An assessment of the clonality of the components of canine mixed mammary tumours by mitochondrial DNA analysis

The aim of this study was to investigate if mutations in the mitochondrial DNA (mtDNA) D-loop fragment control region of canine mammary mixed tumours could be used as clonal markers that identified the cell population of origin. Ten benign mixed mammary tumours and nine carcinomas arising from benign mixed tumours were microdissected and DNA from epithelial and mesenchymal tumour cells and from normal mammary tissue was examined for sequence variations in a fragment of the hypervariable control region.Identical sequence variants in both the epithelial and mesenchymal components (as well as in the corresponding normal tissue) were found in 80% of the benign mixed tumours and in 89% of the carcinomas arising from benign mixed tumours suggesting a shared clonal origin. The distinctive sequence alterations identified in the epithelial and mesenchymal components of 15.8% of all 19 tumours examined, suggests the possibility that a minority of mammary tumours are polyclonal in origin or that early clonal divergence occurs. Increased mutation within the mtDNA D-loop fragment of mixed tumour components was not observed.     

Degradation by Solar Radiation of Estrogenic Hormones Monitored by UV?CVisible Spectroscopy and Capillary Electrophoresis

This work aims to study the degradation of estrone, 17??-estradiol, 17??-ethinylestradiol, and estriol under direct solar radiation, with an average irradiance value of 5.2?kWh/m². Degradation at different temperatures (4??C, 20??C, and 30??C) was also tested in darkness. Individual solutions of the four estrogens were prepared and subjected to the conditions referred to above. The degradation for each compound was followed, after 7, 14, 21, 28, 35, 63, 91, and 126?days measuring the absorbance at the wavelength of 281?nm. The degradation of the four mixed estrogens was determined using capillary electrophoresis (CE), with a diode array detector and cholic acid, sodium salt plus sodium borate as a background buffer. The results showed no significant degradation rates on samples subjected to different temperatures. However, the results from CE analysis showed that, under direct solar radiation, after 126?days, the degradation rate varied between 75% and 100%. Also, the UV?CVis showed significant changes in the shape of UV?CVis spectra under direct solar radiation.     

RAPD analysis of genetic diversity among and within Portuguese landraces of common white bean (Phaseolus vulgaris L.)

Seventeen landraces of common beans (Phaseolus vulgaris L.) sampled in the North and Centre of Portugal were analyzed at population level for 689 RAPD loci amplified by using forty random primers. The two different parameters used to estimate the genetic variability in and between samples indicate that the inter-population component of the genetic variability is mainly responsible for the diversity found, since only about a 10% would be of an intra-population nature. In addition, the gametic disequilibrium was estimated and reached an average value of 40% for the different combinations of pairs in the 689 loci studied taking the 17 samples as a whole population. Self-pollination, genetic drift and adaptation would thus be favouring the formation of multilocus associations. In addition, the fingerprinting study suggests that each landrace produced unique amplification products allowing it to be distinguished from the other tested genotypes, but, nevertheless, the landraces show a considerable genetic similarity (56% and 70.5% using two different methods). The Neighbour-Joining dendrogram did not show any relation between the geographical distribution of landraces and genetic distance. The results suggest that these Portuguese landraces conserved an important genetic diversity that can be useful to widen the genetic base of currently cultivated beans.     

Towards allelic diversity in the storage proteins of old and currently growing tetraploid and hexaploid wheats in Portugal

Using sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS–PAGE), the different alleles encoded at the 6 glutenin loci and 3 ω-gliadin loci were identified from a set of 134 hexaploid and 128 tetraploid wheat accessions mainly grown in Portugal. In the hexaploid wheats (T. aestivum L.), a total of 56, 42 and 36 patterns were observed for high molecular weight-glutenin subunits (HMW-GS), low molecular weight-glutenin subunits (LMW-GS) and ω-gliadins respectively. For HMW-GS encoded at Glu-A1, Glu-B1 and Glu-D1 loci, 4, 10 and 6 alleles were observed, respectively. LMW-GS displayed similar polymorphism, as Glu-A3, Glu-B3 and Glu-D3 loci, which comprises 5, 9 and 3 alleles. Twenty-four alleles were observed for ω-gliadins found at Gli-A1, Gli-B1 and Gli-D1 loci with, 5, 16 and 3 alleles respectively. For tetraploid collection fifty different alleles were identified for the seven loci studied Glu-A1 (3), Glu-B1 (13), Glu-A3 (6), Glu-B3 (7), Glu-B2 (2), Gli-A1 (5) and Gli-B1 (14). The genetic distances within hexaploid and tetraploid wheats were presented using cluster representation. The mean value of genetic variation indices (H) for wheat storage protein loci was slightly lower in current commercially available varieties (0.592) and highest for old varieties (0.574).     

Seed storage protein diversity in triticale varieties commonly grown in Portugal

A collection of 14 triticale (X Triticosecale Wittmack) varieties commonly grown in Portugal were analysed using sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) to describe allelic diversity in the storage proteins encoded at the Glu-1 (Glu-A1, Glu-B1 and Glu-R1), Gli-1 (Gli-A1 and Gli-B1), Glu-3 (Glu-A3 and Glu-B3), Glu-B2 and Gli-R2 loci. Several alleles were identified: 10 at the loci encoding for high molecular weight(HMW)subunits (seven for glutenin and three for secalins), eight for low molecular weight glutenin subunits, four for γ-gliadins and three for 75K γ-secalins. These results showed that triticale varieties grown in Portugal exhibit great genetic diversity. Knowledge of the diversity of these storage proteins, which are the major gluten components, will greatly increase our understanding of the quality differences that might exist between triticale varieties.     

Sorption-desorption isotherms and biodegradation of glyphosate in two tropical soils aged with eucalyptus biochar

ABSTRACT

The objective of this study was to evaluate the sorption-desorption process and biodegradation of glyphosate in two tropical soils aged with biochar derived from eucalyptus. The biochar aging period was 30 d. There was little difference between the amounts of sorbed glyphosate in Ultisol (96.8, 96.8 and 96.4%) and Alfisol (97.1, 97.5 and 97.4%) soils that were unamended or amended with biochar aged for 0 or 30 d, respectively. Similar amounts of desorbed herbicide occurred in Ultisol (3.3, 3.3 and 3.4%) and Alfisol (4.1, 4.2 and 3.9%) soils, respectively. The degradation time half-life (DT50) of glyphosate in Ultisol unamended and initial amended were higher (38 and 36 d, respectively) than DT50 in the amended soil with 30 d of biochar aging (27 d); and in the Alfisol DT50 was higher in unamended soil (38 d), and similar in soil unamended at 0 and 30 d of biochar aging (21 and 26 d, respectively). The addition of biochar to two tropical soils or its aging did not have any effect on the sorption and desorption of glyphosate and its biodegradation in relation to the unamended soils, and it can did not affect the transport and persistence of this herbicide in soil.     

Aminocyclopyrachlor sorption–desorption and leaching in soil amended with organic materials from sugar cane cultivation

The correct application of a new herbicide depends on knowledge concerning its behaviour within the cultivation system. The objective of this study was to evaluate the sorption–desorption process of aminocyclopyrachlor in soils with the addition of three aged organic materials from sugar cane and their transport via leaching. Sugar cane straw (12 t/ha), filter cake (90 t/ha) and vinasse (200 m³/ha) were added to a clayey soil 15, 30 and 60 days before herbicide application. Sorption and desorption were evaluated by the batch equilibrium method. For leaching assessments, the materials were applied to the soil surface. Sorption was relatively low in all treatments (K_d = 0.17–0.41 L/kg), although significantly higher in soil without organic material addition. A negative correlation between herbicide sorption and increased soil base saturation was observed, indicating competition for sorption sites. With the addition of vinasse, 71% of the herbicide reached the leachate, while <50% reached the leachate in the other treatments. Aminocyclopyrachlor availability was not reduced with organic material addition to the soil, which may be favourable for weed control. However, the presence of vinasse leads to the risk of leaching to deeper soil layers than the seed bank.