Point mutations including a novel Pro-197-Phe mutation confer cross-resistance to acetolactate synthase (ALS) inhibiting herbicides in Lactuca serriola in Australia

BACKGROUND

Control of prickly lettuce has become increasingly difficult for lentil growers in southern Australia because of widespread resistance to common herbicides, a lack of alternative herbicide options and the prolific production of highly mobile seed. This study aimed to quantify acetolactate synthase (ALS)-inhibiting herbicide resistance in the Mid North (MN) and Yorke Peninsula (YP) of South Australia, characterize the resistance mutations present and investigate population structure and gene flow in this species.

RESULTS

Resistance was identified in all populations tested, with average survival of 92% to chlorsulfuron and 95% to imazamox + imazapyr. Five different amino acid substitutions were identified at proline 197 of the ALS gene. There was no significant difference in the median lethal dose (LD₅₀) between plants with these five different substitutions when treated with metsulfuron-methyl; however, the imidazolinone resistance level was higher in plants with a phenylalanine substitution and lower in plants with a serine. Population structure based on 701 single nucleotide polymorphisms and 271 individuals provided evidence for both independent evolution of the same mutation in different populations, as well as frequent short- to medium-distance dispersal accompanied by occasional long-distance dispersal events. The overall inbreeding coefficient (F_IS) was calculated at 0.5174, indicating an intermediate level of outcrossing despite the cross-pollination experiment showing only low outcrossing. In the structure analyses, most individuals from YP were assigned to a single cluster, whereas most individuals from MN were assigned 50% to each of two clusters, indicating some genetic differences between these two regions, but also evidence for dispersal between them.

CONCLUSIONS

Use of imidazolinone herbicides has selected for mutations conferring higher levels of resistance, such as the Pro-197-Phe mutation, and resulted in further spread of resistance in this species. © 2023 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.     

Population structure of ALS-inhibiting herbicide-resistant Sonchus oleraceus in South Australia

Background

Annual sowthistle is a weed that is difficult to control in lentil crops in southern Australia due to a lack of herbicide options, widespread herbicide resistance and prolific production of highly mobile seed. This study investigates herbicide resistance in annual sowthistle in the Mid-North (MN) and Yorke Peninsula (YP) regions of South Australia, identifies and characterizes the mechanisms of acetolactate-synthase (ALS)-inhibitor resistance in this amphidiploid species, and combines this with analyses of population structure and gene flow.

Results

ALS-inhibitor-resistant annual sowthistle is widespread across the YP and MN of South Australia and is associated with a variety of Proline-197 mutations of the ALS gene, including leucine, alanine, arginine, serine, threonine and histidine. These mutations were found in different combinations on either of the two copies of the ALS gene. An additional 200 tissue samples were collected from across a single field on the YP and the ALS gene was sequenced for all these individuals. Different ALS-inhibitor resistance profiles were evident between mutation combinations and within mutation combinations, possibly mediated by differing subgenome assortment of the mutations, or altered gene experession of the two ALS homeologs. Population genetics analysis showed evidence of long-distance dispersal, resulting in highly mobile resistance genes, and multiple instances of resistance mutation evolution.

Conclusions

Continuing selection of Sonchus oleraceus populations with ALS-inhibiting herbicides has resulted in the accumulation of additional mutations within the ALS gene. New practices to control herbicide-resistant S. oleraceus should be examined, and control should focus on reducing seed set and dispersal to prevent the spread of emerging cases of resistance. © 2023 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.     

Multiple invasions of Bemisia argentifolii into Australia and its current genetic connectivity across space

Detecting the number of invasions is crucial to understanding the process of invasion and perhaps the success of some invasive pest species. Detecting multiple invasions can be difficult using partial mitochondrial COI, however, due to lack of variation. To examine the post-invasion history of Bemisia argentifolii (also called B. tabaci Middle East-Asia Minor 1 and B biotype) in Australia and test for the presence of spatial genetic structure, we developed microsatellite loci based on the whole-genome sequence of B. argentifolii. We investigated gene flow among populations of B. argentifolii collected between 1995 and 2018, covering the time since the first detection in Australia (1994). Structure plots and PCAs of the microsatellite data revealed three clusters in 1995–1996, indicating multiple introductions. Since then, B. argentifolii has become a widespread single genetic population across the continent, with no geographic genetic structure in recent samples. The haplotype network generated from mitochondrial COI shows that Australian B. argentifolii mostly has the same haplotype as the invasive populations established elsewhere around the world. Analysis of the more recent samples showed that gene flow was high across regions, indicating movement of B. argentifolii across Australia is currently extensive. Undesirable traits and pathogens not already present in Australia, including insecticide resistance and plant viruses, could arrive with any new introductions of B. argentifolii and are likely to spread rapidly and be difficult to contain. This highlights the importance of biosecurity and continued quarantine measures to prevent new incursions, even when a species has already established.