Factorial regression analysis of genotype by environment interaction in ryegrass populations, using both isozyme and climatic data as covariates

A sample of 58 natural ryegrass populations (Lolium perenne L.) from the French and Spanish oceanic coast was evaluated for three seasonal growth traits (i.e. spring, autumn and winter vigour traits) in 5 evaluation sites (three in France and two in Spain). This sample showed a high level of genotype (population) × environment (evaluation sites) interactions for the three agronomic traits. A factor regression analysis, using both isozyme frequencies of populations and climatic factors of evaluation sites as covariates, was carried out on a sub-sample of 30 populations in order to explain these interactions. This method succeeded in explaining most population × location interactions by the product of two covariates. For instance, for spring vigour trait, 72.8% of the interaction term could be explained by the use of two covariates: the PGI2-20 allelic frequency of populations and the minimum temperature of the coldest month of evaluation sites. This study shows the advantage of such a method for plant breeders who need to identify promising ryegrass populations for their breeding objectives. A number of genetic and evolutionary hypotheses are also discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetics of grains per spike in durum wheat under normal and late planting conditions

Parental, F₁, F₂, BC₁, BC₂, BC₁₁, BC₁₂, BC₂₁, BC₂₂, BC₁ self and BC₂ selfed generations of three crosses involving six cultivars of durum wheat (Triticum durum Desf.) were studied for grains per spike under normal and late sown environments to analyze the nature of gene effects. A 10-parameter model did not fully account for the differences among the generation means. In two cases more complex interactions or linkage were involved in the inheritance of grains per spike in durum. Both digenic and trigenic epistatic interactions had a role in controlling the inheritance of grains per spike, however, trigenic interactions contributed more than digenic interactions. Non-fixable gene effects were many times higher than fixable ones in all three crosses and in both sowing environments indicating a major role of non-additive gene effects in the inheritance of this trait. Duplicate epistasis between sets of three genes under both environments was recorded for the cross Raj 911 × DWL 5002. Epistatic interactions, particularly the trigenic ones, contributed the maximum significant heterosis. Epistatic interactions involving dominance in the F₂ generations caused significant inbreeding depression. Selective diallel mating and/or biparental mating could be used for amelioration of grains per spike in durum wheat.     

Sclerotinia resistance in sunflower: I. Genotypic variations of hybrids in three environments of Argentina

Sclerotinia sclerotiorum infections on sunflower capitula produce white rot, one of the most dangerous diseases sunflower bears in all humid areas. Therefore, disease quantification on developed genetic materials is a very important action in sunflower breeding. Given the horizontal type of resistance these evaluations should be made in different environments. Several hybrids obtained after crossing seven female × seven male sunflower inbred lines in a factorial mating design were evaluated for resistance to white rot in two locations in the southeast of the province of Buenos Aires, Argentina. Disease incidence and the symptom appearance index indicated significant genotypic effects and genotype × environment (G × E) interactions. Genotypic effects were a greater source of variance than the G × E interaction effects. The G × E interactions only represented changes in magnitude. These results were used to identify the best genotypes for both resistance factors. Four hybrids showed low disease incidence values under both artificial and natural infections, of which only two had high values of the symptom appearance index at both locations. These hybrids are considered to have adequate resistance attributes for the ascosporic penetration and the mycelium extension in the capitulum tissue and could therefore be sown in the province of Buenos Aires without increasing risks of S. sclerotiorum attacks.     

大豆叶片性状和叶绿素含量QTL间的上位性和环境互作效应

以丰产性好、抗旱力强的栽培大豆晋豆23为母本,山西农家品种半野生大豆灰布支黑豆为父本杂交衍生的447个RIL作为供试群体。将亲本及447个家系分别于2011、2012和2013年采用随机试验种植,按照标准测量叶长、叶宽和叶柄长3个性状,并于2012年8月1日和8月8日和2013年8月2日和8月9日各测量1次叶绿素含量。采用QTLNETwork 2.0混合线性模型分析方法和主基因+多基因混合遗传分离分析法,对大豆叶片性状和叶绿素含量进行遗传分析和QTL间的上位性和环境互作效应研究。结果表明,叶长受2对加性-加性×加性上位性混合主基因控制,叶宽受3对等效主基因控制,叶柄长受4对加性-加性×加性上位性主基因控制,叶绿素含量受4对加性主基因控制;检测到10个与叶长、叶宽、叶柄长和叶绿素含量相关的QTL,分别位于A1、A2、C2、H_1、L和O染色体。其中2个叶长QTL分别位于C2和L染色体,是2对加性×加性上位互作效应及环境互作效应QTL;3个叶宽加性与环境互作QTL分别位于A2、C2和O染色体;2个叶柄长QTL分别位于L和O染色体;3个叶绿素含量QTL分别位于A1、C2和H_1染色体。叶片性状和叶绿素含量的遗传机制较复杂,加性效应、加性×加性上位互作效应及环境互作效应是大豆叶片性状和叶绿素含量的重要遗传基础。建议大豆分子标记辅助育种中,一方面要考虑起主要作用的QTL,另一方面要注重上位性QTL的影响,这对于性状的遗传和稳定表达具有积极的意义。     

Computer simulation of a selection strategy to accommodate genotype environment interactions in a wheat recurrent selection programme

Multi-environment trials (METs) are used in plant breeding programmes to evaluate genotypes (lines/families) as a basis for selection on expected performance (yield and/or quality) in a target population of environments (TPE). When a large component of the genotype environment (G × E) interactions results from crossover interactions, samples of environments in METs that deviate from the TPE provide a suboptimal basis for selection of genotypes on performance expected in the TPE. To adjust for the negative effects of these deviations, a selection strategy that weights the data from the MET according to their expected frequency of occurrence in the TPE (i.e. a weighted selection strategy) was investigated. Computer simulation methodology was used to obtain preliminary information on the weighted selection strategy and compare it to the traditional unweighted selection strategy for a range of MET scenarios and G × E interaction models. The evaluation of the weighted selection strategy was conducted in context with the germplasm enhancement programme (GEP) of the Northern Wheat Improvement Programme in Australia. The results indicated that when the environments sampled in the MET matched those expected in the TPE, the unweighted and weighted selection strategies achieved a similar response to selection in the TPE. However, when the environments sampled in the MET did not match the expectations in the TPE and a large component of the G × E interactions resulted from crossover interactions, the weighted selection strategy achieved a greater response to selection in the TPE. The advantage of the weighted strategy increased as the amount of crossover G × E interaction increased or fewer environments were sampled in the METs.     

Bottom-up down from the top: Honeydew as a carbon source for soil organisms

Honeydew produced by aphids is a well-studied food source for mutualistic ants. Although considerable amounts drop onto the soil surface there are hardly any studies dealing with the potential effects of this additional C source for soil organisms, particularly those living at the soil surface. We studied this question by simulating honeydew and investigating plots under Populus canescens formerly infested with aphids on two ruderal sites differing in soil organic matter content and vegetation cover. The simulated honeydew input increased microbial biomass with some delay in week 10. Both natural and simulated honeydew raised the activity densities of an epigeic Collembola taxon, the Bourletiellidae, but not of the dominant Hemisotoma thermophila. The honeydew effect varied over time and with the site, and was more pronounced at the nutrient-poor site for Collembola, but not for microbial biomass. Ant consumption reduced the amount of honeydew reaching the soil surface by 50%. The activity density of H. thermophila was negatively related to ants and spiders, hinting at a top-down control. Honeydew clearly acts as a bottom-up force for soil organisms, which is however only part of the complex network connecting the food webs of primary producers and decomposers.     

Drought and heat stress reduce yield and alter carbon rhizodeposition of different wheat genotypes

Drought and high temperature are major environmental stress factors threatening wheat production during grain filling stage resulting in substantial yield losses. Four wheat genotypes (Suntop, IAW2013, Scout and 249) were planted under two temperature levels (25 and 30°C) and two water levels (15% and 25% soil moisture content). Wheat yield, leaf δ¹³C, plant rhizodeposition, shoot biomass and root traits were examined. Low moisture (drought stress) and high temperature (heat stress) decreased the grain yield of all wheat genotypes, in particular 249, while combined drought and temperature stresses had the most pronounced negative effect on plant biomass and grain yield. Decreasing soil water availability decreased the allocation of plant‐derived C to soil organic carbon (SOC) and to microbial biomass through rhizodeposition. Leaf δ¹³C decreased with increased yield, suggesting that higher yielding genotypes were less water stressed and allocated less C to SOC and microbial biomass through rhizodeposition. Wheat genotypes with lower root/shoot ratios and thinner roots were more efficient at assimilating C to the grain, while genotypes with higher root/shoot ratios and thicker roots allocated more C belowground through rhizodeposition at the expense of producing higher yield. Therefore, improving these traits for enhanced C allocation to wheat grain under variable environmental conditions needs to be considered.     

Response to conventional and organic environment of thirty-six lentil (<Emphasis Type="Italic">Lens culinaris</Emphasis> Medik.) varieties

Thirty-six lentil varieties were evaluated under organic and conventional environment for three consecutive years in order to see whether the promising genetic material for an organic plant breeding program are different from those of a conventional system. The genetic material studied originated from various countries. In the conventional trial plots standard cultural practices (P mineral fertilization & pest control) were applied throughout the growing season, while in the organic ones no fertilizers or pest agrochemicals were applied. Significant regression, but of low value, between grain yield ranking and earliness or harvest index ranking was detected. Combined ANOVA indicated significant differences between genotypes, years, environments and genotype × environmental interactions (GEI). It was observed that under conventional management most of the genotypes had a higher yield compared to the organic one. The mean grain yield ranking of the genotypes in each of the environments revealed that some of the genotypes occupied the same ranking position at both the organic and the conventional environment (non-crossover GEI), while others exhibited a significant alteration in their ranking (crossover GEI) under the two environments. Crossover GEI and non-cross over GEI revealed two types of lentil varieties. Varieties with specific adaptation and varieties with broad adaptation. It was concluded that grain yield was in general higher when lentil varieties were grown under a conventional environment compared to the grain yield produced under an organic environment. Yet, there are lentil genotypes with a higher yielding ability under the organic management and therefore should be targeted by the breeder.     

Effects of three esca-associated fungi on Vitis vinifera L.: III. Enzymes produced by the pathogens and their role in fungus-to-plant or in fungus-to-fungus interactions

When the esca-associated fungi Phaeomoniella chlamydospora (Pch), Togninia minima (Tmi) and Fomitiporia mediterranea (Fme) were grown in liquid stationary cultures, it was seen that they were able to live in media containing resveratrol (RES) or tannic acid (TA) as the sole carbon source and that the fungi were able to convert both compounds. Particular attention is paid here to detecting RES and TA conversion. Pch, Tmi and Fme were partially inhibited by RES or TA. Pch, Tmi and Fme produced extracellular tannase, laccase and peroxidase enzymes in liquid or agarized cultures, whether glucose was present or not. When colonies of Pch, Tmi and Fme were confronted, they showed spatially and temporally heterogeneous patterns of laccase and peroxidase activity. The results indicate the non-synergistic, competitive association of Pch and Tmi and the inhibition of Fme growth. Muconic acid, a well-known intermediate in a large number of lignin and phenol oxidative processes, can partly or completely inhibit the lignolytic agent Fme, but is tolerated by Pch and Tmi. An explanation for wood pigmentation patterns by Pch, Tmi and Fme is given.     

Interactions Between Sulfur and Selenium Uptake by Corn in Solution Culture

Interactions between sulfur (S) and selenium (Se) uptake and accumulation in corn (Zea mays) plants were investigated in solution culture. Two concentrations (5 and 10 μ M) of Se (as selenate) and three concentrations of S (as sulfate) (0.5, 1.5, and 2.5 mM) were used. Results showed that shoot and root biomass were affected significantly by different S concentrations in solution, but not affected by Se application when S concentrations in solution were lower than 1.5 mM. Selenium concentrations as well as Se accumulation in shoots and roots on a dry weight basis increased dramatically with increasing Se concentrations in solution. At a constant Se level, increasing S in solution reduced Se concentrations. Selenium accumulation in plants was not affected by S application, except in nutrient solution with Se at a concentration of 10 μ M. Sulfur concentrations and S accumulation in shoots increased significantly with increasing Se concentrations in solution, while those in roots were unaffected by Se addition. Solution-to-shoot transfer factors and shoot-root distribution coefficients of Se and S were also discussed. These data suggest that it is necessary to manage carefully both S and Se levels in solution or in soils for supplementation of Se in plants. Results from this study indicate that human Se nutrition can be improved by supplementation of Se in crops.