Small-scale distribution of extracellular enzymes, fungal, and bacterial biomass in Quercus petraea forest topsoil

The small-scale distribution of activities of extracellular laccase, Mn-peroxidase, endoglucanase, cellobiohydrolase, β-glucosidase, endoxylanase, β-xylosidase, chitinase, and acid phosphatase were studied in the litter (L) and organic (H) horizons of Quercus petraea forest soil and related to the distribution of microbial biomass. Geostatistical analysis showed that the spatial autocorrelation of the enzyme activities and soil microbial biomass measured as phospholipid fatty acids (PLFA) and ergosterol content occurred at similar scales, typically in the range of tens of centimeters. The size of the spatial structures differed between the L and H horizons; for most of the studied enzymatic processes, litter exhibited a higher spatial variability (smaller autocorrelation distances). The distribution of several enzymes, including laccase, Mn-peroxidase, and some hydrolases, reflected the distribution of fungal biomass. Polysaccharide hydrolases exhibited similar spatial distribution patterns in the L horizon, and their activity coincided with a high fungal/bacterial biomass ratio.     

Ligninolytic fungi in bioremediation: extracellular enzyme production and degradation rate

Ligninolytic fungi can be used for remediation of pollutants in water and soil. Extracellular peroxidases and laccases have been shown to oxidize recalcitrant compounds in vitro but the likely significance of individual enzyme levels in vivo remains unclear. This study documents the amounts and activities of Mn-dependent peroxidase (MnP), lignin peroxidase and laccase (LAC) in various species of ligninolytic fungi grown in liquid medium and soil and their effect on degradation of polycyclic aromatic hydrocarbons (anthracene and pyrene), a polychlorinated biphenyl mixture (Delor 106) and a number of synthetic dyes. Stationary cultures of a highly degradative strain Irpex lacteus exhibited 380-fold and 2-fold increase in production of MnP and LAC, respectively, compared to submerged cultures. Addition of Tween 80 to the submerged culture increased MnP levels 260-fold. High levels of MnP correlated with efficient decolorization of Reactive Orange 16 azo dye but not of Remazol Brilliant Blue R anthraquinone dye. Degradation of anthracene and pyrene in spiked soil by straw-grown explorative mycelium of Phanerochaete chrysosporium, Trametes versicolor and Pleurotus ostreatus showed the importance of MnP and LAC levels secreted into the soil. The importance of high fungal enzyme levels for efficient degradation of recalcitrant compounds was better demonstrated in liquid media compared to the same strains growing in soil.     

Organic matter decomposition and carbon content in soil fractions as affected by a gradient of labile carbon input to a temperate forest soil

Labile carbon (C) input to soils is expected to affect soil organic matter (SOM) decomposition and soil organic C (SOC) stocks in temperate coniferous forests. We hypothesized that the SOM...     

Impact of plant species and atmospheric CO2 concentration on rhizodeposition and soil microbial activity and community composition

Both plant species and CO₂ concentration can potentially affect rhizodeposition and consequently soil microbial activity and community composition. However, the effect differs based on plant developmental stage. We focused on the effect of three plant species (forbs, grasses, and N₂‐fixers) at an early stage of development on root C deposition and fate, soil organic matter (SOM) mineralization and soil microbial community composition at ambient (aCO₂) and elevated (eCO₂) CO₂ levels. Plants were grown from seed, under continuous ¹³C‐labelling atmospheres (400 and 800 µmol mol^?1 CO₂), in grassland soil for three weeks. At the end of the growth period, soil respiration, dissolved organic C (DOC) and phospholipid fatty acid (PLFA) profiles were quantified and isotopically partitioned into root‐ and soil‐derived components. Root‐derived DOC (0.53 ± 0.34 and 0.26 ± 0.29 µg mL soil solution^?1) and soil‐derived CO₂ (6.14 ± 0.55 and 5.04 ± 0.44 µg CO₂‐C h^?1) were on average two times and 22% higher at eCO₂ than at aCO₂, respectively. Plant species differed in exudate production at aCO₂ (0.11 ± 0.11, 0.10 ± 0.18, and 0.58 ± 0.58 µg mL soil solution^?1 for Plantago, Festuca, and Lotus, respectively) but not at eCO₂ (0.20 ± 0.28, 0.66 ± 0.32, and 0.75 ± 0.15 µg mL soil solution^?1 for Plantago, Festuca, and Lotus, respectively). However, no differences among plant species or CO₂ levels were apparent when DOC was expressed per gram of roots. Relative abundance of PLFAs did not differ between the two CO₂ levels. A higher abundance of actinobacteria and G‐positive bacteria occurred in unplanted (8.07 ± 0.48 and 24.36 ± 1.18 mol%) and Festuca‐affected (7.63 ± 0.31 and 23.62 ± 0.69 mol%) soil than in Plantago‐ (7.04 ± 0.36 and 23.41 ± 1.13 mol%) and Lotus‐affected (7.24 ± 0.17 and 23.13 ± 0.52 mol%) soil. In conclusion, the differences in root exudate production and soil respiration are mainly caused by differences in root biomass at an early stage of development. However, plant species evidently produce root exudates of varying quality affecting associated microbial community composition.     

Enzyme activities and microbial biomass in topsoil layer during spontaneous succession in spoil heaps after brown coal mining

Changes in the activity of extracellular enzymes (cellobiohydrolase, β-glucosidase, β-xylosidase, chitinase, arylsulfatase and phosphatases) and the changes in microbial community and abiotic properties in the topsoil layer, as well as soil abiotic properties during primary succession were investigated in a brown coal mine deposit area near Sokolov, Czech Republic. The study considered the chronosequence of 4 post-mining plots, 4-, 12-, 21- and 45-year old. The 4-year old site had no vegetation cover. Herbs and grasses (mainly Calamagrostis epigeios) were present on the 12-year old plot, shrubs (Salix caprea) occurred on the 21-year old plot and tree cover (Betula spp. and Populus tremuloides) developed on the 45-year old plot. Soil pH gradually decreased with site age, while the content of P, K, C and N peaked in the 21-year old site, being significantly lower in the 45-year old site and much lower in the 4- and 12-year old sites. Phosphatase activities were strongly affected by seasonality while the activities of all the other enzymes measured were more influenced by the effects of succession age and soil layer than by seasonality. Succession age was also the most important factor affecting the total and bacterial PLFA contents, followed by the effects of soil layer and season while for the fungal biomass content-related properties (ergosterol, fungal PLFA and the fungal/bacterial PLFA ratio), season was the most important. Activities of individual enzymes in the topsoil (0–5 cm depth) were significantly affected by both site age and season. Cellobiohydrolase and β-xylosidase were more affected by site age while chitinase and phosphatases were more affected by season. Enzyme activity increased with succession age. Comparison of the effect of site and season on enzyme activity showed that season played a principal role in the enzyme activity of the entire 0–5 cm component of topsoil, as well the soil layers when evaluated separately.     

Litter decomposition along a primary post-mining chronosequence

Biology and Fertility of Soils - The aim of this study was to describe the decomposition of litter along a successive series of sites developed at a post-mining overburden deposit over 12, 21 and...     

Humus accumulation, humification, and humic acid composition in soils of two post-mining chronosequences after coal mining

Purpose

To assess how the rates of humus formation and humification are affected by land use and age of ecosystems, this study investigated soil development in two post-mining chronosequences (spoil heaps formed from open-cast coal mining near Sokolov, Czech Republic). The following characteristics were measured: content, composition, and properties of humic acids; organic carbon (C) and total nitrogen (N) contents; pH; and amorphous iron content.

Materials and methods

Two chronosequences were studied. One consisted of unreclaimed spontaneously revegetated spoils (3, 12, 20, and 40 years old). The other consisted of heaps that were reclaimed by planting alder in graded heaps (7, 15, 20, 30, and 40 years old). Humus and iron contents as well as pH were determined, and humic acids were extracted for detailed chemical analyses (C, H, N, ¹³C-NMR, and pyrolysis mass-spectrometry).

Results and discussion

C and N accumulated faster in the reclaimed sites than in the unreclaimed sites; organic matter accumulation results in the decrease of pH in all soils and in spontaneous sites also increase of amorphous iron content. Humic acids (HA) and fulvic acids (FA) increased with the site age in both chronosequences. The CHA/CFA was higher in the reclaimed soils than in the unreclaimed soils, and the CHA/CFA ratio increased with age in the unreclaimed soils. Humic acid aromaticity was higher in the reclaimed site than in the unreclaimed sites but increased with the age of unreclaimed sites. H and O content decreased with age of reclaimed soils. Humification led to an increase in HA caloricity in the reclaimed sites but not in unreclaimed sites because of the influence of residual wax-type substances in the unreclaimed sites. Degree of HA oxidation (ω) for the reclaimed plots was similar to that in typical zonal soils but was highly variable in unreclaimed soils.

Conclusions

Relative to spontaneous revegetation in the unreclaimed sites, reclamation increased the rates of humus accumulation, humification, and humus acid transformations. The differences between reclaimed and unreclaimed sites, however, decreased with site age and were very small in 40-year-old sites. These differences correspond to the rapid colonization of the reclaimed sites and the slow colonization of the unreclaimed sites by soil biota.     

Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil

Extracellular lignocellulose-degrading enzymes are responsible for the transformation of organic matter in hardwood forest soils. The spatial variability on a 12 × 12 m plot and vertical distribution (0–8 cm) of the ligninolytic enzymes laccase and Mn-peroxidase, the polysaccharide-specific hydrolytic enzymes endoglucanase, endoxylanase, cellobiohydrolase, 1,4-β-glucosidase, 1,4-β-xylosidase and 1,4-β-N-acetylglucosaminidase and the phosphorus-mineralizing acid phosphatase were studied in a Quercus petraea forest soil profile. Activities of all tested enzymes exhibited high spatial variability in the L and H horizons. Acid phosphatase and 1,4-β-N-acetylglucosaminidase exhibited low variability in both horizons, while the variability of Mn-peroxidase activity in the L horizon, and endoxylanase and cellobiohydrolase activities in the H horizon were very high. The L horizon contained 4× more microbial biomass (based on PLFA) and 7× fungal biomass (based on ergosterol content) than the H horizon. The L horizon also contained relatively more fungi-specific and less actinomycete-specific PLFA. There were no significant correlations between enzyme activities and total microbial biomass. In the L horizon cellulose and hemicellulose-degrading enzymes correlated with each other and also with 1,4-β-N-acetylglucosaminidase and acid phosphatase activities. Laccase, Mn-peroxidase and acid phosphatase activities correlated in the H horizon. The soil profile showed a gradient of pH, organic carbon and humic compound content, microbial biomass and enzyme activities, all decreasing with soil depth. Ligninolytic enzymes showed preferential localization in the upper part of the H horizon. Differences in enzyme activities were accompanied by differences in the microbial community composition where the relative amount of fungal biomass decreased and actinomycete biomass increased with soil depth. The results also showed that the vertical gradients occur at a small scale: the upper and lower parts of the H horizon only 1 cm apart were significantly different with respect to seven out of nine activities, microbial biomass content and community composition.