Epidemiological assessment of rinderpest surveillance and control in Uganda between 1990 and 1998

Based on passive and active data, we report on an epidemiological assessment of surveillance and control of rinderpest (RP) in Uganda between 1990 and 1998. Active data were collected by administration of questionnaires to animal health personnel and their auxiliaries and to stockowners in six selected districts of eastern and northeastern Uganda. Passive data were extracted from vaccination and seromonitoring reports, and from field and laboratory reports. RP events were classified as “confirmed outbreaks”, “suspected outbreaks” and “rumours”. The classification of 56% of the RP events as “suspected outbreaks” indicates the difficulty in investigating disease outbreaks in Uganda. Although vaccination coverage and seroprevalence were <85% (the recommended target), they nevertheless corresponded well-reflecting effective vaccination. However, because of the low seroprevalence, a sizable population of cattle in Uganda remained at risk of RP. The agreement between the local and national disease reporting systems was low-to-moderate (κ=0.39); this indicates inefficiency in disease reporting.

Risk factors for RP outbreaks were cattle raids and communal grazing. Based on overlaid thematic maps of seroprevalence, vaccination coverage and RP events, close spatial and temporal associations were observed between cattle raids, transhumance and outbreaks and rumours. The high-risk areas were in the eastern and northeastern parts of the country. The results of this study support a phase approach of following the OIE pathway.     

Germination pretreatment and storage behavior of Terminalia laxiflora seed

Terminalia laxiflora Engl.&Diels.is an important indigenous and multi-purpose species in Ethiopia.However threatened due to low germination and its storage behavior is unknown.In this study,we aimed to(1)test pretreatments for breaking the dormancy of T.laxiflora seed and(2)determine its storage behavior.Seeds were subjected to four pretreatments such as soaking,scarification,high-temperature,and control.Experiments were done before storage and after 2 years of dry storage at cold temperature(-10℃)based on randomized design with four replicates.The first round of experimental results showed that T.laxiflora seeds with high temperature treatments at 78℃for 10 min showed significantly higher germination percentage(80%).In the second round experiment,high-temperature treatment at 78℃for15 min,cold water soaking,high-temperature treatment at78℃for 10 min,hot water soaking,and high-temperature treatment at 78℃for 5 min showed significantly higher germination percentage from the remaining treatments(75,64,58,56,and 53%,respectively).To break the dormancy of T.laxiflora seed and attain good germination result,seeds should be pretreated with high-temperature at 78℃for 10 min to test the initial germination before storage and should be pretreated with high-temperature(at 78℃for15,10,or 5 min),soaked in cold,or hot water for 24 h to monitor the germination after storage.The two experiments show that T.laxiflora produces orthodox seed.     

Genome-wide association study of grain iron and zinc concentration in common bean (Phaseolus vulgaris)

Common bean is one of the widely consumed food security crop in Africa, Asia and South America. It is a rich source of protein, minerals and micronutrients. High genotype by environment interaction is one of the main challenge in breeding for high grain micronutrient concentration. The objective of this study was to estimate SNP markers associated with grain Fe and Zn concentration using 289 common bean genotypes and 11,480 SNP markers. The study revealed that 43 quantitative trait loci (QTLs) were associated with grain Fe and Zn concentration. Five quantitative trait nucleotides (QTNs), that is, QTN Fe_1.1, QTN Fe_6.3, QTN Fe_6.5, QTN Fe_10.3 and QTN Fe_11.6 were detected both at Haramaya and Melkassa locations. Two of the markers, that is, QTN Fe_6.3 and QTN Fe_6.5, were located on chromosome 06 while QTN Fe_1.1, QTN Fe_10.3 and QTN Fe_ 11.6 were residing on chromosomes 01, 10 and 11, respectively. Among these, QTN Fe_11.6 had a large and positive consistent effect across locations. The five stable QTNs along with the potential candidate genes could be used for Fe biofortification through marker assisted selection.     

Teleconnection of rainfall time series in the central Nile Basin with sea surface temperature

We investigated teleconnections of rainfall time series in the central Nile Basin (Sudan and South Sudan) with localities in the global sea surface temperature (SST) field, using monthly rainfall data from 11 gauging stations from 1960 to 1999. Annual rainfall ranged from 100 mm in the north to more than 700 mm in the south, and all stations had a strong contrast between rainy and dry seasons with rainless dry periods of several months. Rainfall time series at the stations were categorized as strongly seasonal, with precipitation concentration index exceeding 16 and seasonality index exceeding 0.9. The rainfall stations were classified into four zones on the basis of annual rainfall, seasonality, and cross-correlations among the stations. We calculated cross-correlations of interannual rainfall time series in summer (July and August) with the global SST field. For short lag times (0 or 1 month), summer rainfall in Zones I and II (northern arid regions) had significant correlations with SST over the eastern Mediterranean Sea and southern Indian Ocean, summer rainfall in Zone III (semiarid region) had significant negative correlations with SST over the Indian Ocean, and summer rainfall in Zone IV (southern wet region) had significant correlations with SST over tropical areas and the southwestern Pacific Ocean. For long lag times (3–6 months), Nile Basin summer rainfall time series had significant correlations with SST in various regions of the Atlantic and Indian Oceans but not the Pacific Ocean. Rainfall in Zones I and II had positive correlations (significance level?<?0.01) with SST south of Greenland and around the Azores Islands and negative correlations with SST south of Madagascar; rainfall in Zone III had negative correlations with SST in parts of the Indian Ocean; and rainfall in Zone IV had significant positive correlations with SST southwest of South Africa and negative correlations with SST in the southwestern Indian Ocean. In sum, rainfall in three of the zones (I, II, and IV) had significant positive and negative correlations with SST in parts of the Indian and Atlantic Oceans. For each of these zones, one positive correlation and one negative correlation were selected and correlations with the time series of the difference between the two SST records were calculated. Correlations of Nile Basin rainfall with the SST differences were stronger than the original positive and negative correlations. The resulting time series of SST difference were applied to an artificial neural network to predict summer rainfall, yielding satisfactory correlation coefficients between the observed and predicted summer rainfall (r?>?0.70).     

Erratum to: A cross-sectional study on bovine tuberculosis in Hawassa town and its surroundings,Southern Ethiopia

Tropical Animal Health and Production -     

A cross-sectional study on bovine tuberculosis in Hawassa town and its surroundings,Southern Ethiopia

A cross-sectional study was conducted in Hawassa town and its surroundings from October 2007 to May 2008 to estimate the prevalence of bovine tuberculosis (BTB) based on comparative interadermal tuberculin test (CIDT) and abattoir survey. Accordingly, 39 herds comprising 413 cattle were subjected to CIDT, and the herd and individual animal prevalence were 48.7% (19/39) and 11.6% (48/413), respectively. One of the 16 milk samples collected from tuberculin-positive cows was culture positive. The prevalence significantly differed among the age group (P = 0.001) and management system (P = 0.001). Thus, age group over four (OR = 7.9) and animal with poor management system (OR = 4.1) had a higher odds for tuberculin reactivity compared to those with age group under four and cattle with good management system, respectively. Of the total 1,023 cattle subjected to postmortem examination, 11 (1.1%) were found to be positive for gross tuberculous lesions. Larger proportion (50%) of TB lesion was recorded in the respiratory pathway followed by digestive system (28.6%) and prescapular lymph nodes (21.4%). Of 14 tissue specimens collected from the gross lesions, four (28.6%) were positive for histopathological TB lesions. In conclusion, this study revealed the importance of BTB in the study area in particular and the region in general.     

Bovine dermatophilosis and its influencing factors in central Ethiopia

A study of bovine cutaneous dermatophilosis was carried out on a total of 6530 animals under different management systems. Of the 6530 animals examined, 334 (5.1%) were found to be positive. A significantly (P > 0.01) higher breed susceptibility was found in Holstein-Friesian cattle (12.8%) than in the local zebu (4.8%). The prevalence of the disease on feed-lots, a ranch, traditional farms and urban dairy farms was 2.9%, 4.2%, 7.1% and 12.8% respectively. Management and breed differences were found to be very important risk factors associated with the disease. However, other factors, including ticks, were also found to be apparently associated with the disease, indicating a complex interplay of several factors in the pathogenesis of dermatophilosis. Possible measures to be taken into account in the control of the disease are suggested.     

Genomics,genetics and breeding of tropical legumes for better livelihoods of smallholder farmers

Legumes are important components of sustainable agricultural production, food, nutrition and income systems of developing countries. In spite of their importance, legume crop production is challenged by a number of biotic (diseases and pests) and abiotic stresses (heat, frost, drought and salinity), edaphic factors (associated with soil nutrient deficits) and policy issues (where less emphasis is put on legumes compared to priority starchy staples). Significant research and development work have been done in the past decade on important grain legumes through collaborative bilateral and multilateral projects as well as the CGIAR Research Program on Grain Legumes (CRP‐GL). Through these initiatives, genomic resources and genomic tools such as draft genome sequence, resequencing data, large‐scale genomewide markers, dense genetic maps, quantitative trait loci (QTLs) and diagnostic markers have been developed for further use in multiple genetic and breeding applications. Also, these mega‐initiatives facilitated release of a number of new varieties and also dissemination of on‐the‐shelf varieties to the farmers. More efforts are needed to enhance genetic gains by reducing the time required in cultivar development through integration of genomics‐assisted breeding approaches and rapid generation advancement.     

Occurrence of mastitis and associated risk factors in lactating goats under pastoral management in Borana,Southern Ethiopia

Mastitis prevalence and related risk factors were studied in 1,072 udder halves of 536 lactating goats from October, 2008 to February, 2009. Clinical and subclinical mastitis were prevalent in 4.3% (95% CI = 2.8, 6.5) and 11.2% (95% CI = 8.7, 14.3) of the studied animals, respectively, resulting in an overall prevalence of 15.5% (95% CI = 12.6, 18.9). Univariate analysis of the potential risk factors has depicted that mastitis was more prevalent in does with previous mastitis history, increased parity, poor body conditions, increased milk production, late lactation stage, long teat, and housed goats. Furthermore, prevalence was significantly higher (p < 0.05) during the wet period of October to November than the dry periods of January to February. No significant variations (p > 0.05) were observed in mastitis prevalence with udder tick infestation, mixing goat with sheep and flock size. With multivariable analysis, lactation stage, teat length, body condition, and season (wet months) have showed significant association with mastitis prevalence, and these factors maintained significant in the stepwise elimination of multivariable logistic regression model. As a result, does in late stage of lactation (OR = 4.3, 1.8, 10.4), poor body condition (OR = 5.0, 1.7, 10.0), long teats (OR = 2.2, 95% CI = 1.1, 4.2) and does examined in wet period were at higher risk of udder infections than early lactation, good body condition, short teat, and examined in dry period, respectively. The study showed occurrence of mastitis and associated risk factors in studied goats, which suggests the need for control intervention. Further investigations into pathogens involved in goat mastitis will optimize our knowledge of causative agents and control interventions.     

Effect of border planting of Eucalyptus citriodora Hook. on the growth and biomass production performance of Cymbopogon winterianus Jowitt ex Bor Grass at Wondo Genet,Southern Ethiopia

The use of Eucalyptus trees, in association with other plants, has the potential to reduce the growth of neighbouring plants or grasses by competing for resources or releasing allelochemicals that may cause other plants to grow slowly. Our purpose here is to assess whether border planting of Eucalyptus is harmful to the establishment,growth, and production of Cymbopogon winterianus at various distances from tree lines in the Wondo Genet Agricultural Research Center in Southern Ethiopia. Several factors were studied: growth performances and yield of aromatic grasses; soil properties, including total nitrogen,organic carbon, and moisture content; and plant leaf nutrient content(NPK) at various distances away from the Eucalyptus citriodora border line were studied. Chemical compositions of hydro-distilled essential oils obtained from selected C. winterianus grasses leaves were analysed by gas chromatography. Plant height, biomass yield, amount of essential oil yield, and essential oil composition all were significantly affected due to Eucalyptus effect in the first10-m distance as compared to beyond 10 m from the tree border line. There were increases in soil total nitrogen,organic carbon, and moisture content with decreasing distances to the Eucalyptus tree border. The result of plant leaf nutrient content(NPK) differed across treatment and distance. The pot experiment(15 cm 9 20 cm), shoot length,and number of leaves of aromatic plants varied in the degree of inhibition based on the concentration of the aqueous extract. Significantly higher inhibitions of the shoot length and number of leaf parameters were observed when using 25% fresh leaf extract compared to other extract levels.