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Use of genomic recursions and algorithm for proven and young animals for single‐step genomic BLUP analyses – a simulation study 下载免费PDF全文
B.O. Fragomeni D.A.L. Lourenco S. Tsuruta Y. Masuda I. Aguilar I. Misztal 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2015,132(5):340-345
The purpose of this study was to examine accuracy of genomic selection via single‐step genomic BLUP (ssGBLUP) when the direct inverse of the genomic relationship matrix ( G ) is replaced by an approximation of G ?1 based on recursions for young genotyped animals conditioned on a subset of proven animals, termed algorithm for proven and young animals (APY). With the efficient implementation, this algorithm has a cubic cost with proven animals and linear with young animals. Ten duplicate data sets mimicking a dairy cattle population were simulated. In a first scenario, genomic information for 20k genotyped bulls, divided in 7k proven and 13k young bulls, was generated for each replicate. In a second scenario, 5k genotyped cows with phenotypes were included in the analysis as young animals. Accuracies (average for the 10 replicates) in regular EBV were 0.72 and 0.34 for proven and young animals, respectively. When genomic information was included, they increased to 0.75 and 0.50. No differences between genomic EBV (GEBV) obtained with the regular G ?1 and the approximated G ?1 via the recursive method were observed. In the second scenario, accuracies in GEBV (0.76, 0.51 and 0.59 for proven bulls, young males and young females, respectively) were also higher than those in EBV (0.72, 0.35 and 0.49). Again, no differences between GEBV with regular G ?1 and with recursions were observed. With the recursive algorithm, the number of iterations to achieve convergence was reduced from 227 to 206 in the first scenario and from 232 to 209 in the second scenario. Cows can be treated as young animals in APY without reducing the accuracy. The proposed algorithm can be implemented to reduce computing costs and to overcome current limitations on the number of genotyped animals in the ssGBLUP method. 相似文献
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多聚半乳糖醛酸酶抑制蛋白(PGIP)是植物重要的防卫蛋白之一,了解PGIP基因的核苷酸序列是对其进行分子遗传学与分子生物学研究的前提与基础。本研究采用同源克隆法,从16个紫花苜蓿(Medicago sativa)品种的集群DNA中克隆了7个苜蓿PGIP基因的部分基因组编码序列,分别对应于蒺藜苜蓿(M. truncatula)7个不同的PGIP基因,并命名为MsPGIP5、MsPGIP6、MsPGIP7、MsPGIP8、MsPGIP9、MsPGIP10和MsPGIP11。其中,MsPGIP5、MsPGIP6、MsPGIP8、MsPGIP9和MsPGIP11的单核苷酸多态性(Single Nucleotide Polymorphism,SNP)位点间的平均距离分别为20、74、34、423和21 bp,差异较大。对MsPGIP5、MsPGIP6、MsPGIP8和MsPGIP11进行荧光标记PCR单链构象多态性(FPCR-SSCP)分析,结果表明,其等位基因数目与PCR片段长度的比值分别为20、56、22和19 bp,变化趋势与这4个基因SNP位点间的平均距离基本一致。比较而言,在发现的7个苜蓿PGIP基因中,MsPGIP9序列高度保守,MsPGIP5和MsPGIP11的变异较大,而MsPGIP6与MsPGIP8的变异中等。 相似文献
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Fipronil modulation of GABAA receptor single-channel currents 总被引:3,自引:0,他引:3
Fipronil is the first phenylpyrazole insecticide introduced for pest control. Although fipronil is known to inhibit GABA receptors, the detailed mechanism of action remains to be seen. In order to elucidate the mechanism of fipronil interaction with the mammalian GABAA system, single-channel patch clamp experiments were performed using rat dorsal root ganglion neurons. The amplitude of main conductance state (27pS) current was not significantly altered by co-application of 10 microM fipronil and 10 microM GABA. The histograms of open time distribution were fitted to a sum of three exponential functions. After application of 10 microM fipronil, the proportion of the fastest component increased slightly and that of the slowest component decreased slightly. Thus, the mean open time was decreased from 11.4 ms to 7.8 ms by fipronil. The histograms of closed time distribution were fitted to a sum of four exponential functions. Fipronil 10 microM prolonged the slowest time constant resulting in a prolongation of the mean closed time from 29.7 ms to 52.8 ms. Thus, the frequency of channel openings was reduced. Thus, the fipronil suppression of GABA-induced whole-cell currents is caused in part by decreases in the channel open time and the frequency of channel openings. 相似文献
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研究番茄渣单贮或混贮替代部分全株玉米青贮对奶牛生产性能和经济效益的影响,为今后在奶牛科学养殖中开发和利用非常规饲料资源提供理论依据和技术支持。试验选择体重、泌乳期、胎次和产奶量相近且健康无疾病的30头泌乳前中期荷斯坦奶牛于内蒙古巴彦淖尔市临河区双河镇嘉益奶牛养殖合作社进行为期50 d的饲养试验。结果表明,番茄渣经过单贮或混贮(分别与梨渣、玉米秸秆、小麦秸秆混贮)后用于奶牛日粮中替代部分全株玉米青贮,可有效的降低玉米青贮的使用,降低生产成本,显著提高乳蛋白率(P<0.05)、乳脂率(P<0.05)和奶牛产奶量(P<0.05),提高养殖效益。番茄渣单贮或混贮可提高奶牛生产性能和经济效益,并可作为一种非常规饲料资源在奶牛业中进行推广应用。 相似文献
16.
Summary Polymerase chain reaction (PCR) amplification of specific alleles (PASA) was adapted as a molecular marker‐based method for the rapid detection of point mutations in Amaranthus retroflexus and Amaranthus rudis leading to ALS inhibitor resistance. Two pairs of primers were designed for the specific amplification of alleles of the ALS gene of susceptible and resistant biotypes. The allele‐specific primer matched the desired allele, but mismatched the different allele at its 3′ end. Differentiation was carried out by comparison of the amplified DNA fragments in gel electrophoresis after PASA‐PCR. In A. rudis, differentiation was possible with one PCR and genomic DNA as probe. A ‘nested’ PCR was necessary for the differentiation of sensitive and resistant A. retroflexus. PASA is useful for the identification of resistant weed biotypes and also as a monitoring tool to map resistance occurrence and distribution. Advantages include the fast and clear separation of those plants with and without mutations at an early stage of development, its easy and consistent performance and quick results compared with existing resistance detection tests. These advantages, when combined with management strategies, enable further activities to reduce herbicide resistance. 相似文献
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稻草降解及产油菌的筛选 总被引:1,自引:0,他引:1
本文筛选出了六株纤维素降解菌,其中菌株f8在稻草固态发酵培养基中产CMC酶活和FPA酶活最大分别为260.32 U和18.90 U,经初步鉴定为康宁木霉。菌株f3既能降解纤维素,又能产油脂,且在PDA液体培养基上油脂产率达到25%。经初步鉴定为绿色木霉。 相似文献
19.
Samples of inbred lines of Hordeum vulgare produced by pedigree inbreeding, doubled haploidy and single seed descent have been compared for a range of agronomic characters. Differences between the means of the in bred s produced by single seed descent and pedigree breeding were due to differing levels of inbreeding. The present study confirmed chat recombinant inbred families which out-perform the higher scoring parent may be produced by either method. Caution should, however, be exercised when simply inherited characters controlled by major genes are fixed in early generations. Differences between the doubled haploid and single seed descent samples for the character thousand grain weight were attributable to coupling linkages involving epistatic genes. The production and evaluation of random inbred lines should be considered as an alternative to pedigree methods of barley breeding. 相似文献
20.
为探究饲料中辅酶渣替代鱼粉对中华绒螯蟹生长性能、健康情况和肠道菌群的影响,以中华绒螯蟹幼蟹 (0.70±0.01g)为研究对象,分别以等蛋白的辅酶渣替代基础饲料中鱼粉的0% (对照组,含20%鱼粉)、20%、40%、60%、80%、100% (记为C、T20、T40、T60、T80、T100)的饲料投喂8周。结果显示,与C组相比,T40组生长性能无显著改变,T60组肌肉粗蛋白含量显著降低。T80组、T100组生长性能、体粗蛋白和粗脂肪含量显著降低;与C组相比,替代组血清谷丙转氨酶 (ALT)、谷草转氨酶 (AST)、碱性磷酸酶 (AKP)、甘油三酯 (TG)水平未见显著差异,总蛋白水平 (TP)在T100组显著降低。血清葡萄糖 (Glu)在替代组中显著降低。T60、T80、T100组的血清总胆固醇 (T-CHO)、高密度脂蛋白胆固醇 (HDL-C)含量显著降低,T80、T100组的血清低密度脂蛋白胆固醇 (LDL-C)含量显著降低;与C组相比,各替代组肝胰腺超氧化物歧化酶 (SOD)活性无显著差异,谷胱甘肽过氧化物酶 (GSH-Px)活性显著上升,T100组丙二醛 (MDA)含量显著降低;C、T40、T80组肠道菌群α多样性指数无显著差异,主坐标分析显示T80组蟹肠道菌群组成较C组发生改变。研究表明,辅酶渣替代饲料中40%的鱼粉对幼蟹的生长、抗氧化能力、肠道菌群无负面影响,但当替代比例超过80%时将导致幼蟹的生长性能下降、营养物质积累减少和肠道菌群稳态发生改变。
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