Free-living nematode community structure and distribution within vineyard soil aggregates under conventional and organic management practices

Soil biota play a crucial role in soil ecosystem stability, promoting organic matter decomposition and nutrient cycling. Compared to conventional farming,organic farming is known to improve soil properties such as aggregation. Despite the importance of soil microbial communities in soil biogeochemical processes, our knowledge of their dynamics is rudimentary, especially under different agricultural management practices. Here we studied the effects of vineyard management practices(conventional an...     

Environmental similarity is more important than distance in the community structuring processes of ammonia-oxidizing archaea in agricultural soils

Ammonia-oxidizing archaea(AOA) are important in converting ammonia into nitrate in soils. While many aspects of their community structure have been studied, the relative importance of stochastic versus deterministic processes has poorly been understood. We compared AOA communities across the North China Plain, targeting the amoA gene. A phylogenetic null modelling approach was used to calculate the beta nearest taxon index to quantify the influence of stochastic and deterministic processes. We f...     

Involvement of nitrogen in salt resistance of Atriplex portulacoides is supported by split‐root experiment data and exogenous application of N‐rich compounds

Using a split‐root system, we aimed to identify the limiting factors for the growth of the halophyte Atriplex portulacoides L. under extreme salinity (800 mM NaCl) conditions. One half of the root system was immersed in complete nutrient solution at 0 or 800 mM NaCl and the other half was immersed in NaCl‐free medium, containing all nutrients or deprived of potassium (K⁺) or calcium (Ca²⁺) or nitrogen (N). Data indicate that at high salinity levels A. portulacoides growth is limited by the restrictions imposed by NaCl on N uptake. Next, the alleviation of the adverse impact by salt stress (800 mM NaCl) on plant growth was investigated through urea (U) and/or thiourea (TU) external addition through foliar application. Whether separately or supplied together, both components mitigated the negative impact of salinity on the plant growth by significantly improving the photosynthetic activity parameters [CO₂ assimilation rate, stomatal conductance and maximum quantum efficiency of PSII photochemistry (F_v/F_m)], as well as shoot N concentration and the photosynthetic nitrogen‐use efficiency (PNUE). A concomitant increase of protein and free amino acid concentrations was also observed. As a whole, the present study highlights the significance of N in A. portulacoides response to high salinity and suggests that combined application of U and TU could promote the growth of this halophyte potentially useful for saline soil reclamation and revegetation purposes.     

Stochasticity dominates assembly processes of soil nematode metacommunities on three Asian mountains

Nematodes play an important role in ecosystems; however, very little is known about their assembly processes and the factors influencing them. We studied nematode communities in bulk soils from three Asian mountain ecosystems to determine the assembly processes of free-living nematode metacommunities and their driving factors. On each mountain, elevations span a range of climatic conditions with the potential to reveal assembly processes that predominate across multiple biomes. A phylogenetic nu...     

Enduring legacy of coal mining on the fungal community in a High Arctic soil after five decades

Mineral extraction is known to affect soil fungi in polar environments, but it is unknown how long these effects persist. Here, by amplifying the internal transcribed spacer regions of rRNA genes in soil fungi, we compared soil fungal community in intact natural tundra with that in a nearby former coal mining area, abandoned 52 years previously, on Svalbard in the High Arctic. Compared with those in intact tundra, soils in the former mining area were more acidic and had lower plant coverage. Despite of similar diversity in the two areas, the fungal community was dominated by Basidiomycota in the intact tundra, but by Ascomycota in the former mining area. Ectomycorrhizal genera formed a major part of the tundra community, but were notably less abundant in the mining area. The principal variation among samples was soil pH. Surprisingly, network connectivity analysis indicated that the fungal community in the former mining area had greater network connectivity than that in the tundra area. Overall, the ecosystem in the former mining area has made only limited recovery towards the natural tundra state even after more than five decades. It is unclear whether the recovery of the fungal community is limited more by the low primary productivity, slow migration of fungi and plants, or slow changes in soil parameters. Our findings emphasize the susceptibility of polar ecosystems to disturbance, given their particularly slow recovery back towards the natural state.     

Biodegradability Improvement of Sulfamethazine Solutions by Means of an electro-Fenton Process

The main objective of this study was to examine the effect of an electro-Fenton pretreatment on the biodegradability of sulfamethazine-polluted solutions. The aim of the pretreatment was only to degrade this molecule in order to increase the biodegradability of the effluent and therefore allow a subsequent biological treatment. Preliminary tests showed the absence of biodegradability of the target compound. The degradation of sulfamethazine by electro-Fenton process was then examined using a carbon felt cathode and a platinum anode in an electrochemical reactor containing 1?L of solution. The influence of some experimental parameters such as initial concentration, temperature and current intensity on the degradation by electro-Fenton step has been investigated. In addition, the biodegradability of the solution after electrochemical pretreatment was examined and showed a Biological Oxygen Demand (BOD₅) on Chemical Oxygen Demand (COD) ratio above the limit of biodegradability, namely 0.4, for several experimental conditions. The feasibility of coupling an electro-Fenton pretreatment with a biological degradation of by-products in order to mineralize polluted solutions of sulfamethazine was confirmed.     

Leaf photosynthesis,chlorophyll fluorescence and ion content of barley (Hordeum vulgare) in response to salinity

Eight barley genotypes contrasting in their salinity tolerance were assessed for their chlorophyll fluorescence, photosynthetic performance, lipid peroxidation level and ionic content. A pot experiment was conducted in Borj-Cedria (Tunisia), in a wire house with a glass roof to avoid rainfall. The assay consisted of three treatments (0, 100 and 200 mM NaCl) with eight barley genotypes following a completely randomized design. Each pot was considered as one replicate and nine replicates were used for each genotype and treatment. The salt-tolerant genotypes Kerkna and Tichedrett recorded the highest tolerance for photosynthesis and potassium accumulation, whereas the susceptible genotypes were mostly affected at severe salinity. Contrasting behavior was noted for fluorescence attributes, while PSII yield was unchanged reflecting good protection against photodamage. Photosynthetic performance, enhanced water use efficiency, maintained leaf K⁺ and oxidative defense remain the key components for tolerance mechanisms. Salt-tolerant barley could be suitable for management of salt-affected soils.     

Soil Metagenome of Tropical White Sand Heath Forests in Borneo:What Functional Traits Are Associated with an Extreme Environment Within the Tropical Rainforest?

White sand heath forests (WS) or kerangas, an unusual variant of tropical forests in Borneo, characterized by open scrubby vegetation, low productivity, and distinctive plant species composition and soil microbial community, are regarded as a stressful low-pH and/or nutrient environment. We investigated whether the functional soil metagenome also shows a predicted set of indicators of stressful conditions in WS. Based on stress-tolerant strategies exhibited by larger organisms, we hypothesized that genes for stress tolerance, dormancy, sporulation, and nutrient processing are more abundant in the soil microbiota of WS. We also hypothesized that there is less evidence of biotic interaction in white sand soils, with lower connectivity and fewer genes related to organismic interactions. In Brunei, we sampled soils from a WS and a normal primary dipterocarp forest, together with an inland heath, an intermediate forest type. Soil DNA was extracted, and shotgun sequencing was performed using Illumina HiSeq platform, with classification by the Metagenomics Rapid Annotation using Subsystem Technology (MG-RAST). The results, on one hand, supported our hypothesis (on greater abundance of dormancy, virulence, and sporulation-related genes). However, some aspects of our results showed no significant difference (specifically in stress tolerance, antibiotic resistance, viruses, and clustered regularly interspaced short palindrome repeats (CRISPRs)). It appears that in certain respects, the extreme white sand environment produces the predicted strategy of less biotic interaction, but exhibits high soil microbiota connectivity and functional diversity.     

Limits imposed by salt to the growth of the halophyte Sesuvium portulacastrum

The growth of the halophyte Sesuvium portulacastrum, commonly known as sea purslane, is impeded by NaCl only at high (600–1000 mM) concentration. Therefore, the goal of this investigation was to identify the mechanisms which set the limit of the salt resistance of S. portulacastrum. 21‐day‐old cuttings were grown for 45–50 d under split‐root conditions in which one half of the root system was immersed in complete nutrient solution supplemented with 800 mM NaCl, while the other half was immersed in a NaCl‐free medium, containing all nutrients or being deprived of potassium or calcium or nitrogen. Using this approach, we demonstrate that K⁺ and N uptake was impaired in roots exposed to NaCl. Concerning Ca²⁺, there was no indication of uptake inhibition by NaCl. However, restriction of K⁺ uptake by roots was compensated by an increase in the K⁺‐use efficiency, so that growth was not inhibited. Concerning N, our analysis shows that NO and/or NH uptake, but not their assimilation, was limited by salt treatment. Thus, we conclude that at high salinity levels, the growth of S. portulacastrum is limited by the restrictions imposed by NaCl on N uptake, perhaps in addition to inhibiting effects of excessive Na⁺ accumulation in shoot.