基于侯选基因标记的四倍体马铃薯休眠QTL关联分析

休眠期是马铃薯(SolanumtuberosumL.)重要的块茎性状之一,寻找调控马铃薯块茎休眠的关键基因,揭示其分子机制以选育具有适宜休眠期长度的马铃薯品种,对于解决当前马铃薯产业中过长或过短休眠期带来的经济损失和食品安全隐患等问题十分关键。前期研究在二倍体马铃薯连锁群体中定位了6个加性休眠QTL,本研究拟在四倍体马铃薯育种材料中验证这些休眠QTL。基于休眠QTL连锁的候选基因标记,采用混合线性模型(MLM),模型中考虑群体结构和亲缘关系(Q+K),在四倍体马铃薯自然群体St-hzau中对马铃薯块茎休眠期进行了关联分析。5号染色体上休眠QTL DorB5.3连锁的候选基因标记S199₃00和GWD (根据葡聚糖水双激酶α-glucan water dikinase基因设计)与马铃薯块茎休眠期具有显著的关联(P<0.05),分别解释了休眠期表型变异的7.8%和3.2%,分别能增加休眠期7.1 d和4.5 d,即在二倍体马铃薯连锁群体中定位的稳定主效休眠QTL DorB5.3在四倍体马铃薯关联群体St-hzau中也表现显著, DorB5.3的稳定性在关联分析结...     

Molecular mapping of powdery mildew resistance genes in wheat: A review

Powdery mildew, caused by Blumeria graminis f. sp. tritici (syn. Erysiphe graminis f. sp. tritici), is one of the most important diseases of common wheat (Triticum aestivum L.) worldwide. Molecular mapping and cloning of genes for resistance to powdery mildew in hexaploid wheat will facilitate the study of molecular mechanisms underlying resistance to powdery mildew diseases and help understand the structure and function of powdery mildew resistance genes, and permit marker-assisted selection in breeding programs. So far, 48 genes/alleles for resistance to powdery mildew at 32 loci have been identified and located on 16 different chromosomes, of which 21 resistance genes/alleles have been tagged by restriction fragment length polymorphisms (RFLPs), random-amplified polymorphic DNAs (RAPDs), amplified fragment length polymorphisms (AFLPs), sequence characterized amplified regions (SCARs), sequence-tagged sites (STS) or simple sequence repeats (SSRs). Several quantitative trait loci (QTLs) for adult plant resistance (APR) to powdery mildew have been associated with molecular markers. The detailed information on chromosomal location and molecular mapping of these genes has been reviewed. Isolation of powdery mildew resistance genes and development of valid molecular markers for pyramiding resistance genes in breeding programs is also discussed.     

Identification of AFLP fragments linked to one recessive genic male sterility (RGMS) in rapeseed (Brassica napus L.) and conversion to SCAR markers for marker-aided selection

117AB is a recessive genic male sterility (RGMS) line in which the sterility is controlled by a duplicate recessive gene named ms, located at two separate loci. In the RGMS line, the genotype of the sterile plant (117A) is msmsmsms, and that of the fertile plant (117B) is Msmsmsms. The present study was aimed to identify DNA markers linked to the ms locus by amplified fragment length polymorphism (AFLP). From the survey of 512 AFLP primer combinations, 6 AFLP fragments (y1, k1, k2, k3, k4, k5) were identified as being tightly linked to the Ms locus. The genetic distances between the markers and the Ms locus were all less than 8 cM, among which two fragments, designated as k2 and k3, co-segregated with the target gene in the tested population. Fragment k2 was successfully converted into a sequence characterized amplified region (SCAR) marker. The markers detected could be valuable in marker-assisted breeding of RGMS in Brassica napus.     

Single nucleotide polymorphism genotyping of the barley waxy gene by polymerase chain reaction with confronting two-pair primers

A high‐throughput single nucleotide polymorphism (SNP) genotyping procedure was developed to select amylose‐free barley mutants whose waxy genes had a C‐ to T‐base substitution in exon 5, which converted Gln‐89 of the wild‐type gene into a termination codon. An F₂ population carrying an amylose‐free waxy gene was checked for segregation. Polymerase chain reaction with confronting two‐pair primers (PCR‐CTPP) produced allele‐specific PCR products that have different sizes and are inherited in a co‐dominant manner. Two alleles of the barley waxy gene with SNP were correctly identified in parental strains using the PCR‐CTPP procedure. Segregation of the SNP as detected by PCR‐CTPP in an F₂ population fitted the expected 1:2:1 ratio. The PCR‐CTPP procedure can provide a time saving and cost‐effective alternative to derived cleaved amplified polymorphic sequence in marker‐assisted selection.     

Molecular mapping of a dominant genic male sterility gene Ms in rapeseed (Brassica napus)

Rs1046AB is a genic male sterile two‐type line in rapeseed that has great potential for hybrid seed production. The sterility of this line is conditioned by the interaction of two genes, i.e. the dominant genic male sterility gene (Ms) and the suppressor gene (Rf). The present study was undertaken to identify DNA markers for the Ms locus in a BC₁ population developed from a cross between a male‐sterile plant in Rs1046AB and the fertile canola‐type cultivar ‘Samourai’. Bulked segregant analysis was performed using the amplified fragment length polymorphism (AFLP) methodology. From the survey of 480 AFLP primer combinations, five AFLP markers (P10M13₃₅₀, P13M8₄₀₀, P6M6₄₁₀, E7M1₂₃₀ and E3M15₁₀₀) tightly linked to the target gene were identified. Two of them, E3M15₁₀₀ and P6M6₄₁₀, located the closest, at either side of Ms at a distance of 3.7 and 5.9 cM, respectively. The Ms locus was subsequently mapped on linkage group LG10 in the map developed in this laboratory, adding two additional markers weakly linked to it. This suite of markers will be valuable in designing a marker‐assisted genic male sterility three‐line breeding programme.     

利用基因拆分技术培育耐草甘膦转基因水稻的研究

耐除草剂转基因水稻基因飘流可能产生的环境安全问题是人们关注的焦点之一,并已成为耐除草剂转基因水稻能否在我国生产上发挥效益的限制因素。基因拆分技术能够有效地控制转基因目标性状飘流,为培育耐除草剂转基因水稻提供新的途径和思路。本研究将耐除草剂基因G2-aroA拆分成N端(EPSPSn,1～295aa)和C端(EPSPSc,296～435aa),分别与SspDnaE蛋白内含肽的N端(Intein-N)和C端(Intein-C)连接形成融合基因EPSPSn-In与Ic-EPSPSc,并分别通过农杆菌介导法转入受体材料中花11。Southern杂交证明转基因水稻En-12和Ec-22中外源基因为单拷贝插入。侧翼序列分析证明转基因水稻En-12和Ec-22中外源基因分别插入第2和第6染色体。利用四引物法筛选出转基因水稻En-12和Ec-22的纯合系,并通过有性杂交获得同时含有EPSPSn-In与Ic-EPSPSc的转基因水稻En×Ec。草甘膦抗性分析发现,单独含有1个基因片段的转基因水稻En-12和Ec-22不具有耐受草甘膦特性,而同时含有2个基因片段的转基因水稻En×Ec具有耐受草甘膦的特性,说明拆分后的2个蛋白片段在intein的介导下重新组装成完整有功能蛋白,并赋予转基因水稻耐受草甘膦的特性。转基因水稻En×Ec与含有完整G2-aroA转基因水稻G2-6相比,其耐受草甘膦的能力有所下降,但能够满足生产需求。本研究结果为利用基因拆分技术培育转基因耐草甘膦水稻提供了科学依据,同时也为利用基因工程手段培育转基因杂交稻提供了新的技术平台。     

水稻温敏型叶片白化转绿突变体tsa2的表型鉴定与基因定位

水稻温敏型叶色突变体是研究植物光合作用、叶绿体结构和功能以及温度影响叶绿体发育的理想材料。利用甲基磺酸乙酯(EMS)诱变籼型水稻(OryzasativaL.)三系保持系西农1B,从其后代中筛选到一个突变性状稳定遗传的温敏型叶片白化转绿突变体tsa2 (temperature-sensitive green-revertible albino 2)。与野生型相比, tsa2突变表型受温度影响, 22°C条件下萌发的野生型幼苗表型正常,而tsa2幼苗完全白化,且约40%白化苗死亡,存活白化苗的光合色素含量、光合速率均显著降低,成熟期主要农艺性状均显著变劣;在28°C下萌发的tsa2幼苗叶片呈浅绿色并伴有白条纹,其光合色素含量显著降低,光合速率及主要农艺性状差异较小; 32°C下萌发的tsa2幼苗叶片无明显差异。透射电镜观察显示,与野生型相比,tsa2在22°C下叶肉细胞中无叶绿体或存在异常发育叶绿体(尚未分化出基粒和基层),在28°C下部分叶肉细胞含少量发育完整的叶绿体,在32°C下叶肉细胞数量及形态均正常。实时荧光定量PCR(qRT-PCR)分析表明,与野生型相比,tsa2突变体中部分光合色素代谢途径基因、叶绿体发育相关基因及光合作用相关基因的表达水平呈不同程度变化。遗传分析表明, tsa2突变表型受一对隐性核基因控制, TSA2被定位于第5染色体SSR标记S5-57和S5-119之间,物理距离为718 kb。本研究为水稻遗传改良及研究温度影响叶绿体发育机制奠定了基础。     

蓖麻株高性状主基因+多基因遗传分析

本研究选用蓖麻YC2×YF1高、矮秆组合的2组6世代群体(P1、P2、F1、B1、B2和F2),对株高性状进行了主基因+多基因混合遗传模型分析。结果表明,蓖麻株高受1对主基因和多基因共同控制。2组群体在B1、B2和F2三个分离世代中主基因遗传率分别为37.05%/49.57%、30.51%/34.48%和43.98%/43.64%;主穗位高和主茎节数均受2对主基因和多基因共同控制,且主基因的互作效应显性效应加性效应。3个分离世代中,2组群体主穗位高主基因遗传率分别为67.91%/92.72%、86.89%/92.13%和60.18%/66.87%,主茎节数主基因遗传率分别为91.83%/91.50%、35.22%/63.37%和85.76%/94.58%。主茎节长由多基因控制,遗传率分别为47.64%/47.64%、38.87%/38.87%和25.25%/52.71%。以上遗传模式决定了蓖麻杂种后代株高、主穗位高和主茎节长的正向超亲遗传,而主茎节数则倾向于低值亲本。因此,主穗位高和主茎节数可以作为株高的早期间接选择指标。     

普通小麦主要农艺性状的全基因组关联分析

为解析小麦复杂农艺性状的遗传机制,本研究以150份小麦品种(系)为自然群体,在4个环境条件下测定了9个主要农艺性状,利用小麦35K SNP芯片,结合5种关联模型(Q、PCA、K、PCA+K、Q+K),进行全基因组关联分析。结果表明,全基因组多态性信息量PIC的范围为0.0950～0.5000,最小等位基因频率MAF值为0.0500～0.5000;群体结构分析和PCA分析均表明参试材料可分为两个亚群;连锁不平衡分析发现A基因组、B基因组、D基因组和全基因组的LD衰减距离分别为4.7、8、11和6 Mb。9个性状共检测到652个显著的关联位点(P≤0.001),其中21个SNP在2个或2个以上的环境中被重复检测到,分布在1A(1)、1B(4)、2A(3)、2D(2)、3A(1)、5A(1)、5B(5)、6A(1)、6B(2)和7D(3)染色体上; 1个SNP标记的物理位置未知, 3个SNP标记同时与2个性状显著关联;单个SNP的表型贡献率为7.67%～18.79%。8个优势等位变异在供试群体中所占比例较低,筛选出14个可能与小麦农艺性状相关的候选基因,其中TraesCS5B02G237200、TraesCS7D02G129700和TraesCS1B02G426300可能在植物抵御生物与非生物胁迫中起作用,TraesCS5B02G010800和TraesCS7D02G436800可能与植物激素的合成和响应有关,TraesCS2A02G092200可能与植物细胞壁的增强有关, TraesCS5A02G438800可能参与叶绿体发育,另外7个候选基因的功能未知。     

拟南芥APETALA1基因在花发育中的网络调控及其生物学功能

为了阐明拟南芥花分生组织特征基因--APETALA1（AP1）基因在开花调控网络的中心位置,笔者重点综述了AP1在花发育中的网络调控及其生物学功能,探讨了花发育机制的研究重点。AP1既是花分生组织决定基因,也是花器官发育特征基因,处于成花调控网络的关键位置。AP1基因需要通过与其他调控基因的相互作用,决定花分生组织的形成、花芽的起始及花器官的发育。