Flow alteration and thermal pollution depress modelled growth rates of an iconic riverine fish,the Murray cod Maccullochella peelii

The serial discontinuity concept (SDC) proposes that hypolimnetic‐releasing impoundments cause major disruptions to the naturally occurring physical, chemical and biological gradients of rivers but that this impact diminishes with distance downstream. Such a gradient in discharge, flow velocity and temperature regime occurs below a large hypolimnetic‐releasing impoundment, the Hume Dam, on the River Murray in south‐eastern Australia. To examine the effects of this disturbance gradient on a warm‐water large‐bodied freshwater fish, the Murray cod (Maccullochella peelii), a bioenergetics model was developed and calibrated to explore energy expended under differing water velocities and temperature regimes. Model simulations predicted negative growth of juveniles directly downstream of the impoundment, due largely to the energetic costs associated with active and, to a lesser extent, standard metabolism outweighing the achievable energetic gains through food consumption. As flow velocity and temperature regimes became more favourable downstream, so did the simulated growth of the species. It was not until +239 km downstream of the impoundment that the model predicted that flow velocity and temperature regimes were suitable for greater weight gains. The modelled growth responses of juvenile Murray cod are consistent with the predictions of the SDC, emphasising that changes in the bioenergetics of individuals are likely to be reflected in reduced growth rates under the changed flow velocity and temperature regimes imposed by disturbance gradients. This research represents a valuable step in the biological understanding of Murray cod within variable riverine environments and emphasises the urgency required to mitigate impacts associated with hypolimnetic impoundments.     

Using unsupervised learning techniques to assess interactions among complex traits in soybeans

Soybean yield components and agronomic traits are connected through physiological pathways that impose tradeoffs through genetic and environmental constraints. Our primary aim is to assess the interdependence of soybean traits by using unsupervised machine learning techniques to divide phenotypic associations into environmental and genetic associations. This study was performed on large scale, jointly analyzing 14 quantitative traits in a large multi-parental population designed for genetic studies. We collected phenotypes from 2012 to 2015 from a soybean nested association panel with 40 families of approximately 140 individuals each. Pearson and Spearman correlations measured phenotypic associations. A multivariate mixed linear model provided genotypic and environmental correlations. To evaluate relationships among traits, the study used principal component and undirected graphical models from phenotypic, genotypic, and environmental correlation matrices. Results indicate that high phenotypic correlation occurs when traits display both genetic and environmental correlations. In genetic terms, length of reproductive period, node number, and canopy coverage play important roles in determining yield potential. Optimal grain yield production occurs when the growing environment favors faster canopy closure and extended reproductive length. Environmental associations found among yield components give insight into the nature of yield component compensation. The use of unsupervised learning methods provides a good framework for investigating interactions among various quantitative traits and defining target traits for breeding.     

Chemical composition of caneberry (Rubus spp.) seeds and oils and their antioxidant potential

Caneberries (Rubus spp. L.) are grown primarily throughout the Pacific Northwestern United States and Canada. Processing of caneberry fruit typically removes the seed, and the development of a value-added use of seeds could expand the market for caneberries and the profit margins for growers. An initial step toward the use of the seeds is a characterization of seed and oil. Our investigation has described compositional characteristics for seeds of five commonly grown caneberry species: red raspberry, black raspberry, boysenberry, Marion blackberry, and evergreen blackberry. Seeds from all five species had 6-7% protein and 11-18% oil. The oils contained 53-63% linoleic acid, 15-31% linolenic acid, and 3-8% saturated fatty acids. The two smaller seeded raspberry species had higher percentages of oil, the lowest amounts of saturated fatty acid, and the highest amounts of linolenic acid. Antioxidant capacities were detected both for whole seeds and for cold-pressed oils but did not correlate to total phenolics or tocopherols. Ellagitannins and free ellagic acid were the main phenolics detected in all five caneberry species and were approximately 3-fold more abundant in the blackberries and the boysenberry than in the raspberries.     

The production of azadirachtin by in-vitro tissue cultures of neem,Azadirachta indica

Callus produced from leaves of a Ghanaian strain of the neem tree, Azadirachta indica A. Juss has been shown to produce the natural insecticide azadirachtin when grown in a defined medium. The azadirachtin was isolated by standard procedures of solvent partition and column chromatography monitored by supercritical fluid chromatography. Biological activity was monitored with antifeedant tests using the desert locust (Schistocerca gregaria Forsk.). The azadirachtin was identified by chromatography on three independent chromatographic systems (SFC, HPLC & TLC) and two thin-layer colour tests. It has 100% antifeedant activity at < 0.04mg litre^?1. The yield of azadirachtin was 0.0007% based on dry weight of callus.     

Protozoans and Meiofauna Inhabiting a Bead Filter: A Preliminary Investigation of Their Role as Potential Bioindicators of Shrimp Production System Health

Abstract.— Protozoans are used as bioindicators of system health in wastewater treatment plants. The objective of this study was to determine if protozoans or meiofauna could be useful bioindicators of shrimp production system health. Specifically, we noted the relative abundance of protozoans and meiofauna inhabiting a propeller-washed bead filter (PBF) used in a recirculating aquaculture system for intensive shrimp production during a 12-wk grow-out trial. Based on microscopic analysis of PBF backwash, results indicate that (1) the presence of nematodes and rotifers may reflect the age and/or organic loading of the filter; (2) feed quantity affects protozoan biomass, whereas feed quality impacts the nutritional group of protozoans that survive; (3) free-living amoeba typically are surface associated in their active feeding state and were present in most PBF samples; and (4) ciliates likely play an important ecological role in PBF used in intensive shrimp culture.     

Growth of cultured mussels (Perna canaliculus Gmelin 1791) at a deep-water chlorophyll maximum layer

We tested the hypothesis that yield of the mussel Perna canaliculus (Gmelin 1791) could be increased by placing culture ropes deep into the water column to take advantage of deep‐water chlorophyll a maxima. The study site, in Pelorus Sound, New Zealand, showed periods of thermal stratification of the water column, causing a high concentration of phytoplankton in deeper water, at the thermocline. Mussels were grown simultaneously at 5 and 17 m, for up to 96 days. Mussel growth and condition index data showed no significant differences between the two depth treatments, indicating that in this system there may not be substantial mussel productivity benefits from lowering mussel farms to the deep‐water chlorophyll maximum layer.     

Metal Pools, Fluxes, and Budgets in an Acidified Forested Catchment on the Precambrian Shield, Central Ontario, Canada

Atmospheric emissions of metals have decreased in North America; yet, metals remain an environmental concern due to their environmental persistence and toxicity to biota. In this study, pools and mass budgets were calculated for 15 metals in an acidified forested catchment in Central Ontario. Metals that were enriched in bulk deposition over background average values (As, Cd, Pb, Zn) were generally enriched in the forest floor and upper lake sediment. While the metal pool in vegetation is small compared with the soil pool, internal cycling of metals via litterfall is comparable to atmospheric deposition, soil water, and stream fluxes. Partitioning coefficients calculated from metal concentrations in soil water and bulk soil suggest that Cd, Mn, Ni, and Zn are the most mobile. The mineral soil and lake sediments were sinks for most metals, while the wetland was a source of metals during the study year, which was a drought year. Overall, lithogenic metals (Al, Ba, Co, Fe, Mn, Rb, Sr, Zn) primarily from a weathering source generally exhibited net export from the catchment, while metals contained in atmospheric pollution (As, Cd, Cr, Cu, Ni, Pb, V) exhibited net retention. Despite the acidified nature of the catchment, it functions to retain many pollutant metals.     

Does Biochar Improve Establishment of Tree Seedlings in Saline Sodic Soils?

Reforestation of saline sodic soil is increasingly undertaken as a means of reclaiming otherwise unproductive agricultural land. Currently, restoration of degraded land is limited to species with high tolerances of salinity. Biochar application has the potential to improve physical, biological and chemical properties of these soils to allow establishment of a wider range of plants. In a glasshouse trial, we applied biochar made from Acacia pycnantha (5 Mg ha⁻¹) or no biochar to either a low (EC_e 4·75 dS m⁻¹, ESP 6·9), a moderate (EC_e 27·6 dS m⁻¹, ESP 29·3) or a high (EC_e 49·4 dS m⁻¹, ESP 45·1) saline sodic soil. The regional common reforestation species Eucalyptus viminalis and Acacia mearnsii were planted as tubestock in to the soils. Early establishment indicators, including growth, plant condition and nutrition, were assessed at the end of a simulated growing season, 108 days after biochar application. Application of biochar increased height, and decreased root : shoot and the concentration of Mn, N and S in plants of E. viminalis when grown in the highly saline sodic soil. Biochar application increased the concentration of B in leaves of E. viminalis and increased the concentration of P, K and S in leaves of A. mearnsii when grown in the low saline sodic soil. The results confirm that there is potential for biochar to assist in reforestation of saline sodic soils. Copyright © 2015 John Wiley & Sons, Ltd.     

Evaluation of elemental depletion weathering rate estimation methods on acid-sensitive soils of north-eastern Alberta, Canada

Immobile element-based weathering estimation methods assume that Zr (or Ti) is an immobile element, and that weathering rates of other elements can be estimated according to the enrichment of Zr in weathered horizons relative to an unweathered parent material. This approach was used to estimate base cation weathering rates for 33 soil profiles on acid-sensitive terrain in north-eastern Alberta. Zirconium generally showed enrichment within the rooting zone, but the deepest (subsoil) samples were not always associated with the lowest Zr concentrations. Weathering rates estimated with the Zr depletion and Pedological Mass Balance (PMB) methods were generally low (ranges: 0-51 and 0-58 mmol_c m^− 2 yr^− 1, respectively); however, low base cation oxide concentrations and heterogeneity within soil profiles complicated weathering rate calculations and net base cation gains were calculated for several (six) sites. Evaluation of the Zr depletion and PMB weathering estimates against those calculated with the process-oriented PROFILE model at a subset (n = 9) of the sites indicated the estimates were poorly related, with PROFILE rates typically being higher. The effects-based emissions management strategy for acid precursors in this region requires spatial coverage of soil properties (including weathering rates) across a large area, but the apparent limitations associated with the immobile element based methods in this region: identifying representative parent soils and deriving weathering rate estimates comparable to more robust methods are arguments against their candidacy for future use.     

A Dendrochemical Survey of Sugar Maple (Acer saccharum Marsh) in South-Central Ontario,Canada

A dendrochemical survey of sugar maple (Acer saccharum Marsh) was conducted insouth-central Ontario, which encompassed twenty-two sites in areas that both exceeded orwere below the published Critical Loads with respect to acid deposition. Areas thatexceeded the Critical Load were located remote from point emission sources, but were alsocharacterized by thin, nutrient-poor soils overlying the Precambrian Shield. ThepH_aq of surface soils (A-horizon) was lower at sites on the Precambrian Shield andwater-extractable concentrations of Ca decreased exponentially with decreasing soil pH. Significant polynomial relationships between soil pH and soil Ca and sugar maple growth,assessed as cumulative tree-ring growth between 1949 and 1998, explained 40% and 37% ofthe variation in sugar maple growth respectively, with lowest growth associated with lowsoil pH and low soil Ca. Furthermore, there was a significant linearrelationship between wood Ca concentrations (averaged between 1949 and 1998) and soil pHand concentrations of several trace elements in wood (Mn, Pb, Zn, Cd, Sr and Rb) were greater atlow soil pH. Poor sugar maple growth was associated with low wood Ca concentrations andhigh wood Al levels, which together accounted for 43% of the variation in sugar maplegrowth in a multiple regression model. None of the other wood chemistry variablescontributed significantly to the model. These data suggest that sugar maple grows poorlyon acidic soils with low Ca and high Al levels. Although such acidic podzols occurnaturally in some areas overlying the Precambrian Shield, if Ca losses due to aciddeposition and/or harvesting exceed inputs through weathering and deposition(i.e. exceed Critical Load), sugar maple growth may be adversely affected and ultimately lead toincreased incidence of sugar maple decline.