Xanthorhodopsin: a proton pump with a light-harvesting carotenoid antenna

Energy transfer from light-harvesting carotenoids to chlorophyll is common in photosynthesis, but such antenna pigments have not been observed in retinal-based ion pumps and photoreceptors. Here we describe xanthorhodopsin, a proton-pumping retinal protein/carotenoid complex in the eubacterium Salinibacter ruber. The wavelength dependence of the rate of pumping and difference absorption spectra measured under a variety of conditions indicate that this protein contains two chromophores, retinal and the carotenoid salinixanthin, in a molar ratio of about 1:1. The two chromophores interact strongly, and light energy absorbed by the carotenoid is transferred to the retinal with a quantum efficiency of approximately 40%. The antenna carotenoid extends the wavelength range of the collection of light for uphill transmembrane proton transport.     

Effects of tracked vehicles on the morphological and physical properties of tundra soils

The agricultural lands of typic tundra of the Yamal Peninsula in Russia are pastures for reindeer (Rangifer tarandus sibiricus Murr.) herds. Currently, degradation of tundra soil cover is mainly caused by mechanical impacts of tracked vehicles used in construction operations. The objective of this study was to evaluate changes in morphological, micro-structural, and physical properties of Cryozems and Cryogenic peaty soils affected by these tracked vehicles. Soil samples were taken from the surface and underlying horizons before and 5 years after four and 100 passes of tracked vehicles. Surface horizons (0–10 cm) of the undisturbed Cryozems and Cryogenic peaty soils were organogenic. Passage of tracked vehicles caused mixing of these horizons with lower sandy loam and loam mineral horizons. Properties of the organomineral horizons formed in this way differed essentially from those of the surface horizons of the undisturbed soils. Microaggregates were completely disturbed, even after only four passes of tracked vehicles. Large inter-aggregate pores disappeared and thin pores or cracks formed as a result of vehicle-induced mechanical impacts. Humification of plant residues was observed to be faster in the compacted organomineral horizons of disturbed soils compared with undisturbed ones. The organic substances formed in the compacted organomineral horizons readily moved downward within the soil profile or were lost during runoff events. High correlation coefficients of organic carbon content with both specific surface area and water retention showed that the above-mentioned organic substances were hydrophilic. Specific surface area and water retention of the disturbed soils rose with increasing organic carbon content. The results obtained in this study demonstrated a high susceptibility of Cryozems and Cryogenic peaty soils to mechanical impacts.     

Biochar and biochar with N fertilizer as a potential tool for improving soil sorption of nutrients

Purpose

Biochar usually has a large specific surface area, and due to this, it increases the sorption capacity of the soil where it was applied. The objectives of this study were to (i) quantify the effects of biochar and biochar in combination with N fertilizer on the soil sorption parameters and (ii) quantify the effects of soil organic matter on the sorption parameters after application of biochar with and without N fertilizer.

Materials and methods

The experiment was established on Haplic Luvisol at the locality of Dolná Malanta (Slovakia) in 2014. The soil samples were collected once a month from the depth 0–0.2 m during 2014 to 2016. The field experiment included three rates of biochar application (B0?=?no biochar, B10?=?biochar at the rate of 10 t ha^?1, B20?=?biochar at the rate of 20 t ha^?1) and three levels of N fertilization (N0?=?no nitrogen, N40?=?nitrogen at the rate of 40 kg ha^?1, N80?=?nitrogen at the rate of 80 kg ha^?1).

Results and discussion

Overall, the decrease of the average values of hydrolytic acidity due to biochar and biochar combined with N fertilization resulted on average in an increase of sum of basic cation (SBC), cation exchange capacity (CEC), and sorption capacity of soil organic matter (CEC_SOM) in all treatments. However, this effect was the most intensive in B10N40. Despite the fact that the average values of sorption parameters improved, its dynamics during the investigated period were different. A significant decrease in CEC was observed from 2014 to 2016 in all treatments, except B0N0 and B10N0. A stable trend in CEC_SOM was observed only in B10N40. Humic substances and humic acids had a statistically significant positive effect on the SBC, CEC, and CEC_SOM only in B20N0 treatment. Negative correlations between the above mentioned parameters were observed in B10N80 treatment.

Conclusions

We conclude that the application of biochar and biochar combined with N fertilization had a positive influence on sorption parameters. However, its effects on SBC, CEC, and CEC_SOM decreased over time after its application.

     

Water stability of soil aggregates and their ability to sequester carbon in soils of vineyards in Slovakia

Soil water-stable aggregation is an important process for carbon sequestration and is a key factor controlling soil sustainability and resilience; therefore, the objectives of the present study were to (1) evaluate the differences in soil organic matter state, its specific and labile fractions and their importance in the formation of water-stable aggregates in vineyard soils differing in their genesis and texture under different soil management (vineyard rows – tilled and grassed in-between strips), and (2) estimate the ability of the vineyard soils to sequester soil organic carbon (SOC) into water-stable macro-aggregates (WSA_ma). The results showed that the WSA_ma content of the soils ranged from 47% to 97%. Soils with grasses had a higher SOC and labile carbon (C_L) contents than the bulk soil and, as a result, the higher total WSA_ma content. Soils ranged in a decreasing order in their ability to sequester SOC and C_L from bulk soil to WSA_ma: Haplic and Stagni-Haplic Luvisols > Calcaric Fluvisol = Rendzic Leptosol > Haplic and Luvi-Haplic Chernozem > Dystric and Eutric Cambisols. Our results showed that the maximum ratio of SOC content in WSA_ma to that in bulk soil was 1.0 at the maximum WSA_ma content regardless of the soil type. An increase in the ratio above this threshold value (1.0) resulted in a decrease in WSA_ma content.