ABSTRACT: Bacterial populations in goldfish feces were characterized by the fluorescent in situ hybridization (FISH) method. A total of nine different group-specific rRNA-targeted oligonucleotide probes were used. Approximately half of the microbial cells (57.8 ± 16.7%) were detected with a probe EUB338 and found to be bacteria. The microbial cells in 33–35 of the 35 samples from five specimens strongly hybridized with probes ALF1b, BET42a and GAM42a, suggesting that goldfish intestinal bacteria are mainly composed of α, β and γ-subclasses of Proteobacteria. The fact that a probe AER66 reacted with 25.6 ± 14.2% of the total microbial cells in all 35 samples, demonstrated that genus Aeromonas was the dominant species in the goldfish intestines. Genus Bacteroides including Bacteroides type A detected with a probe BAC303 was observed in 15 of 35 samples while other taxonomic groups determined with HGC69a, CF39a and P72 were detected in 6–11 of 35 samples. These results strongly suggest that Bacteroides shows the greatest daily fluctuation and interindividual variation in the intestines of goldfish. Moreover, the FISH method was proven to be useful for rapid enumeration of taxonomic groups of fish intestinal bacteria. 相似文献
The objective of the study was to assess if long-chain alcohols (alcohols) and long-chain fatty acids (acids), along with long-chain alkanes, could be useful as markers in estimating the composition of mixtures containing herbages found in the Inner Mongolia typical steppe in China. Four herbage species, Stipa daicalensis , Stipa grandis , Artemisia frigid and Cleistogenes squarrosa , were collected during the growing season to characterize the alcohol and acid profiles of these herbages. Principal component analysis (PCA) was used to examine between-species differences in terms of their patterns of alcohols, acids and alkanes. Results confirmed earlier studies that alcohols and acids with even-numbered carbon chains were predominant and the total concentrations of alcohols or acids were generally higher than those obtained for alkanes. The results of PCA indicated that different marker types provided different discriminatory information. Alcohols and alkanes provided complementary discriminatory information, resulting in the clearest separation between the four species analysed. In choosing which markers to use, the results indicate that using more marker types does not always imply better estimates of the composition of mixtures . 相似文献