Expression of PDGFR-β and Kit in canine anal sac apocrine gland adenocarcinoma using tissue immunohistochemistry

Canine anal sac apocrine gland adenocarcinoma (ASAGAC) is an uncommon but highly invasive and metastatic malignancy. Toceranib phosphate (Palladia) is a receptor tyrosine kinase (RTK) inhibitor that targets several members of the split kinase RTK family. These membrane receptors are important for cell cycling, apoptosis and angiogenesis, all of which can contribute to carcinogenesis. The objective of this study was to evaluate archived, paraffin-embedded canine ASAGAC and normal canine anal sacs for immunohistochemical detection of Kit and platelet-derived growth factor receptor beta (PDGFR-β). Two of 77 neoplasms (2.6%) expressed Kit. Fifteen of the neoplasms (19.5%) were positive for PDGFR-β expression. None of the normal canine anal sac epithelium expressed Kit or PDGFR-β. Because of these results, further investigation should be considered to determine the role of RTKs in the clinical course and treatment of canine ASAGAC.     

Comparison on the physico‐chemical and nutritional qualities of normal and abnormal colored fresh chicken liver

This study evaluated the differences of physico‐chemical and nutritional qualities between abnormal colored chicken livers (ANCCLs) and normal colored chicken livers (NCCLs) and the safety of the both livers. Compared with NCCLs, ANCCLs were lower in protein, water contents (P < 0.01), pH and pigment contents (P < 0.05). NCCLs contained higher polyunsaturated fatty acid (PUFA) and saturated fatty acids (SFA) (P < 0.05). The PUFA/SFA ratio of NCCLs was 0.453, higher (P < 0.05) than that of ANCCLs. The contents of alanine, valine, tyrosine, lysine and histidine in NCCLs were higher (P < 0.05) than in ANCCLs. The contents of K, Na, P, Cu, Fe and Se of NCCLs were higher (P < 0.05), but the Ca content was lower (P < 0.05). The content of the heavy metals (As, Hg, Pb and Cd) of the two types of livers complied with food safety requirements. Although NCCLs had higher nutritional value than ANCCLs, both livers were acceptable for human consumption.     

Pedotransfer functions to assess adsorbed phosphate using iron oxide content and magnetic susceptibility in an Oxisol

Adsorbed phosphate in soils can be chemically extracted; however, this process is both time‐consuming and not cost‐effective if large numbers of samples have to be analysed. Indirect assessment of adsorbed phosphate by pedotransfer functions (PTFs) can help optimize fertilizer strategies. This study aimed to evaluate the spatial variability of adsorbed phosphate (P_ads), iron oxides and magnetic susceptibility (MS) in oxisols and to calibrate PTFs to predict P_ads. A total of 308 soil samples were collected from Hapludox and Eutrudox soils formed from sandstone in Brazil. The contents of clay (196–607 g/kg), iron oxides (40–165 g/kg), MS (1.2–29 × 10^?6 m³/kg) and P_ads (327–842 mg/kg) were in the range of typical values for these highly weathered soils. This study showed that the attributes studied were spatially dependent. Geomorphic surfaces enabled understanding of spatial variability and helped to develop a more efficient sampling scheme to calibrate PTFs. Moreover, the adsorbed phosphate in these oxisols could be predicted by a PTF using iron oxides and MS as predictors. The MS attribute enabled the most accurate prediction (concordance coefficient = 0.95, root‐mean‐square error = 46 mg/kg and relative improvement in root‐mean‐square error = ?4.12) of spatial variability through PTF compared to other predictors.     

Migration strategies of brown trout (Salmo trutta) in a subarctic river system as revealed by stable isotope analysis

We estimated the proportions of anadromous and freshwater‐resident brown trout (Salmo trutta) in different parts of the subarctic River Näätämöjoki/Neidenelva system (Finland and Norway) using carbon, nitrogen and hydrogen stable isotope analyses of archived scales as identifiers of migration strategy. Our results showed that carbon stable isotope values were the best predictor of migration strategy. Most individuals fell into two clearly distinct groups representing anadromous (47%) or freshwater‐resident (42%) individuals, but some fish had intermediate carbon values suggesting repeated movement between freshwater and the sea. The proportion of anadromous individuals decreased steadily with distance from the sea forming a spatial continuum in migration strategies which is probably maintained by the combination of several factors such as divergent availability of food resources, variable migration costs and genetic differences. These within‐catchment differences in migration strategies should be taken into account in fisheries management practices.     

Short‐term releases of CO2 from newly mixed biochar and calcareous soil

The work aimed to quantify native organic C mobilized in one calcareous soil in the 21 days after addition of biochar at a range of large to very large applications. The experiment was carried out in unplanted microcosms, and CO₂ flux was used as a measure of net mineralization. A rapid methodological approach, which does not require ¹³C as a tracer, was used to assess any priming effects induced by the biochar. The amount of CO₂‐C mobilized was small relative to the amount of biochar C and proportional to the amount of the biochar added. The additional CO₂‐C was similar to the content of the water‐soluble organic carbon in the biochar added with each application. No interaction with native soil C, that is priming effect, was observed.     

Soil organic carbon stock variability in the Northern Gangetic Plains of India: interaction between agro‐ecological characteristics and cropping systems

Soil organic carbon (SOC) content and its spatial distribution in the Northern Gangetic Plain (NGP) Zone of India were determined to establish the cause–effect relationship between agro‐ecological characteristics, prevailing crop management practices and SOC stock. Area Spread Index (ASI) approach was used to collect soil samples from the NGP areas supporting predominant cropping systems. Exponential ordinary kriging was found most suitable geo‐statistical model for developing SOC surface maps of the NGP. Predicted surface maps indicated that 43.7% area of NGP had 0.5–0.6% SOC, while the rest of the area was equally distributed with high (0.61–0.75%) and low (< 0.5%) SOC content levels. Averaged across cropping systems, maximum SOC content was recorded in Bhabar and Tarai Zone (BTZ), followed by Central Plain Zone (CPZ), Mid‐Western Plain Zone (MWPZ), Western Plain Zone (WPZ) and South‐Western Plain Zone (SWPZ) of the NGP. The SOC stock was above the optimum threshold (> 12.5 Mg/ha) in 97.8, 57.6 and 46.4% areas of BTZ, CPZ and MWPZ, respectively. Only 9.8 and 0.4% area of WPZ and SWPZ, respectively, had SOC stock above the threshold value. The variation in SOC stock was attributed largely to carbon addition through recycling of organic sources, cropping systems, tillage intensity, crop or residue cover and land‐use efficiency, nutrient‐use pattern, soil texture and prevailing ecosystem. Adoption of conservation agriculture, balanced use of nutrients, inclusion of legumes in cropping systems and agro‐forestry were suggested for enhancing SOC stock in the region.     

Soil property differences among high‐ and average‐yielding soya bean areas in Arkansas,USA

Soya bean [Glycine max (L.) Merr] yields >6719 kg/ha (100 bu/ac) have only recently and infrequently been achieved. Quantifying soil property differences between high‐ and average‐yielding areas can help to further identify non‐plant‐related properties contributing to soya bean yield potential. The objective of this study was to evaluate the effects of region and soil depth on soil property differences between high‐ and average‐yielding areas. In each of the seven regions of the ‘Grow for the Green’ yield contest in Arkansas, prior to or just after harvest in 2014 and 2015, soil samples were collected from the top 20 cm of one contest high‐yield (HY ) area that was in close proximity to an average‐yield (AY ) area. Across all regions and both years, soya bean yields differed (P  <  0.05) between yield areas, averaging 4701 and 5498 kg/ha in AY and HY areas, respectively. Averaged across soil depth and years, numerous soil properties differed (P  <  0.05) between HY and AY areas within at least one of seven regions. Total soil C content was at least 20.2% greater in the HY than in the AY area in three of seven regions. Extractable soil P content was, on average, 19.4 kg/ha greater in HY than in AY areas in three of the seven regions. Results from this study have the potential to help producers better understand soil properties that contribute to or hinder achieving ultra‐high (>6719 kg/ha) soya bean yields.     

Drought Tolerance and Water Use of Cereal Crops: A Focus on Sorghum as a Food Security Crop in Sub‐Saharan Africa

Sub‐Saharan Africa (SSA) faces twin challenges of water stress and food insecurity – challenges that are already pressing and are projected to grow. Sub‐Saharan Africa comprises 43 % arid and semi‐arid area, which is projected to increase due to climate change. Small‐scale, rainfed agriculture is the main livelihood source in arid and semi‐arid areas of SSA. Because rainfed agriculture constitutes more than 95 % of agricultural land use, water scarcity is a major limitation to production. Crop production, specifically staple cereal crop production, will have to adapt to water scarcity and improved water productivity (output per water input) to meet food requirements. We propose inclusion and promotion of drought‐tolerant cereal crops in arid and semi‐arid agro‐ecological zones of SSA where water scarcity is a major limitation to cereal production. Sorghum uniquely fits production in such regions, due to high and stable water‐use efficiency, drought and heat tolerance, high germplasm variability, comparative nutritional value and existing food value chain in SSA. However, sorghum is socio‐economically and geographically underutilized in parts of SSA. Sorghum inclusion and/or promotion in arid and semi‐arid areas of SSA, especially among subsistence farmers, will improve water productivity and food security.     

Movement rules for juvenile steelhead: dynamic linking of movement behaviour to habitat and density

We incorporated explanatory factors including stream habitat type and fish density into individual‐based models with dynamic connections among adjacent habitat units to infer dispersal behaviour of juvenile steelhead Oncorhynchus mykiss in a Great Lakes watershed. We used mark–recapture data and an inverse modelling approach to estimate daily probability of steelhead moving out of a habitat unit, P(move), according to four competing models. The models used included (i) a null model where all fish had equal movement probability; (ii) a habitat‐dependent model where P(move) depended on the habitat type; (iii) a density‐dependent model of P(move); and (iv) a model where P(move) depended on both density and habitat type. The habitat‐dependent model provided the most parsimonious fit to the observed data according to Akaike's information criteria (AICc). In the null model, P(move) averaged 0.70, whereas P(move) averaged 0.75 in pools, 0.68 in riffles and 0.73 in runs in the habitat‐dependent model.     

Time‐lapse monitoring of soil water content using electromagnetic conductivity imaging

The volumetric soil water content (θ) is fundamental to agriculture because its spatiotemporal variation in soil affects the growth of plants. Unfortunately, the universally accepted thermogravimetric method for estimating volumetric soil water content is very labour intensive and time‐consuming for use in field‐scale monitoring. Electromagnetic (EM) induction instruments have proven to be useful in mapping the spatiotemporal variation of θ. However, depth‐specific variation in θ, which is important for irrigation management, has been little explored. The objective of this study was to develop a relationship between θ and estimates of true electrical conductivity (σ) and to use this relationship to develop time‐lapse images of soil θ beneath a centre‐pivot irrigated alfalfa (Medicago sativa L.) crop in San Jacinto, California, USA. We first measured the bulk apparent electrical conductivity (EC_a – mS/m) using a DUALEM‐421 over a period of 12 days after an irrigation event (i.e. days 1, 2, 3, 4, 6, 8 and 12). We used EM4Soil to generate EM conductivity images (EMCIs). We used a physical model to estimate θ from σ, accounting for soil tortuosity and pore water salinity, with a cross‐validation RMSE of 0.04 cm³/cm³. Testing the scenario where no soil information is available, we used a three‐parameter exponential model to relate θ to σ and then to map θ along the transect on different days. The results allowed us to monitor the spatiotemporal variations of θ across the surveyed area, over the 12‐day period. In this regard, we were able to map the soil close to field capacity (0.27 cm³/cm³) and approaching permanent wilting point (0.03 cm³/cm³). The time‐lapse θ monitoring approach, developed using EMCI, has implications for soil and water use and management and will potentially allow farmers and consultants to identify inefficiencies in water application rates and use. It can also be used as a research tool to potentially assist precision irrigation practices and to test the efficacy of different methods of irrigation in terms of water delivery and efficiency in water use in near real time.