Effects of carbon source amendment on the anaerobic degradation of 1,1,1-trichloroethane (TCA) in a contaminated aquifer

We conducted a 10-month anaerobic microcosm test and a 15-month field test to investigate the effects of carbon source addition on the in-situ 1,1,1-trichloroethane (TCA) degradation in a polluted aquifer at an industrial site near Antwerp, Belgium. In the microcosms TCA decreased from 15000 μ g/L to 1500 μ g/L. 1,1-Dichloroethane (DCA) end-concentrations were about the same as the concentrations at the start of the tests (1500 μ g/L). 1,1-Dichloroethene (DCE) decreased from 1200 μ g/L to 800 μ g/L. Carbon source unamended and amended microcosms showed equal concentration trends. Neither chloroethane (CA) nor vinyl chloride (VC) were produced in the microcosms. In the field test TCA dropped from 15000 μ g/L to below 2000 μ g/L. Upstream, TCA levels remained elevated proving that the C-source injection had stimulated degradation. Sulphate reducing bacteria were stimulated; FeS was produced in the microcosms and aquifer. Dehalococcoides species were stimulated in some microcosms and in the HRC-amended aquifer. Neither sulphate reducers nor Dehalococcoidesspecies are however believed to be responsible for the observed TCA degradation. The carbon source injection however did yield environmental conditions that increased TCA degradation.     

Molecular Monitoring of SRB Community Structure and Dynamics in Batch Experiments to Examine the Applicability of in situ Precipitation of Heavy Metals for Groundwater Remediation (15 pp)

Background, Aims and Scope   Sulfate-reducing bacteria (SRB) are known for their capacity to reduce and precipitate heavy metals (HM) as metal sulfides, offering the opportunity to create an in situ reactive zone for the treatment of heavy metal-contaminated groundwater, a process called in situ metal precipitation (ISMP). The applicability of the ISMP technology first has to be investigated at a laboratory scale before going into an on site application. The evaluation and optimization of the ISMP process is facilitated when physical/chemical analysis techniques are combined with molecular tools that specifically monitor the abundance, diversity and dynamics of the indigenous sulfate reducing microbial community. In this study, batch experiments were conducted in order to investigate the feasibility of ISMP as a groundwater remediation strategy for an industrial site contaminated with elevated levels of Zn, Cd, Co and Ni. Methods   The potential of different types of carbon source/ electron donor (lactate, acetate, methanol, ethanol, Hydrogen Release Compound?, molasses) to stimulate the sulfate reduction and metal precipitation activity of the naturally present (or indigenous) SRB community was explored. In addition, the effect of amending vitamin B12 and yeast extract was evaluated. The ISMP process was monitored by combining analytical analyzes of process parameters (SO42-concentration, heavy metal concentrations, pH, Eh) with molecular tools such as SRB subgroup and genus specific PCR, denaturing gradient gel electrophoresis (DGGE), and phylogenetic analysis of clone sequences, based on either the 16S rRNA or the dsr (dissimilatory sulfite reductase) gene. Results and Discussion   The efficiency of different carbon-sources to stimulate the ISMP process followed the order HRC 〉 molasses 〉 methanol 〉 lactate 〉 ethanol 〉 acetate. Within 10 weeks, the highest sulfate and metal removal efficiencies ranged from 85% to 99%. Addition of yeast extract boosted the ISMP process, whereas vitamin B12 negligibly affected SRB activity. Analysis of the sulfate reducing population by SRB subgroup and genus specific PCR demonstrated that members of the genus Desulfosporosinus dominated in all batch tests, while 16S rDNA DGGE profiles additionally revealed the presence in the microbial communities of non-sulfate reducing bacteria within the family Clostridium and the -proteobacteria. The dsrB-based DGGE profiles allowed us to assess the diversity and dynamics of the sulfate reducing community and added to a better understanding of the effects of different batch conditions on the ISMP process. Remarkably, all dsrB sequences affiliated with the dsrB gene sequence cluster found in Desulfotomaculum, which received their xenologous dsrB gene from the -proteobacteria. Conclusions   The batch experiments, which aimed at stimulating the activities of the indigenous SRB communities, demonstrated that these communities were present and that their activities could be used to obtain efficient in situ precipitation of the contaminating heavy metals. This opens the possibility to test this concept in the future as an on site demonstration as part of the groundwater strategy for the heavy metal contaminated site. Although batch setups are suitable for preliminary feasibility studies for ISMP, they do not reflect the in situ situation where sulfate and heavy metal and metalloid polluted groundwater are supplied continuously. A sulfate reducing strain JG32A was isolated from whose 16S rRNA gene affiliated with the genus Desulfosporosinus, while its dsrB gene sequence clustered with Desulfotomaculum dsrB gene sequences, which received their xenologous dsr genes from -proteobacteria. Therefore we hypothesize that the batch experiments enrich members of the Desulfosporosinus genus that possess a non-orthologous dsrB gene. Recommendation and Perspective   The next step towards an on site pilot test for ISMP will be the setup of a series of column experiments, with process conditions that are selected based on the above mentioned results. This will allow to define optimal ISMP process conditions and to test its long-term efficacy and sustainability before going into an on site bioremediation application. By applying the described molecular tools together with physical-chemical analyzes, it can be investigated whether the same SRB community is enriched and which type of C-source is most effective in promoting and sustaining its growth and sulfate-reduction activity.     

Leaf quality of selected hedgerow species at two canopy ages in the derived savanna zone of West Africa

Prunings in hedgerow intercropping systems are a potential source of organic matter and their quality is an important characteristic driving decomposition and nutrient release. To determine the potential range of residue characteristics and the impact of canopy age on those, selected characteristics of Leucaena leucocephala, Gliricidia sepium, and Senna siamea hedgerow leaf residues were determined for young (5–10 weeks) and old (39–47 weeks) hedgerow canopies in six sites, representative in terms of soil for the derived savanna zone of West-Africa. The N content of the Leucaena and Senna residues decreased with age (from 4.8 to 3.9% and from 4.1 to 3.0%, respectively, while the N content of the Gliricidia residues remained constant (3.9%). The P content of all species decreased with age (from 0.30 to 0.20%, on average). The lignin content of the Leucaena residues increased, and their polyphenol content decreased with age, while for the Senna residues only an increase in polyphenol content with canopy age was evident. Neither the lignin nor the polyphenol content of the Gliricidia leaf residues was markedly affected by canopy age. For all species, the P and ADF content were positively correlated with the ash and lignin content, respectively. The N content of the Leucaena and Senna residues was positively correlated with their P content while the lignin content of the same species was negatively correlated with the polyphenol content. Because of the low variation in certain residue characteristics between sites, the presented data and equations could potentially be used to reasonably estimate those characteristics if no other information is available. For other characteristics, such as polyphenol contents, measurements are preferable in view of the relatively high variation encountered.This revised version was published online in November 2005 with corrections to the Cover Date.     

The application of molecular tools to follow up bioremediation

Journal of Soils and Sediments -     

Phosphorus use efficiency of improved faba bean (Vicia faba) varieties in low‐input agro‐ecosystems

The use of phosphorus (P)‐efficient legumes is a prerequisite for sustainable intensification of low‐input agro‐ecosystems. A study was undertaken in a farmer's field in the tropical highlands of Ethiopia to assess the agronomic performance, P acquisition efficiency (PAE), and P utilization efficiency (PUE) of six improved faba bean varieties (Vicia faba L. var. CS‐20DK, Degaga, Gebelcho, Moti, Obse, Walki) without and with P application. Varieties showed significant variations in PUE, but P application had no significant effect on PUE. Variety Moti demonstrated highest PUE of 272 kg grain kg^?1 P, which was 1.6‐fold higher than the lowest PUE (164 kg grain kg^?1 P) of Gebelcho. PUE was significantly and positively correlated with grain yield (r = 0.542) and negatively correlated with shoot PAE (r = –0.541), indicating that PUE is important for grain yield. The results demonstrate that variations in grain and biomass yield of faba beans were largely due to differences in PUE and not due to PAE. Therefore, we argue that genetic resources of faba bean varieties showing optimal agronomic performance and high PUE in low‐input agro‐ecosystems should be better explored. Introduction of such varieties in low‐input cereal‐based cropping systems could improve and enhance P use efficiency at the system level.     

Clinical and Electrophysiological Characterization of Myokymia and Neuromyotonia in Jack Russell Terriers

Background: Generalized myokymia and neuromyotonia (M/NM) in Jack Russell Terriers (JRTs) is related to peripheral nerve hyperexcitability syndrome in humans, a symptom complex resulting from diverse etiologies. Objective: Clinical and electrodiagnostic evaluation is used to narrow the list of possible etiological diagnoses in JRTs with M/NM. Animals: Nine healthy JRTs and 8 affected JRTs. Methods: A prospective study was conducted comparing clinical and electrophysiological characteristics in 8 JRTs affected by M/NM with 9 healthy JRT controls. Results: All affected dogs except 1 had clinical signs typical of hereditary ataxia (HA). In 6 dogs, neuromyotonic discharges were recorded during electromyogram. Motor nerve conduction studies showed an axonal neuropathy in only 1 affected dog. Compared with controls, brainstem auditory‐evoked potentials (BAEP) showed prolonged latencies (P < .05) accompanied by the disappearance of wave components in 3 dogs. Onset latencies of tibial sensory‐evoked potentials (SEP) recorded at the lumbar intervertebral level were delayed in the affected group (P < .001). The BAEP and SEP results of the only neuromyotonic dog without ataxia were normal. Conclusions and Clinical Importance: The BAEP and spinal SEP abnormalities observed in JRTs with M/NM were associated with the presence of HA. Therefore, these electrophysiological findings presumably arise from the neurodegenerative changes characterizing HA and do not directly elucidate the pathogenesis of M/NM. An underlying neuronal ion channel dysfunction is thought to be the cause of M/NM in JRTs.     

The use of visible and near-infrared reflectance measurements for identifying the source of suspended sediment in rivers and comparison with geochemical fingerprinting

Purpose

Visible and near-infrared (Vis-NIR) reflectance measurements may be an alternative technique to identify suspended sediment sources in streams of headwater catchments. In this study, we examined if Vis-NIR reflectance measurements are capable of estimating sediment source contributions to sediment yield and compared this technique with a more conventional (i.e. geochemical) technique.

Materials and methods

Two headwater catchments in Ethiopia, Unta (2,052 ha) and Desera (1,657 ha), were analysed with the same techniques in order to find similarities and differences in the results obtained. The first technique used Vis-NIR spectral analysis as a fingerprint, using a partial least squares regression model. The second technique was a quantitative composite fingerprinting technique using geochemical analysis of source materials and suspended sediment samples. As a comparison, the partial least squares model was also used on the geochemical data. In August and September 2009, 30 soil samples of three different land uses (landslides, croplands, and grazing lands) and 21 suspended sediment samples at the catchment outlet were collected. Source samples were sieved to <63 μm. Geochemical analyses consisted of total element concentrations, percentage carbon, percentage nitrogen, and atom percentage ¹⁵N and δ¹³C. Reflectance measurements were taken on dried source samples with a spectrometer.

Results and discussion

Neither technique was able to predict the contributions of the three land use types; they could only distinguish between landslide and topsoil material. The agreement between the results of both techniques was significant for the Unta catchment (R ²?=?0.80) but not for the Desera catchment (R ²?=?0.39). The uncertainty of the technique using Vis-NIR reflectance measurements was slightly higher than with the geochemical approach. Both techniques revealed that topsoil erosion played an important role during storm runoff discharges. Using the partial least squares model for the geochemical data revealed that uncertainty can differ greatly when using other statistical techniques.

Conclusions

The quantitative composite fingerprinting technique using spectral signatures from both source and suspended sediment samples was able to quantify the contribution of two source materials (landslides and topsoil). It provided a faster and more cost effective alternative to the conventional geochemical procedure.     

Long-term soil organic carbon dynamics in a subhumid tropical climate: C data in mixed C3/C4 cropping and modeling with ROTHC

Scanty information on long-term soil organic carbon (SOC) dynamics hampers validation of SOC models in the tropics. We observed SOC content changes in a 16-year continuously cropped agroforestry experiment in Ibadan, south-western Nigeria. SOC levels declined in all treatments. The decline was most pronounced in the no-tree control treatments with continuous maize and cowpea cropping, where SOC levels dropped from the initial 15.4 to 7.3-8.0 Mg C ha⁻¹ in the 0-12 cm topsoil in 16 years. In the two continuously cropped alley cropping (AC) systems, one with Leucaena leucocephala and one with Senna siamea trees, SOC levels dropped to 10.7-13.2 Mg C ha⁻¹. Compared to the no-tree control treatments, an annual application of an additional 8.5 Mg ha⁻¹ (dry matter) of plant residues, mainly tree prunings, led to an extra 3.5 Mg C ha⁻¹ (∼0.2% C) in the 0-12 cm top soil after 11 years, and 4.1 Mg C ha⁻¹ after 16 years. The addition of NPK fertilizer had little effect on the quantities of above-ground plant residues returned to the soil, and there was no evidence that the fertilizer affected the rate of SOC decomposition. The fact that both C₃ and C₄ plants returned organic matter to the soil in all cropping systems, but in contrasting proportions, led to clear contrasts in the ¹³C abundance in the SOC. This ¹³C information, together with the measured SOC contents, was used to test the ROTHC model. Decomposition was very fast, illustrated by the fact that we had to double all decomposition rate constants in the model in order to simulate the measured contrasts in SOC contents and δ¹³C between the AC treatments and the no-tree controls. We hypothesized (1) that the pruning materials from the legume trees and/or the extra rhizodeposition from the tree roots in the AC treatments accelerated the decomposition of the SOC present at the start of the experiment (true C-priming), and/or (2) that the physical protection of microbial biomass and metabolites by the clay fraction on this site, having a sandy top soil in which clay minerals are mainly of the 1:1 type, is lower than assumed by the model.     

Alley cropping in the moist savanna of West-Africa: III. Soil organic matter fractionation and soil productivity

In cropping systems with limited amounts of external inputs, the soil organic matter pool (SOM) may contribute significantly to plant nutrition. The impact of organic inputs on total SOM and particulate organic matter (POM) N contents as affected by soil type and the relationships between sources of N and maize N uptake were assessed for a set of alley cropping trials in the West- African moist savanna. The trials were established in Niaouli (Bénin Republic), in Glidji, Amoutchou, and Sarakawa (Togo), and in Bouaké and Ferkessédougou (Côte d‘ Ivoire). The total soil N content, averaged over all treatments and years, varied between 324 and 1140 mg N kg?1 soil. The POM-N content varied between 50 and 160 mg N kg?1 soil. The average proportion of soil N belonging to the POM pool ranged between 9% and 29%. This was significantly related to the annual N inputs from maize stover and prunings, when averaged over the different alley cropping treatments. The trial ‘age‘ also appeared to be related to the impact of the different treatments on the POM-N content. The Ferkessédougou soil contained a relatively higher proportion of total soil N in the POM pool because of its relatively high silt and clay content, compared to the other sites. The relative change in POM-N content between 1996 and the initial sampling was about twice the relative change in total soil N content. This suggests that N incorporated in the POM is relatively labile, compared to N incorporated in the other SOM fractions. Maize N uptake was related to the amount of add pruning-N (partial r2 of 27%), the rainfall during the growing season (partial r2 of 17%), the POM-N content (partial r2 of 14%), and to a lesser degree to the POM N concentration (partial r2 of 5%), the fertilizer N addition rate (partial r2 of 3%), and the silt and clay content of the soil (partial r2 of 3%). The POM-N content was shown to be influenced by organic matter additions and soil characteristics and to contribute significantly to maize N supply. This pool may be an important indicator for the soil fertility status of savanna soils.