A high-resolution radiation hybrid map of the human genome draft sequence

We have constructed a physical map of the human genome by using a panel of 90 whole-genome radiation hybrids (the TNG panel) in conjunction with 40,322 sequence-tagged sites (STSs) derived from random genomic sequences as well as expressed sequences. Of 36,678 STSs on the TNG radiation hybrid map, only 3604 (9.8%) were absent from the unassembled draft sequence of the human genome. Of 20,030 STSs ordered on the TNG map as well as the assembled human genome draft sequence and the Celera assembled human genome sequence, 36% of the STSs had a discrepant order between the working draft sequence and the Celera sequence. The TNG map order was identical to one of the two sequence orders in 60% of these discrepant cases.     

Environmental correlates of body size distribution in Cyprinidae (Actinopterygians) depend on phylogenetic scale

The pattern of increasing species body size with increasing latitude has been noticed in different groups of animals. Here, we used seven key environmental factors and independent contrasts to assess body size latitudinal clines in Cyprinidae at two phylogenetic levels (inter‐ and intragenera), which were defined using a genus‐level supertree. Model selection procedures revealed that environmental factors shaping body size variation in Cyprinidae differed according to the phylogenetic scale considered. At the higher phylogenetic level, we found that both temperature (negative effect) and habitat availability (positive effect of drainage basin surface area) constituted mechanistic explanations of large‐scale body size distribution. No temperature‐related body size cline was observed at the intragenus level. Instead, competitive interaction (negative effect of species richness), habitat availability (positive effect of drainage basin surface area), migration ability and available energy (positive effects of glacial coverage and actual evapotranspiration) constitute alternative explanations at this lower phylogenetic scale. We conclude that (i) at the intergenus level, cyprinids do show a tendency to be smaller at high temperatures and larger at low temperatures, (ii) this tendency no longer exists at the intragenus level, (iii) latitude per se is a weak predictor of body size clines whatever the taxonomic level analysed, (iv) generalising geographical body size patterns may be rendered difficult by the superimposition of a series of mechanisms across different taxonomic scales, and (v) habitat size, here acting positively at both taxonomic scales, may play a major role in shaping riverine species body size clines.     

Environmental changes in man‐made coastal dune pools since 1850 as indicated by sedimentary and epiphytic diatom assemblages (Belgium)

• 1. Diatom assemblages of man‐made coastal dune wetlands between Blankenberge and Heist (Belgium), dating from 1852 to 1929 and sampled from herbarium specimens of macrophytes, were compared with more recent samples collected in the remaining calcareous dune marshes and pools in this area.
• 2. Overall, nutrient conditions inferred from the reference assemblages were fairly eutrophic for phosphorus. Only a minority of the historical assemblages pointed to presumably nitrogen‐limited conditions.
• 3. Significant alterations in general assemblage composition were observed, including a marked decline of epiphytic species, and a decrease in the compositional variation in sediment diatom assemblages. These changes can be attributed mainly to an increased availability of nutrients and degradable organic matter since the mid 1970s. No changes in the salinity range seem to have occurred, suggesting fairly stable hydrological conditions.
• 4. Possible causes for eutrophication include increased atmospheric deposition of nutrients, but also more site‐related phenomena such as guanotrophication, angling and, perhaps, effects of nature management on soil–nutrient cycling. Their relative importance needs to be established and further monitoring is necessary.
• 5. Measures are required to reduce nutrient levels of both permanently and periodically inundated sites and to promote small‐scale habitat differentiation. Due to physical constraints, the latter will be possible only by mimicking the processes that act upon more natural dune systems in management practice.

Copyright © 2003 John Wiley & Sons, Ltd.     

Extracting 3D from motion: differences in human and monkey intraparietal cortex

We compared three-dimensional structure-from-motion (3D-SFM) processing in awake monkeys and humans using functional magnetic resonance imaging. Occipital and midlevel extrastriate visual areas showed similar activation by 3D-SFM stimuli in both species. In contrast, intraparietal areas showed significant 3D-SFM activation in humans but not in monkeys. This suggests that human intraparietal cortex contains visuospatial processing areas that are not present in monkeys.     

An integrated spatial assessment of the investment potential of three species in southern Ontario, Canada inclusive of carbon benefits

This study explores the economic feasibility of several long-rotation afforestation scenarios for southern Ontario, Canada. Three species, red pine (Pinus resinosa Ait.), Norway spruce (Picea abies L.) and black walnut (Juglans nigra L.) are examined. We integrate growth and yield models, site suitability maps, and several management scenarios to investigate the investment attractiveness of these species inclusive and exclusive of carbon sequestration values. We report net present values (NPV), internal rates of return (IRR) and two break-even price metrics. For wood value only scenarios the IRRs range from 4.3 to 4.6% for red pine and 3.4–3.6% for Norway spruce (for the most attractive 10,000 ha, in a single rotation scenario). Black walnut had rates of return 3.5–3.7% for the most attractive 10,000 ha area. Adding carbon valued at Cdn $3.4 per metric ton CO_2 − e (roughly 2005 prices in the Chicago Climate Exchange) increases rates of return by about 0.6% for red pine and Norway spruce and 0.4% for black walnut scenarios. Perhaps surprisingly these returns are comparable and better than 20-year rotation hybrid poplar plantations. To achieve a 6% real rate of return break-even carbon prices were $10.7/t CO_2 − e for red pine, $12.6/t CO_2 − e for Norway spruce and $17.2/t CO_2 − e for black walnut (again for the “best” 10,000 ha). Although somewhat unremarkable, the results suggest that these longer-rotation species may be a better investment than perhaps previously expected if landowners have the appropriate site conditions.     

Distribution and environmental requirements of stream habitat with Ranunculion fluitantis and Callitricho‐Batrachion vegetation in lower Belgium (Flanders)

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Risk maps for targeting exotic plant pest detection programs in the United States

In the United States, pest risk maps are used by the Cooperative Agricultural Pest Survey for spatial and temporal targeting of exotic plant pest detection programs. Methods are described to create standardized host distribution, climate and pathway risk maps for the top nationally ranked exotic pest targets. Two examples are provided to illustrate the risk mapping process: late wilt of corn (Harpophora maydis) and the giant African land snail (Achatina fulica). Host risk maps were made from county‐level crop census and USDA Forest Inventory and Analysis data, respectively. Climate risk maps were made using the North Carolina State University–USDA APHIS Plant Pest Forecasting System (NAPPFAST), which uses a web‐based graphical user interface to link climatic and geographic databases with interactive templates for biological modelling. Pathway risk maps were made using freight flow allocation data sets to move commodities from 7 world regions to 3162 US urban areas. A new aggregation technique based on the Pareto dominance principle was used to integrate maps of host abundance, climate and pathway risks into a single decision support product. The maps are publicly available online ( http://www.nappfast.org ). Key recommendations to improve the risk maps and their delivery systems are discussed.     

Edaphic interslope and valley bottom differences at “Evolution Canyon”, Lower Nahal Oren, Mount Carmel, Israel

The opposite slopes of lower Nahal Oren, Mount Carmel, Israel, designated “Evolution Canyon”, display physical and biotic contrasts, although both are cut in Upper Cenomanian calcareous limestone. The three-fold greater solar radiation makes the south-facing slope warmer, drier and more variable than the north-facing slope and valley bottom. Consequently, biodiversity is greater. Microclimate (mesic–xeric) is a major force driving adaptive evolution, and causing soil divergence. The soils on both slopes are Terra Rossas in the Israeli classification system (Rhodoxeralfs in US taxonomy). However, selected properties (pH, humus content, NH₄–N content, cation exchange capacity and others) display greater interslope than intraslope differences. The north-facing Terra Rossas have a dark-coloured A1 humic horizon, which is better developed than in south-facing Terra Rossas. Differences in soil morphology, moisture regime and microfabric between the north- and south-facing soils suggest that they belong to different taxonomic classes. These differences probably result in part from the forested ecosystem of the north-facing slope versus the savanna-like ecosystem of the opposite slope.     

Effects of permanence requirements on afforestation choices for carbon sequestration for Ontario, Canada

This study examines the economic and spatial impacts of afforestation choices for carbon sequestration in Ontario, Canada when the non-permanence of forestry carbon offsets is taken into consideration. We test six scenarios including three long-term projects with red pine, Norway spruce and hybrid poplar plantations and three shorter term hybrid poplar scenarios that produce temporary carbon emission offsets. We convert the break-even costs of sequestering carbon to a permanent carbon offset equivalent and analyze the possible geographical implications of the choices across eastern, southern and central Ontario, Canada.The most financially viable scenarios show a relatively large part of central Ontario with attractive choices at a 4% discount rate but a much smaller area at an 8% rate. The assumption about the future price evolution of temporary carbon offsets is one of the biggest factors that influence the attractiveness of these choices. At the 4% discount rate and the assumption of rising prices of permanent carbon offsets, the scenarios that store carbon for long periods appear to be the least-costly option. Hybrid poplar appears as the best choice in southern Ontario and a mix of conifer species and hybrid poplar in the central and northern parts. When future prices of temporary carbon offsets are assumed to decline, temporary hybrid poplar projects appear to be more attractive in the southern and eastern parts of the province. The variety of alternative scenario choices also depends on the discount rate and future price expectations for temporary carbon offsets. For a relatively narrow deviation of the carbon offset price (±$0.6 t^-1 CO₂), only 4% to 9.2% of the total 5.8 million ha area would have one or more potentially viable alternative scenarios at the 4% discount rate and almost zero alternatives at the 8% rate. Higher discount rates lead to fewer attractive choices, suggesting that landowners would be left with very few options when trying to maximize net returns from plantations.