血清2型猪链球菌河南分离株毒力基因的鉴定及其cps2j全基因序列分析

为了解血清2型猪链球菌(S.suis2)河南分离株的毒力基因型及cps2j全基因突变情况,本研究扩增S.suis2毒力基因gdh、cps2j、mrp、ef 、sly、orf2和fbps,并对s.suis2的cps2j进行全基因序列测定和同源性分析.结果表明,gdh、cps2j、mrp、ef、sly、orf2和fbps基因在8个S.suis2分离株中的检出率分别为100％(8/8)、100％(8/8)、62.5％(5/8)、75％(6/8)、87.5％(7/8)、100％(8/8)和100％(8/8);其中cps2j全基因核苷酸及推导的氨基酸序列与来源不同的S.suis2分离株同源性分别达98％和97％以上,以该基因构建的系统发育树表明8株S.suis2河南分离株与国内外不同参考株同源性高,亲缘关系密切.     

鸡传染性喉气管炎病毒姻台株gB基因的序列测定及其结构功能分析

研究以鸡传染性喉气管炎病毒（ILTV）烟台株为模板，PCIK扩增出1条约2．7的gB基因片段，并将其克隆到pMD18-T载体中。序列测定显示，gB基因长2622bp，包含完的阅读框架。序列比较分析发现，烟台株和王岗株、河北株的班基因核苷酸序列与SA2株的比均在第89位上缺失1个碱基G，而在第102位核苷酸处插入1个碱基A，从而引起氨基酸序中第29-32位5个氨基酸的移码突变。烟台株还有另外7个碱基发生突变，使得其班基因与北株、王岗株、SA2疫苗株的gB基因核苷酸同源性分别为99．8％、99．7％和99．6％，氨基酸的同性分别为99．4％、99．4％、98．9％，表明不同ILTV毒株之间gB基因是非常保守的。划型相列河源     

Ⅰ型鸭肝炎病毒SH株全基因组序列测定与分析

本研究从上海市某鸭场发病鸭群中分离到1株DHV-1型强毒株,对其进行毒价测定、琼脂扩散试验和动物回归实验,结果显示：按103.41 ELD50/0.2 mL接种1日龄雏鸭,该毒株对雏鸭有明显的致病性,死亡率为60%,肝脏病变率为100%。经全基因组测序显示：该毒株长度为7652 nt,含626 nt的5＇非编码区和314 nt的3＇非编码区,编码一个2249 aa大小的多聚蛋白。根据Blast比对发现,该毒株属于经典的DHV-1A群,与韩国经典强毒株R85952（99.7%）和中国分离强毒株HP-1（99.3%）的同源性最高。     

宁夏白芨滩国家级自然保护区苦豆子内生真菌多样性及生态分布

为探索宁夏干旱荒漠区苦豆子（Sophora alopecuroides L.）内生真菌的多样性及区系组成,为苦豆子内生真菌的合理开发和利用提供理论依据。从宁夏白芨滩国家级自然保护区不同植被和土壤类型的6个样区采集苦豆子样品30份,采用组织匀浆法从植株的根、茎、叶和种子中分离内生真菌,根据培养性状、菌落、孢子等形态特征,结合rDNA-ITS序列分析对菌株进行鉴定;根据内生真菌的相对频率、物种多样性指数、丰富度指数和相似性系数分析其区系组成特点。结果表明,从30份样品中共分离得到内生真菌213株,分别属于19个属,其中镰刀菌属（Fusarium）、链格孢属（Alternaria）和茎点霉属（Phoma）为优势属。苦豆子内生真菌的分布具有一定的组织特异性,根部的内生真菌数量高于其他部位,茎部内生真菌多样性指数最高。植被类型中,沙生植被草原（样区Ⅴ）分离的内生真菌物种多样性指数最高,而荒漠草原（样区Ⅲ）最低。荒漠草原（样区Ⅰ）和沙生植被草原（样区Ⅴ）内生真菌群落有密切的相似性。可见,苦豆子蕴含丰富的内生真菌资源,其内生真菌具有很高的宿主特异性,且分布受生境影响。     

表达猪瘟兔化疫苗株E0蛋白的PK-15细胞系构建

将克隆到pGEM T-easy载体中的E0基因双酶切回收后，连接到增强型绿色荧光蛋白（EGFP）中，利用Lipofectamine^TM2000将重组子转染PK-15、BHK-21、VERO 3种细胞，直接在荧光显微镜下用蓝光激发进行观察，在3种细胞中都可以观察到绿色荧光，而且在转染后的24、48、72 h 3个时间点上，观察到的荧光细胞数量逐渐增多，在72 h时荧光细胞的数量在3种细胞中都达到最多，总的来看，在PK 15中荧光细胞的数量最多。通过对细胞荧光的定位发现，重组质粒的荧光主要分布在胞浆内，而且细胞核周围的荧光较强，胞核与胞浆的界限明显，尤其是在PK-15细胞和VERO细胞中这种现象尤为明显。未携带E0目的DNA的pEGFP-N1 Vector转染3种细胞后，都可以观察到绿色荧光，但是整个细胞中是均匀出现荧光的。经酶切、PCR、单抗间接免疫荧光检测，PK-E0细胞中有大量的HCLV的E0表达，单纯的PK-15细胞中没有E0的表达。HCLV株在PK-E0细胞中从48h开始到72h的滴度比在PK-15细胞中的滴度要高。证明PK-E0细胞中E0蛋白的大量表达增加了HCLV在细胞中的复制。     

猪流行性腹泻病毒山西分离株S基因遗传变异分析

为分析山西地区猪流行性腹泻病毒（PEDV）的遗传变异情况,试验利用RT-PCR方法对2014-2015年山西省疑似猪流行性腹泻的阳性病料进行克隆和测序,获得4个S基因片段,并对其基因序列和推导的氨基酸序列与国内外毒株进行比对分析。序列分析结果显示,4株PEDV山西分离株的S基因与CV777 vaccine相比,在170~171 bp之间插入12个核苷酸,在401~402、454~455 bp之间均插入3个核苷酸,在461~468 bp之间缺失6个核苷酸。4株PEDV山西分离株S基因之间核苷酸和氨基酸同源性分别为99.2%~99.8%和98.6%~99.7%,与2011-2015年中国流行毒株、CV777 vaccine、attenuated DR13、CV777的核苷酸同源性分别95.0%~98.5%、93.2%~93.6%、93.2%~93.7%、93.7%~94.4%,氨基酸同源性分别为96.2%~98.9%、91.9%~92.6%、92.1%~92.9%、92.9%~94.0%。遗传进化树分析结果表明,PEDV S基因分为3个群,4株PEDV山西分离株属于第一群,与2010年以后国内流行毒株（除AH-M、SQ2014）的亲缘关系较近,与2010年以前中国流行毒株、2个日本株、7个韩国株、2个疫苗株的亲缘关系较远。研究结果提示山西省流行的PEDV发生较明显的变异,需研发新的疫苗来控制PEDV的暴发。     

2个旋毛虫新生幼虫期特异性相似cDNA的克隆及序列分析

利用旋毛虫新生幼虫期特异性 c DNA探针 ,从新生幼虫 c DNA文库中筛选出 2个相似的旋毛虫新生幼虫期特异性 c DNA克隆 ,分别命名为 N5和 N10 ,N5长度为 12 5 0 bp,N10长度为 12 33bp。 NCBI Blast检索表明 ,2个c DNA全长序列均为旋毛虫新基因序列。DNASIS分析表明 ,N5与 N10的开放阅读框架分别为 10 14、10 17bp,编码338、339个氨基酸 ,推导的成熟蛋白氨基酸序列均为 32 1个氨基酸残基 ,相对分子质量推导值分别为 35 30 0和 354 0 0。 2个氨基酸序列中 N端均包含有一信号肽序列 ,可能为分泌性蛋白。NCBI Blast及 Inter Proscan检索表明 ,以上2个氨基酸序列均含有 型核酸酶的功能结构域 ,均编码 型核酸酶 (DNase ) ,且与已报道的旋毛虫包囊形成相关蛋白 P4 3(经鉴定也为 DNase )同源性最高。目前已有的试验结果证实 ,P4 3并未直接参与包囊的形成 ,而是一种与P4 3蛋白同源性非常高的蛋白参与了旋毛虫包囊的形成。由于 N5与 N10为旋毛虫新生幼虫期特异性表达基因 ,也就是在旋毛虫包囊形成的时期表达 ,而且与 P4 3具有较高的同源性 ,并均编码 DNase 蛋白 ,因此 N5、N10具有参与旋毛虫包囊形成的潜在可能     

Sequence and Phylogenetic Analysis of rDNA ITS of Three Eimeria Species in Rabbit

In order to study whether the internal transcribed spacers (ITS) sequence could be used as a molecular marker for the species identification of rabbit coccidian, the rDNA ITS of Eimeria intestinalis, Eimeria flavescens and Eimeria magna were amplified by polymerase chain reaction (PCR), and were cloned into pGEM-T Easy vector subsequently. The positive recombinant plasmids were identified by PCR and then sequenced. By sequence comparison and comparative analysis with the relative sequences of rabbit Eimeria spp. available in GenBank, the results showed that the lengths of Eimeria intestinalis, Eimeria flavescens and Eimeria magna were 1065, 1009 and 1047 bp, respectively, and the sequence homologies with the same species sequences were 99.2%, 99.0% and 94.5%, respectively, while were 55.3% to 82.1% compared with corresponding sequences of other different species sequences. The phylogenetic analysis using software Mega 5.0 showed that all rabbit coccidia clustered together in a clade, which was divided into two sister lineages, corresponding to the presence or absence of oocyst residuum. The result demonstrated ITS could be used as a molecular marker for the species identification of rabbit coccidia.     

杨树抗黑斑病相关基因表达谱分析

利用黑斑病的高抗无性系美洲黑杨I-69及黑斑病的高感无性系欧美杨I-45为材料建立的2个cDNA文库,随机挑取cDNA克隆进行5'端EST序列测序,共获得有效序列20 023条.序列经聚类分析和拼接后,共获得10 816个Unigene,其中包括3 734个Contig,7 082个独立的Singleton.被注释的8 853个具有同源性匹配序列基因中,按照GO的分子功能、生物过程和细胞组分3个不同分类角度进行分类.在具有功能注释的8 853个Unigene中,选出330个与完成全基因组测序的毛果杨序列进行BLAST分析,结果发现有177个抗病相关候选基因出现在282个Unigene中,其中135个分布于杨树的18个不同连锁群上,其他42个基因位于还没定位的scaffolds上.所测定的这些EST序列为后期在基因组水平上研究杨树黑斑病的水平抗性遗传机制及进一步的相关基因发现奠定基础.

Abstract：

In an attempt to elucidate the molecular mechanism for resistance of black spot disease in poplar,gene expression profiles in leaves of Populus deltoides'Lus'(I-69/55)and P.euramericana'I-45/51',which were inoculated with the pathogen Marssonina brunnea f.sp.brunnea,were analyzed based on expressed sequence tags (ESTs).A total of 20 023 valid ESTs from the 5'terminal ends derived from corresponding cDNA libraries of the two poplar species were sequenced.Cluster analysis of the 20 023 sequences yielded 10 816 tentative unigenes,including 3 734 contigs and 7 082 singletons.All tentative unigenes were classified by Gene Ontology functional categories.To find resistance-associated candidate genes and locate them on poplar genome,330 unigenes was chosen from 8 853 annotated tentative unigenes,and their BLAST alignment was conducted with Populus trichocarpa assembly,1 77 related candidate resistant genes were found,and they presented in 282 unigenes.Among these genes,there were 1 35 genes located on 18 different linkage groups of poplar genome,and 42 genes located on the different scaffolds.This study supplied a resource of candidate genes for further exploring the genetic mechanism for the host horizontal resistance to the pathogen Marssonina brunnea at the whole genome range,and provided important information for further gene discovery.     

Study on Length Polymorphism of KAP1 Family Genes in Yak (Bos gurnniens)

This study was aimed to understand the characteristics of length polymorphism with repeat sequence of keratin associated protein 1 (KAP1) family genes in yak. KAP1 family genes of yak and cattle were sequenced, and compared with sheep KAP1 family gene sequences. The results showed that cattle KAP1 family genes were located in chromosome 19, according to location of sheep KAP1 family genes in the chromosome and similarity with cattle KAP1 family genes, renaming the cattle KAP1 family (according to the gene location of chromosome) B2D, B2A, KAP1-1 and B2C genes into KAP1-4, KAP1-1, KAP1-2 and KAP1-3 gene, respectively. KAP1 family genes in the 3'and 5' flank were highly conserved, the difference between family genes mainly in the the repeat sequence region, which yak KAP1 to KAP4 genes were found 30 bp length polymorphism. There were B(CCQTS)A₁(CCQPT) repeat sequence and a new repeat sequence C(SIQTS). The results indicated that the repeat sequence was the key of the polymorphism of KAP1 family genes, which might be relate to combination with keratin protein.