Characterisation of caecum and crop microbiota of Indian indigenous chicken targeting multiple hypervariable regions within 16S rRNA gene

1. A comparative analysis of caecum and crop microbiota of chick, grower and adult stages of Indian indigenous chickens was conducted to investigate the role of the microbiota of the gastrointestinal tract, which play an important role in host performance, health and immunity.

2. High-throughput Illumina sequencing was performed for V3, V4 and V4-V6 hypervariable regions of the 16S rRNA gene. M5RNA and M5NR databases under MG-RAST were used for metagenomic datasets annotation.

3. In the crop, Firmicutes (~78%) and Proteobacteria (~16%) were the predominant phyla whereas in the caecum, Firmicutes (~50%), Bacteroidetes (~29%) and Actinobacteria (~10%) were predominant. The Shannon-Wiener diversity index suggested that sample richness and diversity increased as the chicken aged.

4. For the first time, the presence of Lactobacillus species such as L. frumenti, L. antri, L. mucosae in the chicken crop along with Kineococcus radiotolerans, Desulfohalobium retbaense and L. jensenii in the caecum are reported. Many of these bacterial species have been found to be involved in immune response modulation and disease prevention in pigs and humans. The gut microbiome of the indigenous chicken was enriched with microbes having probiotic potential which might be essential for their adaptability.

     

Resistance and resilience of soil biological indicators: A case study with multi-walled carbon nanotube

Soil ecosystem is experiencing stresses due to climate change, and soil inhabitants try to demonstrate their inherent resistance and resilience against those stresses. Application of nanomaterials as agricultural inputs could bring shifts in resistance and resilience patterns of soil microbes and associated enzymes, especially under short-term heat stress. With this background, the impacts of multi-walled carbon nanotube (MWCNT) on the resistance and resilience of soil biological indicators were evaluated. An incubation experiment was conducted with varied MWCNT concentrations (0, 50, 100, 250, and 500 mg kg^-1 soil) for 90 d after 24-h heat stress at 48 ±2 ℃ to assess the impacts of MWCNT on soil enzyme activities and microbial populations vis-à-vis their resistance and resilience indices under short-term exposure to heat stress. Enzyme activities were reduced after exposure to heat stress. Resistance indices of enzyme activities were enhanced by MWCNT application on day 1 after heat stress, whereas there was no recovery of enzyme activities after 90-d incubation. Like soil enzyme activities, resistance index values of soil microbial populations followed the similar trend and were improved by MWCNT application. Multi-walled carbon nanotube has the potential to improve resistance indices of soil enzyme activities and microbial populations under heat stress, although they could not recover to their original state during periodical incubation after heat stress. This study helps to understand the relative changes of biological indicators under MWCNT and their ability to withstand heat stress.     

Potential,constraints and applications of in vitro methods in improving grain legumes

Grain legumes, the important constituents of sustainability‐based cropping systems and energy‐limited vegetarian diets have long been the subject of scientific research. Tremendous technological strides were made in the so‐called orphan crops, in terms of both varietal improvement and generation of basic information. Despite recalcitrancy and high genotype dependency, in vitro culture techniques such as organogenesis, in vitro mutagenesis, embryo rescue and in vitro gene transfer have been deployed for improvement of several grain legumes and these played an important role in introgression of desirable genes from related and distant species and creation of additional genetic variability. Stable and reproducible regeneration protocols resulted in the development of genetically modified chickpea, pigeon pea, cowpea, mungbean, etc., while embryo rescue was deployed successfully for recovery of interspecific recombinants, a few of them exploited for the development of commercial cultivars. Nevertheless, doubled haploidy witnessed limited success and protoplast regeneration and in vitro mutagenesis remained of academic interest. The present review focuses on the progress, achievements, constraints and perspectives of using in vitro technology in grain legume improvement.     

Genetic variation in minerals,crude protein and structural carbohydrates of foliage in provenances of young plants ofProsopis cineraria (L.) Druce in India

Prosopis cineraria is an important species for aridzone agroforestry in India. Information on the chemical composition and nutritive value of the leaves of young trees that will be useful in screening the provenances, is lacking. Chemical composition (N, P, K, Ca, Mg, Na), crude protein, and structural carbohydrates (neutral detergent fibre, acid detergent fibre, cellulose, hemicellulose, and lignin) of the foliage of one-year-old plants of 31 provenances ofProsopis cineraria were determined. The seeds were collected from 16°50 N to 29°55 N latitude and 69°49 E to 78°03 E longitude in India, and grown at Hisar (29°10 N latitude, 75°46 E longitude and 215 m altitude). Mineral contents (except N and P), crude protein, and structural carbohydrates varied significantly (p<0.05) between provenances, and the greatest amount of N, P, crude protein, NDF, ADF and lignin contents were found in Hisar provenance. The in vitro dry matter digestibility varied from 18.2% in Gandhinagar provenance to 34.0% in that of Barmer provenance.     

Evaluation and selection of multipurpose tree for improving soil hydro-physical behaviour under hilly eco-system of north east India

Soil hydro-physical behaviour was studied under a 20-year old agroforestry plantation consisting of five multipurpose tree species (Pinus kesiya Royle ex-Gordon, Alnus nepalensis D.Don, Parkia roxburghii G.Don, Michelia oblonga Wall. and Gmelina arboria Roxb.) maintained under normal recommended practices at Indian Council of Agricultural Research (ICAR) Complex, Umiam, Meghalaya, India. The aim was to select tree species, which could act as better bio-ameliorant as well as provides higher economic return in highly degraded soil of northeastern hill region of India. A site without vegetation (no tree) nearby the plantation was also selected as control for comparison. Soil samples for various hydro-physical analysis, were taken from 0–15 and 15–30 cm soil depth at a distance of 1 m from respective tree species during wet and dry season of 2003–2004. No appreciable differences in relative contents of textural separates of sand, silt and clay were observed among various tree covers. Surface cover with constant leaf litter fall and extensive root system increased soil organic carbon, helped in better soil aggregation, improved water transmissivity and infiltrability and in turn, reduced soil erosion in the present study. However, due to variation in quantity of leaf litter fall and root biomass, these parameters differed among tree species. Of the tree species, P. kesiya, M. oblonga and A. nepalensis were found to be rated best for bio-amelioration of soils as these tree covers had more root and shoot biomass and more litter fall compared to other species. However, considering both timber production and improvement in hydro-physical behaviour, M. oblonga was found best among the tested tree species. The study, thus, suggested that inclusion of tree species M. oblonga in agroforestry system is a viable option for natural resource management and could sustain long-term soil productivity in a highly degraded soil of this region as well as for food security of the resource poor people of North East India.     

Morpho-physio and anatomical characterization of the indigenous Himalayan crabapple: Malus baccata (L.) Borkh. (Rohru) and exotic Malus pumila Mill. for dwarfing traits

Genetic Resources and Crop Evolution - The wild Malus germplasm is considered as a gene reservoir for various biotic and abiotic stresses tolerance/resistance genes, including important novel...     

Subacute toxicity of dietary 3-acetyldeoxynivalenol in mice.

3-Acetyldeoxynivalenol was incorporated into a semisynthetic diet at levels of 2.5, 5, 10 or 20 ppm and fed to mice for up to 48 days. Body weights and feed consumption were determined, and blood samples for hematological evaluation were taken. Selected tissues were examined microscopically and the humoral immune response was assessed using the Jerne plaque assay. 3-Acetyldeoxynivalenol caused a dose-related depressed feed consumption within the first seven days and reduced body weight until day 14 when fed at levels up to 10 ppm. When fed at a level of 20 ppm, an initial depression in body weight gain and a general malaise were followed by a return to normal. At necropsy, no macroscopic or microscopic lesions could be found. The immune response was not significantly affected after seven or 14 days, but at 21 days, a dose-dependent enhanced response was observed. The findings indicate that, after an initial period of reduced feed intake, animals are apparently able to overcome the toxic effects of 3-acetyldeoxynivalenol.     

Genetic analysis and pyramiding of two gall midge resistance genes (Gm-2 and Gm-6t) in rice ( Oryza sativa L.)

Asian rice gall midge (Orseolia oryzae) is a major pest across much of south and southeast Asia. This pest is genetically diverse and many gall midge biotypes are known to exist in each country. During the last three decades, host plant resistance has proved to be the most effective mechanism of controlling the Asian rice gall midge. Seven genes conditioning resistance to gall midge larvae have been identified in rice (Oryza sativa) and are being used in cultivar improvement programs. However, some of these genes are rendered ineffective by new gall midge biotypes. Increased understanding of genetics, inheritance, allelic relationships and linkage is necessary to maximise the durability of major gene resistance by the pyramiding of these genes. The two genes, Gm-2 and Gm-6(t), are known to confer resistance against a number of biotypes in India and China, respectively. An F₃ population derived from a cross between Duokang #1 (donor of Gm-6(t)) and Phalguna (donor of Gm-2) was screened against Chinese gall midge biotype 4 at Guangdong, China, and Indian gall midge biotype 1 at Raipur, India. At each location, separately,a single gene governed resistance. The parallel segregation of 417 F₃progenies for both biotypes at two locations revealed that recombination had occurred between the two genes, establishing that the two genes are not allelic. However, the two genes Gm-2 and Gm-6(t), were found to be linked with a distance of ∼16.3 cM. A number of lines homozygous at one locus and segregating for the other locus were identified and selected. These lines were selfed to obtain lines homozygous for the favourable alleles at both loci (two locus pyramids). This is the first report on use of conventional host-pest interaction method for pyramiding two closely located Gm-resistance loci of dissimilar effects. The implications of deployment of these pyramids within and across country borders, with reference to the prevailing gall midge populations are discussed. This revised version was published online in August 2006 with corrections to the Cover Date.