Floristic diversity, regeneration status, and vegetation structure of woodlands in Metema Area, Amhara National Regional State, Northwestern Ethiopia

We studied woodland vegetation in broad-leaved deciduous woodlands of Metema in northwestern Amhara regional state, Ethiopia Our objective was to describe plant species composition, diversity, regeneration status, and population structure by a selective approach with asystematic sampling design. A total of 74 quadrats (each for 25 m × 25 m,spaced at intervals of 150 200 m) were sampled along established transect lines following the homogeneity of the vegetation. Vegetation data including cover-abundance, height, diameter at breast height (DBH), and numbers of seedlings and saplings of woody species were analyzed using Excel spreadsheet, Shannon Weiner diversity index, and PAST version 1.62. A total of 87 vascular plant species of 74 genera and 36 families were recorded. The dominant family was Fabaceae represented by 16(18.39 %) species of 13 genera. Shannon Weiner diversity and evenness were 3.67 and 0.82, respectively, which showed that the area was endowed with rich floral diversity evenly distributed. The vegetation structure, as quantified by cumulative diameter class frequency distribution,plotted as an interrupted inverted-J-shape pattern with a sharp decreasein the 2nd diameter class. This indicated poor vegetation structure. The diameter classes frequency distributions of selected species plotted infour general patterns i.e., interrupted Inverted-J-shape, J-shape,Bell-shape and Irregular-shape. In conclusion, although the area showedhigh floral diversity and evenness, woody species including Sterculea setigera, Boswellia papyrifera, and Pterocarpus lucens showed lowest recruitment of seedlings and saplings.     

Relative importance of seed‐tuber and soilborne inoculum in causing black dot disease of potato

Controlled‐environment and field experiments were done to quantify the individual contribution of seed‐tuber and soilborne inoculum of Colletotrichum coccodes in causing black dot disease of potato tubers. Seed‐tuber and soilborne inocula of C. coccodes were quantified using an existing real‐time PCR assay and related to subsequent incidence and severity of disease. In four field trials, a controlled‐environment experiment and through the monitoring of 122 commercial crops, seed‐tuber inoculum was found to be relatively less important than soilborne inoculum in causing black dot, and the level of seed‐tuber inoculum did not significantly affect either the incidence or severity of disease or the percentage of progeny tubers deemed unmarketable. By contrast, soilborne inoculum had the potential to result in high levels of disease and the level of C. coccodes soil infestation (pg DNA g^?1 soil) was found to have a significant effect. At soil infestation levels below 100 pg DNA C. coccodes g^?1 soil, 7% of commercial crops had an incidence of black dot greater than 20%, increasing to 40% and 57% of crops at levels of 100–1000 pg g^?1 and >1000 pg g^?1 soil, respectively. These arbitrary threshold levels for soilborne inoculum related to disease risk are discussed. Interpretation of disease risk based on inoculum levels must, in the future, be informed by agronomic variables and potential control strategies.     

Plant community and ecological analysis of woodland vegetation in Metema Area, Amhara National Regional State, Northwestern Ethiopia

We studied woodland vegetation in broad-leaved deciduous woodlands of Metema in northwestern Amhara regional state,Ethiopia to determine plant community types and species distribution patterns and their relationships with environmental variables,including altitude,pH,cation exchange capacity,electrical conductivity(EC),and moisture.We used a selective approach with a systematic sampling design.A total of 74 quadrats,each 25m × 25m at intervals of 150 200 m were sampled along the established transect lines.For herbaceous vegetation and soil data collection,five subquadrats each 1m × 1m were established at the four corners and the center of each quadrat.Three community types were identified using TWINSPAN analysis.All three community types showed high diversity(Shannon-Weiner index),the highest in community type II at 3.55.The highest similarity coefficient was 0.49(49%) between community types II and III,reflecting 0.51(51%) dissimilarity in their species richness.The canonical correspondence ordination diagram revealed that the distribution pattern of community type I was explained by moisture while that of community types III and II was explained by EC and altitude and moisture,respectively.Altitude was the most statistically significant environmental variable,followed by moisture and EC in determining the total variation in species composition and distribution patterns while pH and cation exchange capacity were non significant.In conclusion,we recommend that any intervention should take into account these three discrete community types and their environmental settings to make the intervention more successful.     

Effect of soil inoculum level and environmental factors on potato powdery scab caused by Spongospora subterranea

The effects of soil inoculum level and three environmental factors (soil type, soil moisture regime and temperature) on the incidence and severity of powdery scab caused by Spongospora subterranea were investigated in potato plants grown under controlled environmental conditions. Symptoms of powdery scab on tubers were assessed visually, after which DNA was extracted from tuber peelings and quantified in a real-time polymerase chain reaction assay using primers and a TaqMan® probe specific to S. subterranea to establish tuber infection levels. Soil inoculum concentration of S. subterranea did not significantly affect the incidence and severity of either tuber infection or powdery scab symptoms at maturity. No significant differences in disease incidence and severity were found between sandy, loamy and clay soils, although the two lighter soils yielded more powdery scab than clay soil. Constant dampness of the soil resulted in significantly more disease than a fluctuating moisture regime. Infection and disease levels were high at all three temperatures tested (9, 12 and 17°C), but symptoms were most severe at 12°C. The percentage of plants with infected tubers did not increase after tuber initiation, although the amount of S. subterranea DNA detected in tubers and the severity of powdery scab symptoms increased in mature plants. Latent tuber infections were found to be common, especially under conditions suboptimal for disease development. This new information may be important for the prevention of powdery scab in potato-growing areas around the world.     

Assessing the resistance of potatoes to powdery scab (Spongospora subterranea (Wallr.) Lagerh.)

Summary The reaction of nine cultivars to infection bySpongospora subterranea (powdery scab) was studied in two successive years of trials in naturally infested field soil and in artificially-inoculated field soil contained in brick-sided beds. The incidence of infection was recorded on a 1–9 scale, with complete absence of the disease scoring 9. The correlation coefficient (r) between scores from bed and field was 0.84 (1985) and 0.81 (1986). The field test gave satisfactory discrimination between resistant and susceptible cultivars in only one year, but the bed test gave good results in both years and is suggested as a small-scale alternative to field trials for this disease.     

Spatial analysis of blackleg‐affected seed potato crops in Scotland

Potato blackleg, caused by Pectobacterium and Dickeya species, is one of the most significant bacterial diseases affecting potato production globally. Although it is generally accepted to be a seedborne disease, the processes underlying the spread of disease largely remain unknown. Spatial point pattern analysis was applied to blackleg occurrence in seed potato crops in Scotland during the period of 2010–2013 (approximately 8000 blackleg‐affected crops), to assess whether its distribution was random, regular or aggregated, and the spatial scales at which these patterns occurred. Blackleg‐affected crops derived from mother stocks with symptoms were omitted from the analyses in order to examine the statistical evidence for horizontal transmission of blackleg. The pair correlation function was used to test for global spatial autocorrelation, and results indicated significant (P < 0·05) clustering of incidence at a wide range of spatial scales. Strength of clustering (degree of aggregation) among blackleg‐affected crops was notably larger at spatial scales of 25 km or less. A hot‐ and coldspot analysis was performed to test for local spatial autocorrelation, and statistically significant clusters of high and low values of disease were found across the country. These analyses provide the first quantitative evidence of localized and large‐scale spatial clustering of potato blackleg. Understanding the mode(s) of inoculum dispersal will be important for developing new management strategies that minimize host–pathogen contacts in potato and numerous other crops affected by pathogenic Pectobacterium and Dickeya species.     

The effect of post‐harvest storage conditions on the development of black dot (Colletotrichum coccodes) on potato in crops grown for different durations

The effects of post‐harvest curing and storage temperature on severity of black dot, caused by Colletotrichum coccodes, were investigated for potato crops grown for different crop durations (days from 50% emergence to harvest) in soils that posed a low, medium and high risk of disease. In field trials over four growing seasons (2005–8), black dot severity at harvest increased with increasing crop duration, within the range 103–146 days from 50% emergence to harvest (P < 0.05). In field trials over three growing seasons (2006–8), black dot severity on tubers at harvest increased significantly with increasing soil inoculum in each year, within the range 43–4787 pg C. coccodes DNA/g soil (P < 0.05). Storage trials were conducted to measure the influence of accumulated post‐harvest temperature on black dot. In 2005, no difference in black dot severity was observed on tubers stored for 20 weeks at 2.5 and 3.5 °C. In 2006 (but not 2007), increasing the duration of curing after harvest from 4 to 14 days increased black dot severity on tubers from 8.9 to 11.2% (P < 0.01) in long duration crops (>131 days after 50% emergence) grown under high (>1000 pg C. coccodes DNA/g soil) soil inoculum. The number of days of curing did not affect disease severity for shorter duration crops grown at high soil inoculum, or on crops grown at medium or low (100–1000 and <100 pg C. coccodes DNA/g soil, respectively) soil inoculum concentrations. Soil inoculum and crop duration together provided a reasonable prediction of black dot severity at harvest and after a 20‐week storage period.     

Factors affecting the development and control of black dot on potato tubers

Field trials were carried out over a 4 year period (2004–2007) to determine the effect of agronomic factors, specifically cultivar resistance, irrigation, crop duration and chemical control (in‐furrow application of azoxystrobin), on black dot development on potato tubers grown in fields where soilborne inoculum of Colletotrichum coccodes was present. In 2004, 2005 and 2006, two field trials were performed each year and in 2007, 19 mini‐field trials were carried out across Scotland and England. Cultivar resistance was clearly demonstrated to be an effective method of reducing black dot disease severity on tubers (described here as the percentage of unmarketable tubers, i.e. those with symptoms covering a surface area of >10%). In the four field trials carried out in 2004 and 2005, in irrigated and fungicide‐untreated plots, 43·8% of tubers of cv. Maris Piper were unmarketable, compared with 17·0% of tubers of cv. Sante. Assessments of disease development on underground plant parts (stems, stolons and roots) revealed that cultivar resistance acted only at the tuber level, as disease symptoms on other parts were often high irrespective of published disease resistance ratings. Irrigation increased the severity of disease on tubers in two trials (England 2004 and 2006), but its effect was less significant when rainfall was high. Delaying harvest by 2 weeks increased disease severity in all six trials, whilst application of azoxystrobin consistently reduced black dot severity. There were significant interactions between factors. The results clearly show how black dot disease severity can be reduced through an integrated approach to disease management.