucioperca and S. volgense) through intra‐ and intermyomeric composition of white muscles. Using denaturing 10% sodium dodecylsulfate‐polyacrylamide gel electrophoresis, muscle protein expression was studied in relation to within‐ and between‐species morphological development, sex, maturity and age of pikeperches. Myosin, actin and troponin have a distinct role in the contraction and length tension of muscle fibers of these species. No obvious intramyomeric differences were found in the myosin heavy chain of both species. Myosin light chains (15–38 kDa) have different expression in different age groups. The muscle protein of the fingerling and adult S. lucioperca had high molecular weight (50 kDa) myosin in contrast to the other Percid species. The molecular weight of actins increased comparatively in low‐age‐group fish. ATP is stored in myosin and released to cause contraction when myosin comes in contact with actin of the experimental fish. Troponin regulates increasing concentration of light‐chain myosin in mature fish. Because troponin T has been implicated in the regulation of skeletal muscle kinetics, muscle contraction kinetics was predicted in different age groups. The muscle proteins of both sexes of these species have polymorphism in various age groups but have no difference in similar aged fish. No muscle protein dimorphism was found in these Percid species. The white muscle protein composition and contractile properties affect power production during fast, unsteady movement and swimming.     

Antibacterial compounds from the flowers of Alangium salviifolium

1-Methyl-1H-pyrimidine-2,4-dione and 3-O-beta-D-glucopyranosyl-(24beta)-ethylcholesta-5,22,25-triene, isolated from the flowers of Alangium salviifolium, showed remarkable antibacterial activities against a number of Gram-positive and Gram-negative bacterial species.     

Antimicrobial and cytotoxic constituents from the seeds of Annona squamosa

Annotemoyin-1, Annotemoyin-2, squamocin and cholesteryl glucopyranoside were isolated from the seeds of Annona squamosa. These compounds and plant extracts showed remarkable antimicrobial and cytotoxic activities.     

Biosurfactant-assisted phytoremediation of potentially toxic elements in soil: Green technology for meeting the United Nations Sustainable Development Goals

Biosurfactants are biomolecules produced by microorganisms, low in toxicity, biodegradable, and relatively easy to synthesize using renewable waste substrates. Biosurfactants are of great importance with a wide and versatile range of applications, including the bioremediation of contaminated sites. Plants may accumulate soil potentially toxic elements(PTEs), and the accumulation efficacy may be further enhanced by the biosurfactants produced by rhizospheric microorganisms. Occasionally, the growth of bacteria slows down in adverse conditions, such as highly contaminated soils with PTEs. In this context,the plant's phytoextraction capacity could be improved by the addition of metal-tolerant bacteria that produce biosurfactants. Several sources, categories,and bioavailability of PTEs in soil are reported in this article, with the focus on the cost-effective and sustainable soil remediation technologies, where biosurfactants are used as a remediation method. How rhizobacterial biosurfactants can improve PTE recovery capabilities of plants is discussed, and the molecular mechanisms in bacterial genomes that support the production of important biosurfactants are listed. The status and cost of commercial biosurfactant production in the international market are also presented.     

DISTRIBUTION OF INOSITOL PHOSPHATES, PHOSPHOLIPIDS, AND NUCLEIC ACIDS AND MINERALIZATION OF INOSITOL PHOSPHATES IN SOME BANGLADESH SOILS

Concentration of inositol phosphates, phospholipids, and RNA and its derivatives of ten Bangladesh soils varied between 17.5 and 150 ppm, 0.5 and 11.0 ppm, and 0.22 and 1.30 ppm respectively. Variation in inositol phosphates was related to total phosphate and organic phosphate contents. Variation in phospholipids was associated with total phosphate, organic phosphate, and organic matter contents whereas the variation in RNA and its derivatives was related to total phosphate contents of the soils. Maximum mineralization of inositol phosphates was obtained in the first 30 days either when incubated with lime or when submerged under water. A moderate rate was observed in the subsequent 30-day incubation periods. The mineralization was greater in soil which contained more organic matter and inositol phosphates. Mineralization also increased with pH. Liming enhanced mineralization as it induced conditions for the proliferation of phosphate transforming organisms.     

Seedbed Characteristics and Seeding Depth Effects on Emergence and Seedling Vigour of Upland Rice

Effects of seedbed condition and seeding depth on the emergence and seedling vigour of upland rice was studied. Regardless of aggregate size distribution, seeds sown at 2 cm depth gave the maximum emergence rate (80-90 %) which was reduced to 47 % for sowing at 5 cm depth. Seeding at 10 cm depth caused total failure in emergence. When planted at 2 cm depth, aggregate size produced considerable variation in the speed of emergence but caused no significant differences in final emergence count. For seeds sown at 5 cm depth, seedbed with aggregate size < 2 mm resulted in poor emergence (12 %) while with aggregates > 8 mm reduced emergence by 34 % compared with balanced proportion of larger, moderate and smaller aggregates. Neither the seedbed condition nor seeding depth caused significant variation in seedling height or seedling dry weight.     

Sources and Ecological Risks of Heavy Metals in Soils Under Different Land Uses in Bangladesh

Soil heavy metal pollution, influenced by both natural and anthropogenic factors, significantly reduces environmental quality. In this study, Cr, Ni, Cu, As, Cd, and Pb in eight different land-use soils from Patuakhali District in Bangladesh were assessed. Concentrations of Cr, Ni, Cu, As, Cd, and Pb in soils were 1-87, 5-271, 4-181, 0-80, 0.2-24.0, and 5-276 mg kg^-1, respectively, measured using an inductively coupled plasma-mass spectrometer. The enrichment factor, pollution load index (PLI), and contamination factor (C_fⁱ) of metal i were used to assess the ecological risk posed by metals in soils. The PLI ranged from 0.78 to 2.66, indicating baseline levels to progressive deterioration of soil due to metal contamination. However, C_fⁱ of Cd ranged from 1.8 to 12.0, which showed that the studied soils were strongly impacted by Cd. Considering the severity of the potential ecological risk of a single metal, the descending order was Cd > As > Pb > Cu > Ni > Cr. Soils under all land uses showed moderate to very high potential ecological risk.     

Neural Network Modeling of Physical Properties of Ground Wheat

Physical properties of ground materials from roller mills are affected by the characteristics of wheat and the operational parameters of the roller mill. Backpropagation neural networks were designed, trained, and tested for the prediction of three physical properties of ground wheat: geometric mean diameter (GMD), specific surface area increase (SSAI), and break release (BR). Eight independent variables were used as input data. Compared to conventional statistical models, the accuracy of prediction was improved substantially, as reflected by the significant reduction in root mean squared error (RMS), relative error (RE), and the increase in coefficient of determination R² (>0.98). The neural network models are, therefore, capable of predicting the physical properties of the ground wheat.