Genotypic variation of resistance to southern stem rot of Jerusalem artichoke caused by Sclerotium rolfsii

Southern stem rot caused by Sclerotium rolfsii is a significant problem of Jerusalem artichoke (Helianthus tuberosus L.) production in Thailand. Resistant varieties are not available. The objective of this study was to investigate genetic variability of Jerusalem artichoke genotypes for resistance to stem rot caused by S. rolfsii. Ninety-one Jerusalem artichoke genotypes were evaluated under greenhouse conditions. Traits evaluated included disease score, lesion length, days to permanent wilting, plant height, shoot dry weight, and root dry weight index. Number of days from inoculation until permanent wilting was the only trait with statistically significant differences among genotypes. Based on this trait, genotypes were categorized into two distinct groups: resistant and susceptible. Genotypes that consistently expressed relative resistance to S. rolfsii included HEL 280, HEL 278, HEL 293 and JA 98. These genotypes may be useful to plant breeders as sources of germplasm for incorporating resistance to S. rolfsii into Jerusalem artichoke.     

Inoculation with <Emphasis Type="Italic">Sclerotium rolfsii</Emphasis>, cause of stem rot in Jerusalem artichoke,under field conditions

Stem rot caused by Sclerotium rolfsii is an important problem of Jerusalem artichoke, and breeding of Jerusalem artichoke for resistance to stem rot requires effective screening methods. The objective of this study was to compare methods for inoculating Jerusalem artichoke with S. rolfsii under field conditions. A 4 × 2 × 3 factorial in a randomized complete block with four replications was used in two environments characterized by different rates of fertilizer application (recommended rate and low rate) in the rainy season. The factors included four Jerusalem artichoke varieties (HEL280, HEL278, HEL256 and JA49), two levels of wounding (wounded and not wounded) and three methods of inoculation. The inoculation methods consisted of: 1) non-inoculated natural infection; 2) attaching one colonized sorghum seed at the crown of plants (single sorghum seed method); and 3) spreading 30 g m^?2 of colonized sorghum seeds (broadcast inoculation method). Jerusalem artichoke varieties and inoculation methods were significantly different for disease incidence, whereas the difference between wounded and non wounded treatments was not significant. Significant interactions were found between the variety and wounding method, the variety and inoculation method, wounding method and inoculation method, and inoculation method and environments. Natural infection resulted in the lowest disease incidence (32.2 %), whereas the single sorghum seed and the broadcast inoculation methods had a high disease incidence (79.0 % and 77.3 % respectively) and were not signnificantly different from each other. Broadcast inoculation did not allow differentiation of Jerusalem artichoke varieties for disease incidence, whereas single seed inoculation could better identify the differences among Jerusalem artichoke varieties.     

Detection and integration of gene mapping of downy mildew resistance in maize inbred lines though linkage and association

Association mapping relies on the variation and extent of linkage disequilibrium within a species to identify genes of interest; this is an alternative to linkage mapping in traditional biparental population, which exploits only the variation in the two parents of the mapping population. This study was designed to identify association between 48 SSR markers and downy mildew (DM) resistance using a set of 60 public and private maize inbred lines in Thailand. Genetic diversity and population structure in the set were calculated. A total of 489 alleles with an average gene diversity of 0.70 revealed two subpopulations among the 60 maize inbred lines. Analysis of variance resulted in significant effects of phenotypic values of tested entries, with significant effects of inbred lines, locations, and their interaction. In addition, the analysis of variance for broad sense heritability also indicated high heritability (0.97), and association analysis revealed three significant SSR-trait associations (P < 0.05). These three significant SSR loci have not been reported in previous linkage mapping studies. Our results suggest that new allelic variants associated with DM resistance in these germplasm collections should be useful to help identify new lines carrying alleles for DM resistance in breeding marker-assisted selection programs.     

Detection of candidate R genes and single nucleotide polymorphisms for downy mildew resistance in maize inbred lines by association analysis

Downy mildew (DM) is a plant disease that strongly limits maize production. The resistance (R) genes for this disease have been identified and characterized and serve as important tools for plant disease evaluation. In this study, partial genes for PIC15, PO145579, and zmcf5 were identified and analyzed in a panel of 60 public and private maize inbred lines using bioinformatics and statistics tools. These candidate R genes exhibited an average nucleotide diversity value of 0.015. The negative Tajima’s D values for these genes suggested that purifying selection has played a role in the evolution of maize DM resistance genes. In addition, linkage disequilibrium among these genes occurred across an extent of ~ 200 bp. Using association analysis methods, a general linear model, and a mixed linear model, five polymorphisms within the partial PIC15 and PO145579 genes were detected and associated with DM disease. These are new polymorphisms that have not previously been reported in association with DM disease traits. Therefore, correlations between these new polymorphisms and DM disease in these germplasm collections could advance the development of a functional marker for marker-assisted selection of DM disease resistance in maize breeding programs.     

Association of seedling and adult plant resistance to <Emphasis Type="Italic">Sclerotium rolfsii</Emphasis> in Jerusalem artichoke (<Emphasis Type="Italic">Helianthus tuberosus</Emphasis> L<Emphasis Type="Italic">.</Emphasis>) under field conditions

Stem rot caused by Sclerotium rolfsii is an important problem for Jerusalem artichoke production. Host plant resistance is the most promising method to control disease. If resistant genotypes can be identified in seedlings and this resistance is closely related to resistance at maturity, the evaluation of disease resistance in adult plants could be curtailed or omitted, increasing the speed and efficiency of screening. The objective of this study was to determine the relationship between resistance to S. rolfsii in Jerusalem artichoke in seedling and in adult stages under field conditions. Field experiments were set up in different soil fertility environments in the rainy season during July to October 2014. In each environment, 10 varieties of Jerusalem artichoke with differences in resistance to S. rolfsii were planted and inoculated either 15 or 45 days after transplanting. Higher disease incidence was observed on adult plant stage, but disease severity was similar for both plant stages. The correlations between seedling and adult responses were positive and significant for disease incidence, area under disease progress curve and severity index. Screening for resistance to S. rolfsii in Jerusalem artichoke can be carried out on seedlings, thus improving the efficiency of selection.     

Identification of RAPD and SCAR markers linked to northern leaf blight resistance in waxy corn (Zea mays var. ceratina)

Exserohilum turcicum causes northern corn leaf blight (NCLB), an important disease occurring in maize producing areas throughout the world. Currently, the development of cultivars resistant to E. turcicum seems to be the most efficient method to control NCLB damage. Marker-assisted selection (MAS) enables breeders to improve selection efficiency. The objective of this work was to identify random amplified polymorphic DNA (RAPD) and sequence characterized amplified region (SCAR) markers associated with NCLB resistance. Bulked segregant analysis (BSA) was used to search for RAPD markers linked to NCLB resistance genes, using F₂ segregating population obtained by crossing a susceptible inbred ‘209W’ line with a resistant inbred ‘241W’ line. Two hundred and twenty-two decamer primers were screened to identify four RAPD markers: OPA07₅₂₁, OPA16₄₅₇, OPB09₅₂₀, and OPE20₅₃₆ linked to NCLB resistance phenotype. These markers were converted into dominant SCAR markers: SCA07₄₉₆, SCA16₄₂₀, SCB09₄₆₄, and SCE20₄₂₉, respectively. The RAPD and SCAR markers were developed successfully to identify NCLB resistant genotypes in segregating progenies carrying NCLB resistant traits. Thus, the markers identified in this study should be applicable for MAS for the NCLB resistance in waxy corn breeding programs.