The ‘pole-hooking’ method: A novel and economical technique for in situ tagging small to medium-sized fishes

We describe a new manual procedure for catching and tagging fish underwater, the ‘pole-hooking’ method, and demonstrate and discuss its advantages over standard tagging techniques (i.e. hook-and-line fishing). The new technique was designed for tagging Acanthistius brasilianus [Cuvier, M., Valenciennes, L.B., 1828. Histoire Naturelle des Poissons. Museau de Histoire Naturelle, Paris], a small to medium-sized fish inhabiting rocky reefs of the Argentine coast. The pole-hooking method minimizes injuries, avoids fast depressurization of fish and allows registration of the precise location of capture and release. In addition, the equipment needed is very simple and economical. The mean number of fish tagged per minute using this methodology on shallow rocky reefs (up to 25-m depth) was similar to that obtained during hook-and-line fishing sessions (ca. one tagged fish every 3 min), given similar densities of A. brasilianus in the fished reefs.     

Bioindication and modelling of atmospheric deposition in forests enable exposure and effect monitoring at high spatial density across scales

Key message

Moss surveys provide spatially dense data on environmental concentrations of heavy metals and nitrogen which, together with other biomonitoring and modelling data, can be used for indicating deposition to terrestrial ecosystems and related effects across time and areas of different spatial extension.

Context

For enhancing the spatial resolution of measuring and mapping atmospheric deposition by technical devices and by modelling, moss is used complementarily as bio-monitor.

Aims

This paper investigated whether nitrogen and heavy metal concentrations derived by biomonitoring of atmospheric deposition are statistically meaningful in terms of compliance with minimum sample size across several spatial levels (objective 1), whether this is also true in terms of geostatistical criteria such as spatial auto-correlation and, by this, estimated values for unsampled locations (objective 2) and whether moss indicates atmospheric deposition in a similar way as modelled deposition, tree foliage and natural surface soil at the European and country level, and whether they indicate site-specific variance due to canopy drip (objective 3).

Methods

Data from modelling and biomonitoring atmospheric deposition were statistically analysed by means of minimum sample size calculation, by geostatistics as well as by bivariate correlation analyses and by multivariate correlation analyses using the Classification and Regression Tree approach and the Random Forests method.

Results

It was found that the compliance of measurements with the minimum sample size varies by spatial scale and element measured. For unsampled locations, estimation could be derived. Statistically significant correlations between concentrations of heavy metals and nitrogen in moss and modelled atmospheric deposition, and concentrations in leaves, needles and soil were found. Significant influence of canopy drip on nitrogen concentration in moss was proven.

Conclusion

Moss surveys should complement modelled atmospheric deposition data as well as other biomonitoring approaches and offer a great potential for various terrestrial monitoring programmes dealing with exposure and effects.

     

mTORC1 senses lysosomal amino acids through an inside-out mechanism that requires the vacuolar H(+)-ATPase

The mTOR complex 1 (mTORC1) protein kinase is a master growth regulator that is stimulated by amino acids. Amino acids activate the Rag guanosine triphosphatases (GTPases), which promote the translocation of mTORC1 to the lysosomal surface, the site of mTORC1 activation. We found that the vacuolar H(+)-adenosine triphosphatase ATPase (v-ATPase) is necessary for amino acids to activate mTORC1. The v-ATPase engages in extensive amino acid-sensitive interactions with the Ragulator, a scaffolding complex that anchors the Rag GTPases to the lysosome. In a cell-free system, ATP hydrolysis by the v-ATPase was necessary for amino acids to regulate the v-ATPase-Ragulator interaction and promote mTORC1 translocation. Results obtained in vitro and in human cells suggest that amino acid signaling begins within the lysosomal lumen. These results identify the v-ATPase as a component of the mTOR pathway and delineate a lysosome-associated machinery for amino acid sensing.     

Sequential Elution Technique in Moss Pseudoscleropodium purum: Comparison between the Commonly Used Extracellular Extractant NiCl2 and Other New Extractants

The sequential elution technique (SET) is used to determine the distribution of elements in the different cell fractions of mosses. The extracellular extractants most commonly used in this technique are NiCl₂ and EDTA, although there are certain disadvantages associated with their use. In order to avoid such problems, we searched for new extractants that displace extracellularly bound metals, either because they are present at high concentrations (Ca) or because they have a high affinity for cation exchange sites (Hg and Au). The compounds HCl, NaCl, and CaCl₂ were tested as extractants of the former type, as possible alternatives for the determination of extracellular metals in the moss Pseudoscleropodium purum. Calcium chloride was finally chosen as is it potentially the most successful in terms of binding to the cation exchange sites without altering the membrane permeability. The concentration chosen was 160 mM, as this yielded maximum displacement of Zn without membrane alterations. An experiment was then carried out to test the efficiency of Ca in extracting extracellular Zn, under laboratory and field conditions. In addition, Hg and Au were tested, at different concentrations, as extractants with high affinity for cation exchange sites, as neither of these elements has previously been used in the SET, and both display electronic characteristics that suggest their potential usefulness in displacing other cations from cation exchange sites. The results obtained show that extraction of extracellularly bound metal by high concentrations of Ca should be ruled out, as total extraction of Zn was not achieved. Both Hg and Au produced membrane alterations at low concentrations and moreover, neither was more efficient at extracting Zn than the reference extractant (20 mM NiCl₂).     

Uptake Kinetics of As, Hg, Sb, and Se in the Aquatic Moss Fontinalis antipyretica Hedw

Laboratory experiments were carried out to study the uptake kinetics of selected metals and metalloids in the aquatic moss Fontinalis antipyretica. For this purpose, moss specimens from a clean site were exposed to concentrations of As, Hg, Sb, and Se ranging from 0.1 to 10,000???g?l^?1, for incubation times of between 1 and 22?days, and the tissue concentrations of the metals in the moss specimens were then measured. Uptake kinetics followed different patterns in relation to exposure time, although the most common was Michaelis?CMenten kinetics. On the contrary, the contamination factors followed very similar patterns in relation to the exposure concentrations in all cases, with a good fit to logarithmic equations. The bioconcentration factors tended to decrease as exposure concentration increased. The bioconcentration factors for Hg were extremely high, even at the lowest concentration in water and for the shortest incubation time, which implies that F. antipyretica has a high capacity to magnify Hg levels in water, which is an important characteristic in a good biomonitor. According to the time to reach equilibrium, the minimum exposure time recommended for use in active biomonitoring by means of transplants is very variable, although high levels of the elements, except Sb, were found in the moss tissues within a few days. We do not recommend the use of this moss species to biomonitor low concentrations of Sb in water. The differences in maximum contamination factors and lowest bioconcentration factors suggest that As and Se were the most toxic of the elements under study.     

Physiological Effects of Exposure to Arsenic,Mercury, Antimony and Selenium in the Aquatic Moss Fontinalis antipyretica Hedw.

This study assessed the effect of ambient air pollution on leaf characteristics of white willow, northern red oak, and Scots pine. Willow, oak, and pine saplings were planted at sixteen locations in Belgium, where nitrogen dioxide (NO₂), ozone (O₃), sulfur dioxide (SO₂), and particulate matter (PM₁₀) concentrations were continuously measured. The trees were exposed to ambient air during 6 months (April–September 2010), and, thereafter, specific leaf area (SLA), stomatal resistance (R _s), leaf fluctuating asymmetry (FA), drop contact angle (CA), relative chlorophyll content, and chlorophyll fluorescence (F _v/F _m) were measured. Leaf characteristics of willow, oak, and pine were differently related to the ambient air pollution, indicating a species-dependent response. Willow and pine had a higher SLA at measuring stations with higher NO₂ and lower O₃ concentrations. Willow had a higher R _s and pine had a higher F _v/F _m at measuring stations with a higher NO₂ and lower O₃ concentrations, while oak had a higher F _v/F _m and a lower FA at measuring stations with a higher NO₂ and lower O₃ concentrations. FA and R _s of willow, oak, and pine, SLA of oak, and CA of willow were rather an indicator for local adaptation to the micro-environment than an indicator for the ambient air pollution.     

Comparative analysis of rabbit hemorrhagic disease virus (RHDV) and new RHDV2 virus antigenicity,using specific virus-like particles

In 2010 a new Lagovirus related to rabbit haemorrhagic disease virus (RHDV) emerged in France and has since rapidly spread throughout domestic and wild rabbit populations of several European countries. The new virus, termed RHDV2, exhibits distinctive genetic, antigenic and pathogenic features. Notably, RHDV2 kills rabbits previously vaccinated with RHDV vaccines. Here we report for the first time the generation and characterization of RHDV2-specific virus-like particles (VLPs). Our results further confirmed the differential antigenic properties exhibited by RHDV and RHDV2, highlighting the need of using RHDV2-specific diagnostic assays to monitor the spread of this new virus.     

Detection of protection benefits for predatory fishes depends on census methodology

1. Marine protected areas (MPAs) are used as fisheries management and conservation tools. Well-enforced no-take zones allow the rebuilding of natural populations of exploited species; however, there is still controversy on the role of buffer zones.
2. The effectiveness of MPAs could be underestimated, as fish population assessments depend largely on traditional methodologies that have difficulties in detecting predatory fish because of their low abundances, their patchy distribution, and their reaction to the presence of divers.
3. The performance of different census methods was compared in assessing the protection benefits for large predatory fishes under different protection levels (i.e. no-take and buffer zones) in five Mediterranean MPAs. Specifically, conventional strip transects (CSTs, 50 × 5 m²) and tracked roaming transects combined with distance sampling (TRT + DS, variable lengths) were compared, including a series of TRT-derived estimators with variable transect lengths and fixed widths of 20, 10, and 6 m (TRT20, TRT10, and TRT6, respectively). Additionally, the effectiveness of the MPAs studied and protection levels for conserving large predatory species was evaluated.
4. Transects covering larger areas (i.e. TRT + DS and TRT20) allowed the detection of a greater number of species and yielded more accurate estimates of density and biomass than transects of narrower fixed widths, particularly the CSTs, which were associated with the lowest richness detection capability, accuracy, and precision. On average, both no-take zones and buffer zones appeared effective for the conservation of predatory fishes, indicating that multiple protection areas were ecologically effective. Differences between MPAs were also observed, however, probably arising from both local environmental and management factors.
5. We suggest the implementation of methodologies with larger transects for the study of large predatory fish, combined with CSTs for the rest of the fish community, in order to avoid biases in predatory population assessments, which are key indicators of MPA effectiveness.