贵州野生枇杷资源遗传多样性的ISSR分析

本文采用ISSR标记,构建了贵州39份野生枇杷种质的DNA指纹图谱,并对其遗传多样性进行了评价。结果表明,以筛选出的15条引物进行PCR扩增,获得清晰、重复性好的谱带125条,其中多态性谱带108条,多态性比例为86.4%;应用引物815、825和841的组合,构建了39份枇杷种质的ISSR指纹图谱,可以有效区分所有供试材料;15条引物的谱带数据聚类分析表明,供试种质的遗传相似性系数为0.40~0.98,在相似性系数为0.70时,可将供试种质分成五大类。聚类结果与种质表型相关,与地理分布的相关性不明显。     

Identification and molecular characterization of border disease virus (BDV) from sheep in India

Pestiviruses isolated from sheep and goats in India thus far have been bovine viral diarrhoea virus 1 (BVDV-1) or BVDV-2. During routine genetic typing of pestiviruses in the years 2009-10, border disease virus (BDV) was detected in eight Indian sheep of a flock showing clinical signs of BD by real time RT-PCR. All the samples yielded positive virus isolates in cell culture but were found negative by a BVDV antigen ELISA. A representative BDV isolate was characterized at genetic and antigenic level. Phylogenetic analysis carried out in 5′-UTR, N^pro and E2 regions of genome typed the Indian BDV isolate as BDV-3. A more detailed analysis in N^pro and entire region coding structural proteins showed that the N^pro (168), C (100 aa), E^rns (227 aa), E1 (195 aa) and E2 (373 aa) proteins were of size characteristic for BDV reference strain X818. Antigenic differences were evident between the BDV-3 isolate and previously reported BDV-1, BDV-5 and BDV-7 strains. Although origin of BDV-3 in India is not clear, the results reflect probable introduction through trade in sheep between India and other countries or BDV-3 may be more widely distributed. Additionally, this study suggests that for diagnosis of BDV infection, the commercial BVDV Ag-ELISA should be used with caution. This is the first identification of BDV in sheep in India which highlights the need for continued pestivirus surveillance and assessing its impact on sheep and goat production.     

28份籽粒苋种质资源的主要农艺性状遗传多样性分析

为了解在哈尔滨地区引种的28份籽粒苋（Amaranthus hypochondriacus）种质资源的遗传多样性,本试验对28份籽粒苋的22个农艺性状指标进行了多样性指数分析、相关性分析、聚类分析和主成分分析。结果表明：该批籽粒苋种质资源具有较为丰富的遗传多样性,13个质量性状的Shannon多样性指数分别为花序颜色（1.569） > 茎颜色（1.525） > 茎条纹颜色（1.294） > 花序一级侧枝姿态（1.061） > 叶脉明显程度（1.000） > 叶正面颜色（0.956） > 叶背面颜色（0.906） > 团伞状花簇的密度（0.856） > 叶片先端形状（0.822） > 种子颜色（0.658） > 花序姿态（0.656） > 叶柄花青甙显色（0.628） > 花序花簇类型（0.257）;9个数量性状遗传多样性指数和变异系数均以单株干重最大,分别为1.612和34.59%。相关分析结果表明,单株干重与株高、叶长、叶宽、茎粗、叶柄长、主序花序长和单株有效分枝数均呈极显著正相关（P<0.01）。通过聚类分析将28份资源分为4类,第Ⅰ类群各性状中等;第Ⅱ类群综合性状均较好,属于高秆、高产籽粒苋优异材料;第Ⅲ类群茎秆最粗、主花序最长、千粒重最大,可作为选育种子高产的优异材料;第Ⅳ类群为矮秆、观赏型籽粒苋特异材料。主成分分析结果显示,前3个主成分的累计贡献率为78.048%,其中第1主成分与籽粒苋的干草产量有关,第2主成分与种子产量有关,第3主成分与形态性状有关。本研究对28份籽粒苋的多个形态指标进行了深入分析,可为我国籽粒苋种质资源高效利用、亲本选择和品种改良提供理论基础。     

中国荷斯坦牛RPL23A和ACACB基因对产奶性状的遗传效应分析

作者所在团队前期通过奶牛乳腺上皮组织转录组测序及荷斯坦公牛全基因组重测序研究发现RPL23A和ACACB基因是奶牛乳蛋白和乳脂性状的候选功能基因,本研究旨在探究这两个基因是否对奶牛产奶性状具有显著遗传效应。以北京地区7个牧场的1059头中国荷斯坦母牛为试验群体,采集尾根静脉血并提取基因组DNA,通过飞行时间质谱方法检测SNP位点基因型,利用SAS9.4软件的MIXED过程进行关联分析。结果表明,RPL23A基因的SNP位点g.20146771C>T与第1泌乳期5个产奶性状达到显著或极显著关联(P=0.0001~0.0416),其优势等位基因为T;ACACB基因的g.63878254T>C位点与第1泌乳期产奶量、乳脂量和乳蛋白量呈极显著关联(P<0.01),其优势等位基因为C;g.63962768G>A位点与第1泌乳期产奶量、乳脂量、乳脂率和乳蛋白率关联显著或极显著(P=0.0001~0.0391),其优势等位基因为A。综上,RPL23A基因主要影响中国荷斯坦牛产奶量和乳蛋白,ACACB基因对产奶量和乳脂具有显著遗传效应,3个SNP位点可考虑作为遗传标记用于标记辅助选择培育奶牛高乳蛋白乳脂新品系和选育提高。     

东北马鹿茸重性状遗传力和重复力的估测

采用同父异母半同胞组内相关法,对乌兰坝林场７只东北马鹿种公鹿７１只后裔,１９９２～１９９７年９锯时四杈茸鲜重遗传力估测结果为０４０,属高遗传力;采用组内相关系数法,对该场７～１１锯１３只东北马鹿种公鹿锯四杈茸鲜重的重复力估测结果为０６９（Ｐ＜００１）,属高重复力,为东北马鹿的纯种选育提供了主要性状的遗传参数。     

山东地方鸡种遗传距离与聚类分析方法比较研究

选用5个多态性较好的微卫星标记，检测了山东省仅存的5个地方鸡种：寿光鸡、日照麻鸡、莱芜黑鸡、济宁百日鸡、鲁西斗鸡，以及一个外来鸡种——安卡黄鸡和一个外省地方鸡种——广西黄鸡共7个鸡种的遗传多样性。根据测试结果计算了每个等位基因的频率，并以基因频率为基础计算了Nei氏标准遗传距离(Ds)和DA遗传距离，发现日照麻鸡与济宁百日鸡的距离最近，而鲁西斗鸡与其他6个鸡种距离都较远。根据两种遗传距离分别进行了NJ法和UPGMA法聚类，得到4个聚类图。结果表明：DA遗传距离的UPGMA聚类图比较可靠。     

Genetic diversity and historic introgression in German Angler and Red Dual Purpose cattle and possibilities to reverse introgression

Recovering native uniqueness has major importance for breeds with historic introgression. The aim of the study was to estimate population genetic parameters for two local red cattle breeds from Northern Germany and to study possibilities to reverse introgression. Genealogical information consisted of 90,783 individuals for German Angler and 187,255 individuals for Red Dual-Purpose cattle breed, with additional information on sex, born, breed, status, and conventional breeding values. It is concluded that the native genetic contribution could be included as an additional trait in the total merit index in order to recover a part of the native genetic background. Native contributions should be estimated in the long term from marker data in order to account for Mendelian sampling. The maintenance of a sufficient genetic diversity of native alleles can be achieved by an advanced OCS with appropriate constraints.     

我国家蚕基因组的最新研究——对家蚕基因组精细图和40个蚕类基因组遗传变异图的解读

2008年12月,西南大学家蚕基因组研究团队宣布了世界上第1张家蚕基因组精细图谱的诞生。家蚕基因组精细图和2003年发布的家蚕基因组框架图相比,具有基因覆盖度高、基因组组装更加完整、基因鉴定更加准确等特点。2009年,该研究团队在家蚕基因组精细图的基础上,选取具有代表性的29个家蚕突变品系和11个不同地理来源的中国野桑蚕品系进行了全基因组重测序与序列比较分析,共获得了29个家蚕突变品系和11个中国野桑蚕地理品系的全基因组序列,绘制完成了世界上第1张基因组水平上的蚕类单碱基遗传变异图谱,同时还发现了驯化对家蚕生物学性状影响的基因组印记,从全基因组水平上揭示了家蚕的起源进化。2009年8月,《Science》杂志发表了西南大学的研究论文"40个蚕类基因组的重测序揭示了家蚕的驯化事件及驯化相关基因",标志着家蚕基因组计划进入一个新的历史阶段。     

天津地区荷斯坦公牛CVM、DUMPS和CN遗传缺陷检测

本文旨在研究天津地区中国荷斯坦公牛脊椎畸形综合征（Complex vertebral malformation,CVM）、尿苷酸合酶缺乏症（Deftciencv of uridine monophospham synchase,DUMPS）和瓜氨酸血症（Citrullinemia,CN）3种遗传缺陷的携带者比率及系谱来源。通过PIRA—PCR和PCR—RFLP方法分别对天津奶牛发展中心参加全国青年公牛联合后裔测定和国家良种补贴项目的110头荷斯坦公牛进行了CVM、DUMPS和CN三种遗传缺陷检测。共发现6头CVM隐性有害基因携带公牛,携带者比例为5．45％,隐性有害等位基因频率为2．72％。经过系谱分析,其中4头CVM携带者均为美国公牛Carlin—MIvanhoeBell的后代,另外2头因系谱不完整而无法查询。未检测到DuMPs和CN隐性有害基因携带者。基于此,我国有必要尽快建立荷斯坦牛隐性遗传缺陷监控体系并进行系谱标注,避免携带公牛进入后裔测定和良种补贴项目,以逐步降低我国奶牛群体中遗传缺陷隐性等位基因频率。     

Responses to Selection against Clinical Mastitis in the Norwegian Cattle Population

The genetic trend for clinical mastitis was estimated for Norwegian Cattle, a population in which mastitis resistance has been included in the breeding programme since 1978. More than 1.2 million first-lactation daughters, with clinical mastitis records registered from 1978 to 1995, bred by 2043 sires, were analysed with a linear sire model. For bulls born from 1974 to 1990 a flat genetic trend for clinical mastitis was found. However, bull sires born from 1983 onwards, selected on a breeding goal with increased weight on mastitis relative to milk production, showed consistently larger and favourable selection differentials for mastitis relative to bull sires born earlier, which had an average selection differential of approximately zero. This will influence genetic trend in the population through their sons, which were born from 1990 onwards.