Novel Alkaloids from Marine Actinobacteria: Discovery and Characterization

The marine environment is an excellent resource for natural products with therapeutic potential. Its microbial inhabitants, often associated with other marine organisms, are specialized in the synthesis of bioactive secondary metabolites. Similar to their terrestrial counterparts, marine Actinobacteria are a prevalent source of these natural products. Here, we discuss 77 newly discovered alkaloids produced by such marine Actinobacteria between 2017 and mid-2021, as well as the strategies employed in their elucidation. While 12 different classes of alkaloids were unraveled, indoles, diketopiperazines, glutarimides, indolizidines, and pyrroles were most dominant. Discoveries were mainly based on experimental approaches where microbial extracts were analyzed in relation to novel compounds. Although such experimental procedures have proven useful in the past, the methodologies need adaptations to limit the chance of compound rediscovery. On the other hand, genome mining provides a different angle for natural product discovery. While the technology is still relatively young compared to experimental screening, significant improvement has been made in recent years. Together with synthetic biology tools, both genome mining and extract screening provide excellent opportunities for continued drug discovery from marine Actinobacteria.     

Distribution and genetic diversity among Aspergillus flavus isolates across three agro-ecologies essential for maize cultivation in Ghana

Fungal mycotoxins are important contaminants of agricultural commodities that pose serious concerns to producers, consumers and exporters. Aflatoxin is a carcinogenic metabolite produced by the fungi Aspergillus flavus and A. parasiticus. These fungi and other mould species living in the soil contaminate several crops including maize. This study was undertaken with the following objectives: (i) to assess the presence of A. flavus and other moulds in Ghanaian soil; (ii) to determine the distribution and density of A. flavus under three agro-ecologies noted for major maize production; and (iii) to assess the effect of percentage of carbon (C) and nitrogen (N) and soil pH on A. flavus population densities and diversity in the isolates found across the agro-ecologies. The data showed seven moulds that were common across the agro-ecologies. Significant differences (P < 0.05) were observed in the A. flavus density and distribution within and across these agro-ecologies. Fumesua soils recorded the highest levels of A. flavus (1.185 × 10³ cfu g⁻¹) while Akomadan recorded the least (9.76 × 10² cfu g⁻¹). Percentage available C, N and soil pH did not significantly influence A. flavus density. The A. flavus isolates identified in this study varied in genetic sequence within the aflatoxin gene cluster, but these differences were not distinguishable by origin.     

Assessing performance of feedlot operations using epidemiology.

The progressive feedlot veterinarian must be well versed not only in individual production animal medicine, but also in population-based medicine. Feedlot health programs must be goal oriented, and evaluation of these goals is accomplished through diligent use of record systems and analytic evaluation of these record systems. Basic feedlot monitoring parameters include health and economic parameters in addition to the use of bench marking parameters between and among feed yards. When these parameters have significant changes, steps should be initiated to begin field investigations. Feedlot epidemiology uses several novel applications such as partial budgeting, risk assessment, and packing plant audits to provide scientifically sound and economically feasible solutions for the feeding industry.     

Big impacts from small abstractions: The effects of surface water abstraction on freshwater fish assemblages

1. Abstractions and diversions are prevalent in river networks worldwide; however, specific mechanisms and measures reflecting changes in functional characteristics of aquatic assemblages in response to flow abstraction have not been well established. In particular, the influence of small takes on fish assemblages is poorly understood.
2. Field surveys and stable‐isotope analyses were used to evaluate the impact of differing levels of flow abstraction on fish assemblage structure, and native–non‐native patterns of coexistence, associated with small surface water abstractions in four streams in New Zealand. Study design accounted for longitudinal processes (spatial autocorrelation) to isolate the effects of abstractions on fish assemblages.
3. Reaches with reduced flows downstream of abstraction points had significantly lower fish abundances per metre of stream length, probably because of decreased habitat size, altered interspecific interactions and barriers to movement. The loss of larger fish in reaches with high abstraction resulted in shallower mass–abundance slopes and shorter stable isotope‐derived food‐chain lengths, likely to have been caused by fewer trophic links in the food web. The large fish absent from these reaches were flow‐sensitive introduced salmonids, resulting in higher relative abundances of small‐bodied native fish, probably as a result of predatory and competitive release.
4. Quantification of metrics designed to characterize ecosystem functioning as well as abundance and species composition indicated that small water abstractions can alter both the structure and composition of stream fish assemblages and modify the outcomes of native–non‐native species interactions. Thus, a better understanding of the effects of small abstractions could be used to improve the strategic management of fish in invaded riverscapes.

     

The global adaptation of bread wheat at high latitudes

Spring sown bread wheat is grown at high latitudes in Europe, Asia and North America. However, it is not clear what the associations are among environments, particularly in Asia and North America, and whether or not cultivars developed in one region may adapt in another. A yield trial comprised of cultivars developed in northern Kazakhstan, western Siberia, the Canadian Prairies, northern USA, northeastern China and broadly adapted genotypes bred by CIMMYT in Mexico was planted in all the above mentioned environments in 2002–2004. In general, cultivars performed best within the regions they were developed. However, cultivars developed in northern Kazakhstan/western Siberia were the most broadly adapted at high latitudes; they were not significantly different for grain yield from the locally developed cultivars in both China and Canada. Stronger photoperiod response, greater plant height and larger seed weight appeared to be key adaptive features of these materials. At lower latitudes, the Kazakh/Siberian cultivars were significantly lower yielding than all other materials. When low latitude Mexican sites were removed from the analysis, the Chinese locations tended to associate, whereas most Canadian and Kazak/Siberian locations were negatively associated with those from China. SSR analysis of the cultivars from each region split the materials into two general groups, one based on North American cultivars and one comprised of Kazakh/Siberian and Chinese cultivars. Lines developed in Mexico were spread across these two groupings. Evidence suggests that considerable scope exists to improve bread wheat adaptation at high latitudes globally through intercrossing materials originating from Asia and North America.     

Wind-splash erosion of bare peat on UK upland moorlands

Peat is a common land surface material in many countries of the world and is particularly important in upland regions of the UK. Peat landscapes represent an important land use for hill farming, water management, and shooting, and are a globally scarce resource. Wind is a fundamental characteristic of upland environments in the UK and has long been recognised as a significant factor in peat erosion. This paper presents the first results of a project that aims to determine the significance of wind action in the erosion of upland peat. Wind erosion monitoring is being undertaken at Moor House in the North Pennines on a 3-ha area of relatively flat, sparsely vegetated peat. Measurements using arrays of passive horizontal mass flux gauges (fixed orientation vertical slot gauges), together with a vertical array of mass flux samplers (directional), provide estimates of sediment flux. A micrometeorological station records local wind speed (four heights), wind direction, rainfall, soil moisture, and temperature conditions. For 1999 and 2000, the annual horizontal net erosion flux is 0.46 and 0.48 t ha⁻¹, respectively. Results of detailed monitoring over a 10-month period demonstrate that the peat sediment flux collected in windward- and leeward-oriented sediment traps on 10 separate occasions is between 3 and 12 times greater in the windward-facing traps. The concentration of peat with height decays rapidly and the majority of the peat is transported close to the ground surface. Above 0.3 m, very little peat is found. Significant horizontal fluxes of peat occur in both wet and dry periods. This is evaluated using the local micrometeorological data to try and predict sediment yields. Correlations among time-averaged friction velocity measurements, surface conditions, and sediment flux are complex. Event-based measurements, as opposed to cumulative sediment yields, are required to resolve this. These results quantify for the first time the significance of wind action in the erosion of peat in a UK upland environment.