Segment-based coancestry,additive relationship and genetic variance within and between the Norwegian and the Swedish Fjord horse populations

ABSTRACT

The Fjord horse originates from Norway but forms a global population due to several small populations in foreign countries. There exists no information about the additive relationship and the genetic variance between these subpopulations. By collecting blood samples from Norwegian and Swedish Fjord horses, a sample of 311 Norwegian and 102 Swedish horses gave 485,918 SNPs available for analysis. Their inbreeding coefficients were calculated and compared to the pairwise coancestry and the shared genomic segments. The effective population size was almost similar with the two methods in the Norwegian Fjord horse population (63 and 71), but very different in the Swedish population (269 and 1136) and unprecise due to a much smaller number of observations. The study showed that coancestry from shared genomic segments can be used to estimate additive genetic relationship and genetic variation within and between the global populations of the Fjord horse.     

基于nSSR和cpDNA序列的城步峒茶群体遗传多样性和结构研究

采用简单重复序列标记(nSSR)与叶绿体DNA序列(cpDNA)分析技术,对城步峒茶群体进行了遗传多样性、遗传结构和遗传分化等研究。结果表明,15对nSSR引物在参试81份资源中共获得142个等位位点,平均每对引物9.47个,城步峒茶群体的观测杂合度(Ho)、期望杂合度(He)和Nei期望杂合度(Nei)分别为0.49、0.62和0.62,具有较高的遗传多样性。Structure分析将79份峒茶资源分成3个类群,但各类群的遗传背景较为复杂,没有明显的群体结构。F检验表明,城步峒茶群体的近交系数F_IS为正值(F_IS=0.177 5),群体间的遗传分化系数F_ST较小(F_ST=0.034 5),分化程度较低,基因流Nm较高(Nm=7.01)。3对cpDNA引物分别获得了473 bp(rbcL)、704 bp(matK)和320 bp(psbH-trnA)的片段序列,变异位点占总位点的比例分别为0.42%、0.71%和1.25%。将3个序列依次拼接,共产生了9个单倍型,单倍型数由多到少的居群依次为TXZ(6)、DZC(4)、DPS(4)、TYS(3)、HJZ(2),群体的单倍型多样性(Hd)和核苷酸多样性(π)分别为0.732和0.001 39。9个单倍型中,单倍型H1和H5处于进化网络图的中心节点上,并且包含资源数量最多,属于比较原始的单倍型。同时,nSSR和cpDNA的AMOVA分析结果基本一致,居群内的变异百分比分别达到96.69%和80.54%,城步峒茶的遗传变异主要存在于居群内。     

花椰菜主要性状遗传规律以及性状相关性分析

总结了花椰菜的单球质量、成熟期、株高株展、花球品质等主要性状的遗传规律以及性状之间的相关性,并得出结论:花椰菜主要性状遗传规律以及性状相关性研究对育种研究具有重要指导意义,但必须注重与田间调查相结合,只有将遗传规律与田间调查有机结合才能提高育种效率,提高育种水平。     

不同燕麦基因型源库关系对穗粒数形成过程的影响

为了解燕麦穗粒数形成过程与源、库特征之间的关系，连续两年以10个不同来源、熟期、穗型、株型、小穗数的燕麦品种为试验材料，测定三叶期至拔节期的幼穗分化阶段及抽穗期源库特征，采用方差分析、聚类分析、逐步回归分析等方法，分析不同燕麦基因型源库特征及对穗粒数形成过程的影响。结果表明，燕麦穗粒数形成过程存在基因型差异，幼穗分化较好品种的穗粒数较全部品种平均值高11.22%~65.43%；幼穗分化较好品种的光合势、干物质量、粒数叶比、收获指数显著高于幼穗分化较差品种，其中粒数叶比和收获指数是影响穗粒数形成的主要因素，粒数叶比和收获指数较全部品种平均值分别高0.99%~68.74%和0.85%~13.80%。综上所述，源库协调是燕麦幼穗分化良好的生理基础，可通过提高光合势和干物质量达到增源的目的，进而提高穗粒数。     

Chinese Rural Comprehensive Reform: Theoretical Innovation,Key Contradictions and Countermeasures

As a systematic project,Chinese rural comprehensive reform(hereinafter referred to as "the reform") involved multiple dimensions such as rural governance,economy,culture,society and ecology,which laid a solid foundation for the overall reform in China.Western rural development theory had been proved to be insufficient to support Chinese rural reform.Therefore,theoretical innovation became urgent in the fields of rural governance,government functions,public finance and rural-urban integration etc.In recent years,Chinese rural comprehensive reform had been adjusting itself to the requirements of the "new normal".And during the process of agricultural modernization,the bottlenecks included the contradictory relationships between reform,development and overall stability,agricultural simplification and industrial diversification,economic development and environmental protection,rapid development of urban areas and slow progress of rural areas,grassroots governance and democratic supervision etc.Proper countermeasures would help to settle the above contradictions.     

Evidence for genetic distinction among sympatric ecotypes of Arctic char (Salvelinus alpinus) in south‐western Alaskan lakes

Resource polymorphism may play an important role in the process of speciation. The Arctic char (Salvelinus alpinus) exhibits great phenotypic and genetic diversity across its range, making it an ideal species for studies of resource polymorphism and divergence. Here, we investigated genetic variation at 11 microsatellite loci among 287 Arctic char from five isolated yet proximate postglacial lakes in south‐western Alaska that were previously examined for resource polymorphism. Significant differences in pairwise F_ST were detected among all lakes (range from 0.05 to 0.28, all P < 0.02). In one lake (Lower Tazimina Lake), we found evidence for two genetic groups of char and for significant differences in the distribution of microsatellite variability among at least two of the three previously described body size morphotypes (‘large’‐, ‘medium’‐, and ‘small’‐bodied char; maximum F_ST = 0.09; differences in admixture proportions). We also found a significant association between genetic admixture proportions and gill raker counts among body size morphs (r = ?0.73, P < 0.001). Our data represent the first record of genetically distinct sympatric morphs of Arctic char in Alaska and provide further evidence that differences in morphology associated with feeding (gill rakers) and growth trajectories reflect niche diversification and promote genetic divergence in Holarctic populations of Arctic char.     

玉米茎秆抗倒伏遗传的研究进展

茎秆倒伏严重影响玉米产量、品质和机械化收获,是当前玉米生产和育种亟待解决的主要问题之一。加强对玉米茎秆抗倒伏性的研究,对提高品种抗倒伏能力具有重要意义。本文综述了玉米茎秆倒伏的主要影响因素及其遗传特征。茎秆倒伏与茎秆自身的强度密切相关。茎秆强度越高,抗倒伏性越强。茎秆强度受茎秆所处的发育阶段、茎秆内部结构和外部形态,及其细胞壁成分等影响。处于分生组织的茎秆细胞分裂旺盛,较易折断,而进入生殖生长后,茎秆表皮、厚壁组织增厚,维管束发育成熟,对茎秆的支撑作用增强。茎秆细胞壁的主要成分——纤维素、半纤维素、木质素、可溶性糖、无机物等均可提升茎秆强度。目前,研究者借助高通量表型平台,利用玉米连锁群体和自交系群体,采用各种定位方法,鉴定到一系列影响茎秆形态、强度、细胞壁成分的相关QTL和候选基因。研究表明,基于单倍型的QTL定位方法比基于单个SNP的定位效果好。一致性QTL分析将不同遗传群体的研究整合到一起,能够提高QTL结果的通用性。茎秆强度的遗传基础复杂,受微效多基因控制,位点间具有加性效应。茎秆成分QTL中的候选基因涉及细胞壁代谢、转录因子、蛋白激酶等。MAIZEWALL是玉米细胞壁相关基因的重要数据库。目前该数据库包含1 156个玉米细胞壁生物学相关的候选基因,为该领域的深入研究提供强大的资源。已鉴定到一系列影响玉米茎秆细胞壁成分、茎秆形态和强度的基因,其功能涉及纤维素合成路径,如纤维素合成酶类、Cobra类、糖基转移酶和核糖转运蛋白类;苯丙烷路径基因,如控制bm1—bm5的相关基因;植物激素类,如赤霉素、生长素、油菜素甾醇相关基因;转录因子如NAC、MYB;miRNA（ZmmiR528）以及F-box基因（stiff1）等。今后应积极探索不同发育时期玉米茎秆倒伏的力学机制;广泛发展自然群体或育种群体进行遗传分析;采取多种定位策略,提高抗倒伏相关基因鉴定的功效;针对优良等位基因,开发各类分子标记,加强抗倒伏分子标记辅助选择。本文将为玉米茎秆抗倒伏遗传机制解析及抗倒伏玉米品种的分子育种提供参考。     

棉花单核苷酸多态性标记研究进展

单核苷酸多态性标记已在农作物研究中得到广泛应用并取得重大进展。为了便利棉花SNP(Single nucleotide polymorphism)标记的研究和应用,介绍了利用基因芯片、简化基因组测序、重测序等在棉花中开发SNP标记的方法 ,综述了SNP标记在棉花遗传图谱构建、数量位点的定位和分子标记辅助育种、基因组测序以及系统进化等研究中的应用。并对异源四倍体棉花中SNP标记开发时,同源序列位点和部分同源序列位点上的SNP标记辨别问题进行了系统探讨,对其快捷的开发、检测方式和在数量基因定位中的应用前景进行了展望。     

吉林蛟河近熟林树种多样性格局组建机制研究

植物种在群落多样性格局组建过程中所起的作用一直是生态学重点关注的问题。2010 年在吉林蛟河建立面 积为21.12 hm2 的近熟林监测样地,样地中记录到DBH 1 cm 木本植物32 405 株, 共计50 种木本植物。利用单物 种-面积关系模型分析了样地内30 种木本植物对局域群落多样性格局的影响,利用完全空间随机化模拟计算植物 对局域多样性促进或抑制的显著性程度。研究结果表明:1)由于ISAR 模型没有考虑竞争的非对称性,在相同取样 面积下,同一树种的mISAR 值普遍低于ISAR 值。不同树种的mISAR 曲线更加分散、区分度更为明显,且具有明显 的尺度依赖性。2)在0 ~50 m 空间尺度上,簇毛槭、黑樱桃、翅卫矛、稠李、大果榆、花楷槭、毛榛和青楷槭为多样性 促进种;水榆为中性种;红松、色木槭、胡桃楸在绝大多数空间尺度上表现为抑制种;其余树种绝大多数在小尺度上 表现为促进种。3)在中小尺度上,促进种决定了局域群落多样性格局组建; 在较大尺度上,促进种和中性种共同作 用于群落多样性格局的组建,并且随机过程的影响相对更强。因此,促进种和抑制种所代表的确定性过程与中性 种所代表的随机过程共同作用于森林群落多样性格局构建过程, 并且二者起作用的空间尺度不同。